ID: uc010ite.1_intron_5_0_chr5_904336_f.5p
GENE: (6)
chr5:904286-904535+


(1)
AGO2.ip 		(1)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(3)
HELA 		(1)
OTHER 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCCCTGTGTAAAGCGTTAGCCCAGAAATTGACAATTAGACTTTCAAGCAGGTAACTTTCGGTAATCTGTGAGAGGAGAGCCATGGGAATGGGATTTATAACGGGAGGTTGTTTTTTTTTTTTTCTAAATCATTTTACGCAAATAATAGATTCCTCTCCACTGTAAGTCACTTGATTCCTCTGTATTCAGCATAGTTTTGAGTTATGATTTCAGTCTTTTAAGATTTGAGACTTACTTGATTGCCAGCACA
...........................................................................................((((((((..((((((..((((.((.(((....((((....))))...))).)).)))).)))).))..)))))))).........((.(((.....))).))........................................................
...........................................................................................92..........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................ATAACGGGAGGTTGTTTTTTTC....................................................................................................................................223.000.00-3.00---------------
..................................................................................................................TTTTTTTTTCTAAATCATTTTACG................................................................................................................2412.002.00--2.00--------------
..............................................................................................................TTTTTTTTTTTTTCTAAATCATTTTACG................................................................................................................2812.002.00--1.001.00-------------
...........................................................................................................TTGTTTTTTTTTTTTTCGGGG..........................................................................................................................212.000.001.001.00---------------
...................................................................................................ACGGGAGGTTGTTTTTTTTTTTTTC..............................................................................................................................2512.002.002.00----------------
...........................TTGACAATTAGACTTTCAAGCAGGTAC....................................................................................................................................................................................................272.000.00-----2.00-----------
...................................................................................................ACGGGAGGTTGTTTTTTTTTTTTCC..............................................................................................................................252.000.001.001.00---------------
...............................................................................................................TTTTTTTTTTTTCTAAATCATTTTACG................................................................................................................2712.002.00---1.00--1.00----------
................................................................................................................TTTTTTTTTTTCTAAATCATTTTACG................................................................................................................2612.002.00--1.00---1.00----------
......................AGAAATTGACAATTAGACTTTCAAGCAG........................................................................................................................................................................................................2812.002.00--------2.00--------
..........................................................................................................................................................................TTGATTCCTCTGTATTCAGCAGTT........................................................241.000.00-1.00---------------
................................................................................................ATAACGGGAGGTTGTTTTTTTTTTC.................................................................................................................................251.000.001.00----------------
...................................................................................................ACGGGAGGTTGTTTTTTTTTTTTC...............................................................................................................................241.000.00-1.00---------------
......................................................................................................GGAGGTTGTTTTTTTTTTATTT..............................................................................................................................221.000.00---------------1.00-
................................................................................................ATAACGGGAGGTTGTTTTTTTTTTTTCTCT............................................................................................................................301.000.001.00----------------
...................................................................................................ACGGGAGGTTGTTTTTTTTTTTCTC..............................................................................................................................251.000.00-1.00---------------
...................................................................................................ACGGGAGGTTGTTTTTTTTTTTTTTCC............................................................................................................................271.000.001.00----------------
....................................................................................................................TTTTTTTCTAAATCATTTTACG................................................................................................................2211.001.00---1.00-------------
............................................................................................................TGTTTTTTTTTTTTTCGTTG..........................................................................................................................201.000.001.00----------------
.................................................................................................TAACGGGAGGTTGTTTTTTTTTTTTCC..............................................................................................................................271.000.001.00----------------
................................AATTAGACTTTCAAGCAG........................................................................................................................................................................................................1811.001.00------------1.00----
...................................................................................................................TTTTTTTTCTAAATCATTTTACG................................................................................................................2311.001.00--1.00--------------
........................................................................................................AGGTTGTTTTTTTTTTTTTCAGG...........................................................................................................................231.000.001.00----------------
......................AGAAATTGACAATTAGACTTTCAAGCAGGTACCG..................................................................................................................................................................................................341.000.00-------1.00---------
..............................ACAATTAGACTTTCAAGCAGG.......................................................................................................................................................................................................2111.001.00----1.00------------
.................................................................................................................TTTTTTTTTTCTAAATCATTTCACG................................................................................................................251.000.00---1.00-------------
.................................................................................................TAACGGGAGGTTGTTTTTTTTTTTCTCT.............................................................................................................................281.000.00-1.00---------------
...........................................................................................................TTGTTTTTTTTTTTTTCTAAATTT.......................................................................................................................241.000.00----------------1.00
.....................CAGAAATTGACAATTAGACTTTCAAGCAG........................................................................................................................................................................................................2911.001.00--------------1.00--
................................................................................................ATAACGGGAGGTTGTTTTTTTTCTT.................................................................................................................................251.000.001.00----------------
......TGTAAAGCGTTAGCCCAGAAATTGAC..........................................................................................................................................................................................................................2611.001.00----1.00------------
.................................................................................................TAACGGGAGGTTGTTTTTTTTTCTCT...............................................................................................................................261.000.001.00----------------
........................................................................................................AGGTTGTTTTTTTTTTTTTCTATTTC........................................................................................................................261.000.001.00----------------
.....................................................................................................GGGAGGTTGTTTTTTTTTTCTCT..............................................................................................................................231.000.001.00----------------
...............................CAATTAGACTTTCAAGCAGGTACCG..................................................................................................................................................................................................251.000.00----1.00------------
...............................................................................................................TTTTTTTTTTTTCTAAATCATTTCACG................................................................................................................271.000.00------1.00----------
................................................................................................ATAACGGGAGGTTGTTTTTTTTTCC.................................................................................................................................251.000.001.00----------------
........................................................................................................AGGTTGTTTTTTTTTCTAC...............................................................................................................................191.000.00-1.00---------------
............................TGACAATTAGACTTTCAAGCAGGTAC....................................................................................................................................................................................................261.000.00-----1.00-----------
...................................................................................................ACGGGAGGTTGTTTTTTTTTCTTC...............................................................................................................................241.000.001.00----------------
.................................................................................................TAACGGGAGGTTGTTTTTTTTTTCTC...............................................................................................................................261.000.00-1.00---------------
...............................................................................................................TTTTTTTTTTTTCTAAATCACATG...................................................................................................................241.000.00---1.00-------------
.........................................................................................................GGTTGTTTTTTTTTTTTTCCTCC..........................................................................................................................231.000.001.00----------------
.......................................................................................................GAGGTTGTTTTTTTTTTTCGTT.............................................................................................................................221.000.001.00----------------
............................................................................................................TGTTTTTTTTTTTTTCTAAATCATTTTACG................................................................................................................3011.001.00--1.00--------------
........................................................................................................AGGTTGTTTTTTTTTTTTTCTCC...........................................................................................................................231.000.00-1.00---------------
........................................................................................................AGGTTGTTTTTTTTTTTTGTCC............................................................................................................................221.000.001.00----------------
................................................................................................ATAACGGGAGGTTGTTTTTTTTTTTCTCT.............................................................................................................................291.000.001.00----------------
........................................................................................................AGGTTGTTTTTTTTTTTGGT..............................................................................................................................201.000.00-1.00---------------
...................................................................................................ACGGGAGGTTGTTTTTTTTTCTCC...............................................................................................................................241.000.001.00----------------
.......................GAAATTGACAATTAGACTTTC..............................................................................................................................................................................................................2111.001.00-------------1.00---
............................................................................................................TGTTTTTTTTTTTTTCGGGC..........................................................................................................................201.000.00-1.00---------------
...........................................................................................................TTGTTTTTTTTTTTTTCGCGT..........................................................................................................................211.000.001.00----------------
........................................................................................................AGGTTGTTTTTTTTTCGGT...............................................................................................................................191.000.00-1.00---------------
........................................................................................................AGGTTGTTTTTTTTTTTGGG..............................................................................................................................201.000.001.00----------------
............................TGACAATTAGACTTTCAAGCAGGTACCG..................................................................................................................................................................................................281.000.00-------1.00---------

Antisense strand
TCCCTGTGTAAAGCGTTAGCCCAGAAATTGACAATTAGACTTTCAAGCAGGTAACTTTCGGTAATCTGTGAGAGGAGAGCCATGGGAATGGGATTTATAACGGGAGGTTGTTTTTTTTTTTTTCTAAATCATTTTACGCAAATAATAGATTCCTCTCCACTGTAAGTCACTTGATTCCTCTGTATTCAGCATAGTTTTGAGTTATGATTTCAGTCTTTTAAGATTTGAGACTTACTTGATTGCCAGCACA
...........................................................................................((((((((..((((((..((((.((.(((....((((....))))...))).)).)))).)))).))..)))))))).........((.(((.....))).))........................................................
...........................................................................................92..........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................................................................................................................CTGGCAATCAAGTAAGT.... 1711.001.00----------1.00------
....................................................................................................................................................ATTCCTCTCCACTGTAAGTTT................................................................................. 211.000.00-----------1.00-----
......................................................................................................................................................................................TATTCAGCATAGTTTGAGA................................................. 191.000.00---------1.00-------