ID: uc010ilv.2_intron_17_0_chr4_107169464_r.3p
GENE: TBCK(8)
chr4:107169414-107169663-


(1)
AGO2.ip 		(1)
BRAIN 		(12)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(4)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTTGGGATCCAGTTGGAAGCTATTTTAAAGCAATGCTTATTTCTCTTTAAGTATTTGCTTTTTCACAGTGACTAAATTTGTATAAAGTACAAATAAAAACTTTAAAAACATCAAAAACTTCTAGATTAGCAAACATTTGAATAAAGTATATTTCTAAAATTGATCATTTTAATTAATTATTTTCTCTCTTTATTTACCAGGAGCTTCCTGAAACTGTGATAGATCTTTTGAATAAGTGCCTTACCTTCCA
........................................................(((...((..((...))..((((((((...)))))))).............................))..))).......(((((((((...........(((((((.......))))))).........)))))))))......................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................TTCACAGTGACTAAATTCTG.........................................................................................................................................................................20123.001.0022.00----------------1.00-------------------
.............................................................TTCACAGTGACTAAATTCTGC........................................................................................................................................................................21114.001.007.001.00-1.00-----1.00-----1.00--1.00-----1.001.00-----------
.............................................................TTCACAGTGACTAAATTCCG.........................................................................................................................................................................20112.001.009.001.00-1.00----------------1.00----------------
.............................................................TTCACAGTGACTAAATTCCGC........................................................................................................................................................................2118.001.00-1.00-----2.00-----1.00-------1.00-1.00-----1.00-----1.00-
.............................................................TTCACAGTGACTAAATTCTT.........................................................................................................................................................................2018.001.008.00------------------------------------
.............................................................TTCACAGTGACTAAATTATG.........................................................................................................................................................................2015.001.005.00------------------------------------
.............................................................TTCACAGTGACTAAATTCT..........................................................................................................................................................................1913.001.001.00----------1.00----------1.00--------------
.............................................................TTCACAGTGACTAAATTCTGT........................................................................................................................................................................2113.001.002.00---1.00--------------------------------
.............................................................TTCACAGTGACTAAATTCTGG........................................................................................................................................................................2113.001.003.00------------------------------------
.............................................................TTCACAGTGACTAAATTATGT........................................................................................................................................................................2112.001.002.00------------------------------------
.............................................................TTCACAGTGACTAAATTCCGA........................................................................................................................................................................2112.001.00-1.00--------------------------------1.00--
.............................................................TTCACAGTGACTAAATTCCGG........................................................................................................................................................................2112.001.001.00--------------------------------1.00---
..................................................................................................................................................................................ATTTTCTCTCTTTATTTAAAAT..................................................222.000.00--2.00----------------------------------
.............................................................TTCACAGTGACTAAATTATGC........................................................................................................................................................................2112.001.002.00------------------------------------
.............................................................TTCACAGTGACTAAATTCTTC........................................................................................................................................................................2112.001.002.00------------------------------------
.............................................................TTCACAGTGACTAAATTTTT.........................................................................................................................................................................202.000.002.00------------------------------------
.............................................................TTCACAGTGACTAAATTATTC........................................................................................................................................................................2111.001.001.00------------------------------------
.............................................................TTCACAGTGACTAAATTCCTG........................................................................................................................................................................2111.001.001.00------------------------------------
.............................................................TTCACAGTGACTAAATCATG.........................................................................................................................................................................201.000.001.00------------------------------------
.......................................................................................................................................................................................................GGAGCTTCCTGAAACTGTGA...............................2011.001.00--------1.00----------------------------
.............................................................TTCACAGTGACTAAAAGA...........................................................................................................................................................................181.000.00--------------------------------1.00----
..........................................................................................................................................................................AATTAATTATTTTCTCTCTTTATTTACC....................................................2811.001.00---------------------------1.00---------
.................................................................................................................................................................................TATTTTCTCTCTTTATTATGT....................................................211.000.00--1.00----------------------------------
...............................................................................................................................................................................................................CTGAAACTGTGATAGATCTTTT.....................2211.001.00----------1.00--------------------------
.............................................................TTCACAGTGACTAAATTCAG.........................................................................................................................................................................2011.001.001.00------------------------------------
.............................................................TTCACAGTGACTAAATTCAGA........................................................................................................................................................................2111.001.00-------------------------------1.00-----
.............................................................TTCACAGTGACTAAATACCT.........................................................................................................................................................................201.000.00------1.00------------------------------
.............................................................TTCACAGTGACTAAATTCCC.........................................................................................................................................................................2011.001.00------------1.00------------------------
.............................................................TTCACAGTGACTAAACTCT..........................................................................................................................................................................191.000.001.00------------------------------------
.............................................................TTCACAGTGACTAAATTTTGG........................................................................................................................................................................211.000.001.00------------------------------------
....................................................................................................................................................................................................................ACTGTGATAGATCTTTTGAA..................2011.001.00----------------------------1.00--------
.............................................................TTCACAGTGACTAAATTACA.........................................................................................................................................................................2011.001.001.00------------------------------------
.............................................................TTCACAGTGACTAAATCCCG.........................................................................................................................................................................201.000.001.00------------------------------------
....................................................................................................................ACTTCTAGATTAGCAAAC....................................................................................................................1811.001.00-----1.00-------------------------------
.............................................................TTCACAGTGACTAAATTGCG.........................................................................................................................................................................2011.001.001.00------------------------------------
....................................................................................................................................................................................................................................TGAATAAGTGCCTTACCTT...1911.001.00--------------------------1.00----------
.............................................................TTCACAGTGACTAAATTCTTG........................................................................................................................................................................2111.001.001.00------------------------------------
...................................................................................................................................................................................................................AACTGTGATAGATCTTTTGAAT.................2211.001.00-----1.00-------------------------------
.............................................................TTCACAGTGACTAAATTCAA.........................................................................................................................................................................2011.001.00----------------1.00--------------------
.............................................................TTCACAGTGACTAAAGTCG..........................................................................................................................................................................191.000.00------1.00------------------------------
.............................................................TTCACAGTGACTAAATTCTGA........................................................................................................................................................................2111.001.001.00------------------------------------
.............................................................TTCACAGTGACTAAATCACG.........................................................................................................................................................................201.000.001.00------------------------------------
.............................................................TTCACAGTGACTAAATT............................................................................................................................................................................1711.001.00----1.00--------------------------------
.............................................................TTCACAGTGACTAAAGTCT..........................................................................................................................................................................191.000.00------------------------------1.00------
.............................................................TTCACAGTGACTAAATTTTG.........................................................................................................................................................................201.000.001.00------------------------------------
.............................................................TTCACAGTGACTAAATTTTGC........................................................................................................................................................................211.000.00--------------1.00----------------------
.............................................................TTCACAGTGACTAAATTACG.........................................................................................................................................................................2011.001.001.00------------------------------------
...........................................................................................................................................................................ATTAATTATTTTCTCTCTTTATTTACCAG..................................................2911.001.00------------------------------------1.00

Antisense strand
CTTGGGATCCAGTTGGAAGCTATTTTAAAGCAATGCTTATTTCTCTTTAAGTATTTGCTTTTTCACAGTGACTAAATTTGTATAAAGTACAAATAAAAACTTTAAAAACATCAAAAACTTCTAGATTAGCAAACATTTGAATAAAGTATATTTCTAAAATTGATCATTTTAATTAATTATTTTCTCTCTTTATTTACCAGGAGCTTCCTGAAACTGTGATAGATCTTTTGAATAAGTGCCTTACCTTCCA
........................................................(((...((..((...))..((((((((...)))))))).............................))..))).......(((((((((...........(((((((.......))))))).........)))))))))......................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................................................................TTTGAATAAGTGCCTTT....... 171.000.00-------------------1.00-----------------