ID: uc010ipl.1_intron_9_0_chr4_152065441_r.5p
GENE: SH3D19(11)
chr4:152068874-152069123-


(4)
BREAST 		(13)
CELL-LINE 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATGGTAAATTTAGCTTTTAAAAATGTTTGTGGTCAAGAGGTGTGCCCTAAAGTATATATACGATTCATCATTCCTTAGAAAAAGATGATGGAACAAATGTGGAATTGTCCCTTGACGCCAAGAGTGCTTTAGATGAGTAGGCCATAATAAATTCTAGGTCTTGGTTGGGCACAGTGGCTCACACCTATAATCCCAGCACTTCG
................................................................................................................................................(((((........((((....))))..(((((.....)))))..))))).........................................................
........................................................................................................................121.......................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................AAAAAGATGATGGAACAAATGT.......................................................................................................221564.00564.00250.00194.0084.0019.003.002.004.00-1.00-4.00-3.00------------------
...............................................................................................................................AAAGATGATGGAACAAATGT.......................................................................................................201181.00181.0047.0075.0037.005.00-3.003.00-1.00-2.006.002.00------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTC......................................................................................................23191.00564.0036.0032.009.0010.002.002.00-------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGT.......................................................................................................21171.0071.0020.0021.0021.008.00-1.00-------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATG........................................................................................................21145.0045.0010.0020.009.003.002.00-------------1.00------------
.................................................................................................................................AGATGATGGAACAAATGT.......................................................................................................18142.0042.0017.0017.003.00--1.001.00-3.00----------------------
................................................................................................................................AAGATGATGGAACAAATGT.......................................................................................................19132.0032.008.0013.0010.001.00---------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTC......................................................................................................22115.0071.009.004.00-2.00---------------------------
..............................................................................................................................AAAAGATGATGGAACAAATG........................................................................................................20112.0012.002.004.002.004.00---------------------------
...............................................................................................................................AAAGATGATGGAACAAATGTC......................................................................................................21111.00181.003.004.004.00----------------------------
...............................................................................................................................AAAGATGATGGAACAAATG........................................................................................................19110.0010.00-5.004.001.00---------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTCT.....................................................................................................24110.00564.008.00---2.00--------------------------
.............................................................................................................................AAAAAGATGATGGAACAA...........................................................................................................1828.008.006.501.00-0.50---------------------------
.................................................................................................................................AGATGATGGAACAAATGTCTTT...................................................................................................2217.0042.004.002.001.00----------------------------
...............................................................................................................................AAAGATGATGGAACAAATGTCT.....................................................................................................2216.00181.001.003.00-1.001.00--------------------------
.................................................................................................................................AGATGATGGAACAAATGTC......................................................................................................1915.0042.001.004.00-----------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTCTTT...................................................................................................2615.00564.002.00---3.00--------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTAA.....................................................................................................2415.00564.00-3.00-2.00---------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTATC....................................................................................................2415.0071.00-------5.00-----------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTCTT....................................................................................................2414.0071.001.00--1.002.00--------------------------
.............................................................................................................................AAAAAGATGATGGAACAAA..........................................................................................................1914.004.001.002.00------1.00----------------------
................................................................................................................................AAGATGATGGAACAAATGTC......................................................................................................2014.0032.001.003.00-----------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTCT.....................................................................................................2313.0071.003.00------------------------------
.................................................................................................................................AGATGATGGAACAAATG........................................................................................................1723.003.00-3.00-----------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTCTTT...................................................................................................2513.0071.001.00---2.00--------------------------
.............................................................................................................................AAAAAGATGATGGAACA............................................................................................................1742.502.50-2.25----0.25------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGA.......................................................................................................2212.0045.00-1.00-1.00---------------------------
................................................................................................................................AAGATGATGGAACAAATG........................................................................................................1822.002.001.001.00-----------------------------
...............................................................................................................................AAAGATGATGGAACAAATGTCTTT...................................................................................................2412.00181.00-2.00-----------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTA......................................................................................................2312.00564.002.00------------------------------
.............................................................................................................................AAAAAGATGATGGAACAAAT.........................................................................................................2012.002.001.00-1.00----------------------------
................................................................................................................................AAGATGATGGAACAAATGTCTTT...................................................................................................2312.0032.001.001.00-----------------------------
......................AGGACACCCTCTCTACAGT.................................................................................................................................................................................................................1912.002.00--------------2.00----------------
..................................................................................................................................GATGATGGAACAAATGTC......................................................................................................1812.001.00--1.00--1.00-------------------------
...............................................................................................................................AAAGATGATGGAACA............................................................................................................1502.002.00-2.00-----------------------------
.............................................................................................................................AAAAAGATGATGGAACAAAGGT.......................................................................................................2212.004.001.00-1.00----------------------------
...................................................................................................................................................................................................................TTGGGCACAGTGGCTCACACCGTG...............242.000.00---------2.00---------------------
.............................................................................................................................AAAAAGATGATGGAACAAACGT.......................................................................................................2211.004.00---1.00---------------------------
.............................................................................................................................................................................CTTTAGATGAGTAGGCCA...........................................................1811.001.00----------------------1.00--------
.....................................................................................................................................................................CAAGAGTGCTTTAGAAAAT..................................................................191.000.00--------------------1.00----------
................................................................................................................................AAGATGATGGAACAAATGTCT.....................................................................................................2111.0032.00-1.00-----------------------------
.................................................................................................................................AGATGATGGAACAAATGTCTT....................................................................................................2111.0042.00---1.00---------------------------
...............................................................................................................................AAAGATGATGGAACAAATTTCT.....................................................................................................221.000.00--1.00----------------------------
..........................................................................................................................................................................................................................CAGTGGCTCACACCTATAATCCCAGCCTTG..301.000.00----------------------------1.00--
..............................................................................................................................AAAAGATGATGGAACAAATGTT......................................................................................................2211.0071.001.00------------------------------
...............................................................................................................................AAAGATGATGGAACAAATGGCT.....................................................................................................2211.0010.00--1.00----------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGTCTTA...................................................................................................2511.0071.00----1.00--------------------------
.................................................................................................................................AGATGATGGAACAAATGTAA.....................................................................................................2011.0042.00-1.00-----------------------------
.................AAACCAGGACACCCTCTCT......................................................................................................................................................................................................................1911.001.00--------------1.00----------------
................................................................................................................................AAGATGATGGAACAAATGTCTT....................................................................................................2211.0032.001.00------------------------------
.............................................................................................................................................................................................................TCTTGGTTGGGCACAGTGACTC.......................221.000.00-------------1.00-----------------
...................................................................................................................................ATGATGGAACAAATGTCTT....................................................................................................191.000.00---1.00---------------------------
..............................................................................................................................................AATGTGGAATTGTCCCTTGACGCC....................................................................................2411.001.00---------------1.00---------------
.....................CAGGACACCCTCTCTACAGT.................................................................................................................................................................................................................2011.001.00-------------------------1.00-----
......................AGGACACCCTCTCTAC....................................................................................................................................................................................................................1611.001.00---------------------------1.00---
.......................GGACACCCTCTCTACAGTAAATACA..........................................................................................................................................................................................................2511.001.00-----------------------1.00-------
..................................................................................................................................GATGATGGAACAAATGTT......................................................................................................1811.001.00-1.00-----------------------------
...........................................................................................................................................................................................................................AGTGGCTCACACCTATAATCCCAGCATC...281.000.00-------------1.00-----------------
..................................................................................................................................GATGATGGAACAAATGT.......................................................................................................1711.001.00-----1.00-------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATTT.......................................................................................................2211.002.001.00------------------------------
..............................................................................................................................AAAAGATGATGGAACAAATGAA......................................................................................................2211.0012.001.00------------------------------
...............................................................................................................................AAAGATGATGGAACAAATGC.......................................................................................................2011.0010.00-1.00-----------------------------
.....................CAGGACACCCTCTCTACAGTAAATACATG........................................................................................................................................................................................................2911.001.00----------------1.00--------------
..............................................................................................................................AAAAGATGATGGAACAAA..........................................................................................................1831.001.00--0.330.67---------------------------
..................AACCAGGACACCCTCTCTA.....................................................................................................................................................................................................................1911.001.00---------------------1.00---------
..................................................................................................................................GATGATGGAACAAATGTCTTT...................................................................................................2111.001.00-----1.00-------------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGTCA.....................................................................................................2411.00564.001.00------------------------------
.................................................................................................................................AGATGATGGAACAAATGATC.....................................................................................................2021.003.00-------1.00-----------------------
............................................................................................................................GAAAAAGATGATGGAACAAATGT.......................................................................................................2311.001.00------------------------1.00------
..............................................................................................................................AAAAGATGATGGAACAAATGTTT.....................................................................................................2311.0071.00----1.00--------------------------
..................AACCAGGACACCCTCTCTACAGTAAA..............................................................................................................................................................................................................2611.001.00---------------1.00---------------
...............................................................................................................................AAAGATGATGGAACAAATGTAA.....................................................................................................2211.00181.001.00------------------------------
.........................ACACCCTCTCTACAGTAAATACATG........................................................................................................................................................................................................2511.001.00----------------1.00--------------
.............................................................................................................................AAAAAGATGATGGAACAACTGT.......................................................................................................2221.008.001.00------------------------------
..............................................................................................................................................................................................................CTTGGTTGGGCACAGTGGCTCTG.....................231.000.00-------------------1.00-----------
..............................................................................................................................AAAAGATGATGGAACAA...........................................................................................................1750.800.80-0.60----0.20------------------------
.............................................................................................................................AAAAAGATGATGGAACAAGTGT.......................................................................................................2220.508.00-0.50-----------------------------
...............................................................................................................................AAAGATGATGGAACAAA..........................................................................................................1740.500.50-0.50-----------------------------
................................CTCTACAGTAAATACATG........................................................................................................................................................................................................1820.500.50-----------------------------0.50-
........................................................................TTTGTGGTCAAGAGG...................................................................................................................................................................1540.250.25------------------------------0.25
...............................................................................................................................AAAGATGATGGAACAAACG........................................................................................................1940.250.50--0.25----------------------------
...............................................................................................................................AAAGATGATGGAACAAAAGT.......................................................................................................2040.250.50-0.25-----------------------------
...............................................................................................................................AAAGATGATGGAACAA...........................................................................................................1690.220.22-0.22-----------------------------
..............................................................................................................................AAAAGATGATGGAACAACTGT.......................................................................................................2150.200.80-0.20-----------------------------

Antisense strand
TGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATGGTAAATTTAGCTTTTAAAAATGTTTGTGGTCAAGAGGTGTGCCCTAAAGTATATATACGATTCATCATTCCTTAGAAAAAGATGATGGAACAAATGTGGAATTGTCCCTTGACGCCAAGAGTGCTTTAGATGAGTAGGCCATAATAAATTCTAGGTCTTGGTTGGGCACAGTGGCTCACACCTATAATCCCAGCACTTCG
................................................................................................................................................(((((........((((....))))..(((((.....)))))..))))).........................................................
........................................................................................................................121.......................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................................GGCACAGTGGCTCACACCTAGGCT............ 242.000.00---------2.00---------------------
.....................................................................................................................................................................................................................................ACCTATAATCCCAGCACTTT. 201.000.00--------------------------1.00----
.............................................................................................................................AAAAAGATGATGGAACAAATGG....................................................................................................... 2211.000.00----1.00--------------------------
.................................................................AAAAATGTTTGTGGTCCT....................................................................................................................................................................... 181.000.00-----------------1.00-------------
.............................................................................................................................CATTTGTTCCATCATCTTTTT........................................................................................................ 2111.001.00-----1.00-------------------------
....................................................................................................................................................................................................................TGGGCACAGTGGCTCACACCTATACCC........... 271.000.00---------1.00---------------------
..................................................................................................................................................................................................................GTTGGGCACAGTGGCTCAAGAC.................. 221.000.00-------------1.00-----------------
......................................................................................................................................................................................................................GGCACAGTGGCTCACACCTATGGCT........... 251.000.00---------1.00---------------------
.............................................................................................................................AAAAAGATGATGGAACAAATGGA...................................................................................................... 2311.000.00-1.00-----------------------------