ID: uc010ihb.2_intron_7_0_chr4_57237810_r.5p
GENE: (2)
chr4:57244114-57244363-


(2)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(3)
BREAST
(15)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(6)
SKIN
(1)
TESTES

Sense strand
ATTGTCAGAGTGCCTCATAAGTGTATAGTACCAAATATCCAGCATTTTCGGTAAGTTCTAGTCTTTGACTCTTTCTCAGAATCTATATTTTAGGCCAGGTGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAAAGCTGTCTCTACTGAAAAAATACAAAAATCAGCCAGGCGTGTTGGTGGGTGC
..............................................................................................................................((((.((...((((.((((((.(((((..((((....)))).)))))...)).))))))))..)).))))......................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR189783SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................TTGGGAGGCTGAGGCGGGTTTT..................................................................................................228.000.00--8.00------------------------------------------
..................................................................................................................................................................TCAGGAGTTCAAGATCAGCCTTAAG...............................................................256.000.00---6.00-----------------------------------------
..........................................................................................TAGGCCAGGTGTGGTGACAA............................................................................................................................................204.000.00----4.00----------------------------------------
...............................................................................................................................................................AGGTCAGGAGTTCAAGATTTTT.....................................................................222.000.00-------------2.00-------------------------------
.............................................................................................................................................AGGCGGGTGGATCACTTGAGGTCAGGAGCCC..............................................................................312.000.00-2.00-------------------------------------------
..........................................................................................................................................................................TCAAGATCAGCCTGGCCAACGGTG........................................................242.000.002.00--------------------------------------------
....................................................................................................................................................TGGATCACTTGAGGTCAGGCTCG...............................................................................232.000.00-2.00-------------------------------------------
......................................................................................................................................GAGGCTGAGGCGGGTGGATAAAA.............................................................................................232.000.00------------2.00--------------------------------
...........................................................................................................CTTATGCCTGTAATCCG..............................................................................................................................171.000.00---------------------------------1.00-----------
....................................................................................................................................GGGAGGCTGAGGCGGGTGGAAAG...............................................................................................231.000.00-----------------------------------1.00---------
............................................................................................GGCCAGGTGTGGTGGCGGT...........................................................................................................................................191.000.00---------------------1.00-----------------------
...................................................................................................................................................GTGGATCACTTGAGGTCAGGCAT................................................................................231.000.00----------------------------------1.00----------
....................................................................................................................................GGGAGGCTGAGGCGGGTGGCGGC...............................................................................................231.000.001.00--------------------------------------------
...............................................................................................................................................................AGGTCAGGAGTTCAAGATCAGCCGGAC................................................................271.000.00-1.00-------------------------------------------
..................................................................................................................................TTGGGAGGCTGAGGCGGGTGGCTA................................................................................................241.000.00--------------------------------------1.00------
.........................TAGTACCAAATATCCGCG...............................................................................................................................................................................................................181.000.00----------1.00----------------------------------
....................................................................................................................................GGGAGGCTGAGGCGGGTGGAATTT..............................................................................................241.000.00-----1.00---------------------------------------
...........................................................................................................................................TGAGGCGGGTGGATCACTTTAAG........................................................................................231.000.00------------------------------1.00--------------
.............................................................................................................................................................TGAGGTCAGGAGTTCAAGATCAGCCGGCC................................................................291.000.00-1.00-------------------------------------------
........................................................................................................................................................................GTTCAAGATCAGCCTGGCC...............................................................1901.001.00----------------------------1.00----------------
..........................................................................................................................CCAGCACTTTGGGAGGCTGAGGCGCCGC....................................................................................................281.000.00---------------------------1.00-----------------
........AGTGCCTCATAAGTGTATAGTACCAAATATCCA.................................................................................................................................................................................................................3311.001.00---------1.00-----------------------------------
...........................................................................................................................................TGAGGCGGGTGGATCACTCTA..........................................................................................211.000.00------1.00--------------------------------------
.........................................................................................................................................................................................................................ATACAAAAATCAGCCAGGACTA...........221.000.00--------------------------------------------1.00
.......................................................................................................................................................................AGTTCAAGATCAGCCTGGCCAAAAT..........................................................251.000.00-----------------------------------------1.00---
........................................................................TTCTCAGAATCTATAGAG................................................................................................................................................................181.000.00-----------------------------1.00---------------
..................................................................................................................................................................TCAGGAGTTCAAGATCAGCCTTC.................................................................231.000.00----------1.00----------------------------------
....................................................................................................................................................TGGATCACTTGAGGTCAGGCTTG...............................................................................231.000.00-1.00-------------------------------------------
...............................................................................................................................ACTTTGGGAGGCTGAGGCGGGTGGCCG................................................................................................271.000.001.00--------------------------------------------
......................................................................................................................................GAGGCTGAGGCGGGTGGATCAAGAT...........................................................................................251.000.00------------------------------------------1.00--
...............................................................................................................................................................AGGTCAGGAGTTCAAGATCATCTG...................................................................241.000.00---------1.00-----------------------------------
..........................................................................................TAGGCCAGGTGTGGTGGCAC............................................................................................................................................201.000.00-----------1.00---------------------------------
..................................................................................................................................................................TCAGGAGTTCAAGATCAGCCTTTC................................................................241.000.00---------------------------------------1.00-----
...........................................................................................................................................TGAGGCGGGTGGATCACTTTACT........................................................................................231.000.00-------1.00-------------------------------------
....................................................................................................................................................TGGATCACTTGAGGTCAGGCCC................................................................................221.000.00-1.00-------------------------------------------
.......................................................................................................................................................................................................................................CAGGCGTGTTGGTGGTTGC191.000.00------------------------1.00--------------------
.............................................................................................................................................AGGCGGGTGGATCACTTGAGGGAGG....................................................................................251.000.00-1.00-------------------------------------------
.........................................................................................................................................................................TTCAAGATCAGCCTGGCCA..............................................................1901.001.00-------------------------------------------1.00-
..........................................................................................TAGGCCAGGTGTGGTGGCACT...........................................................................................................................................211.000.00--------1.00------------------------------------
.............................................................................................................................................AGGCGGGTGGATCACTTGAGGTCAGGAGCCCG.............................................................................321.000.00-1.00-------------------------------------------
..................................................................................................................................................................TCAGGAGTTCAAGATCAGCCTGTAAA..............................................................261.000.00-------1.00-------------------------------------
...........................................................................................................................................................................CAAGATCAGCCTGGCCAACA...........................................................2001.001.00-----------------1.00---------------------------
................................................................................................AGGTGTGGTGGCTTATCTG.......................................................................................................................................191.000.00------1.00--------------------------------------
....................................................................................................................................GGGAGGCTGAGGCGGGTTGTG.................................................................................................211.000.001.00--------------------------------------------
.........................................................................................................................CCCAGCACTTTGGGAGGCTGAGGCGGGTGGCGG................................................................................................331.000.00--------------------------1.00------------------
..................................................................................................................................TTGGGAGGCTGAGGCGGGTGGATGC...............................................................................................251.000.001.00--------------------------------------------
...........................................................................................................................................TGAGGCGGGTGGATCACTCT...........................................................................................201.000.00------1.00--------------------------------------
.............................................................................................................................................................................AGATCAGCCTGGCCAACATCGCG......................................................231.000.001.00--------------------------------------------
..................................................................................................................................TTGGGAGGCTGAGGCGGGTTTAG.................................................................................................231.000.00--------------1.00------------------------------

Antisense strand
ATTGTCAGAGTGCCTCATAAGTGTATAGTACCAAATATCCAGCATTTTCGGTAAGTTCTAGTCTTTGACTCTTTCTCAGAATCTATATTTTAGGCCAGGTGTGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAAAGCTGTCTCTACTGAAAAAATACAAAAATCAGCCAGGCGTGTTGGTGGGTGC
..............................................................................................................................((((.((...((((.((((((.(((((..((((....)))).)))))...)).))))))))..)).))))......................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR189783SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR189782SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................CGGGTGGATCACTTGAGGTCAAAA.................................................................................. 242.000.00--------2.00------------------------------------
..............................................................................................................................................................................GATCAGCCTGGCCAACATGGTGACAG.................................................. 262.000.002.00--------------------------------------------
.........................................................................................................................................................................................................................ATACAAAAATCAGCCAGGCGTGTC......... 242.000.002.00--------------------------------------------
....................................................................................................................................................................AGGAGTTCAAGATCAGCCATA................................................................. 211.000.00--------------1.00------------------------------
.......................................................................................................................................................................AGTTCAAGATCAGCCTGTAGA.............................................................. 211.000.00----------------1.00----------------------------
........................................................................................................................................................................GCCAGGCTGATCTTGAAC................................................................ 1801.001.00-----1.00---------------------------------------
...................................................................................................................................................................................................GAAAGCTGTCTCTACTGAAACACC............................... 241.000.001.00--------------------------------------------
.............................................................................................................................................................CTGATCTTGAACTCCTGACCTCA...................................................................... 2301.001.00--------------------------------1.00------------
................................................................................................................................................CGGGTGGATCACTTGAGGTCAAGGT................................................................................. 251.000.00-----------------------1.00---------------------
...................................................................................................................................................................................................................................CAGCCAGGCGTGTTGGTTG.... 191.000.001.00--------------------------------------------
..........................................................................................................................................................................................................GTCTCTACTGAAAAAATACAAAGCAG...................... 261.000.00-------------------------1.00-------------------
.........................................................................................................GGCTTATGCCTGTAATCCCAGCC.......................................................................................................................... 231.000.00-----1.00---------------------------------------
..............................................................................................................................................................................GATCAGCCTGGCCAACATGGTGAACGGG................................................ 281.000.001.00--------------------------------------------
...............................................................................................................................................................AGGTCAGGAGTTCAAGATCATTTT................................................................... 241.000.00-------------------------------------1.00-------
........................................................................................................................................GGCTGAGGCGGGTGGATCACTTGAGCGCC..................................................................................... 291.000.00-1.00-------------------------------------------
......................................................................................................................................GAGGCTGAGGCGGGTGGTAC................................................................................................ 201.000.00----------------------------------------1.00----
........................................................................................................................................................................................................CTGTCTCTACTGAAAAAATGGGC........................... 231.000.001.00--------------------------------------------
............................................................................................................................................................................................................CTCTACTGAAAAAATACAAAAATCTGG................... 271.000.001.00--------------------------------------------
......................................................................................................................................................................TGGCCAGGCTGATCTTGAACTC.............................................................. 2201.001.00-----1.00---------------------------------------
....................................................................................................................................................................GCCAGGCTGATCTTGAACTCCT................................................................ 2201.001.00-----------1.00---------------------------------
........AGTGCCTCATAAGTGTTCG............................................................................................................................................................................................................................... 191.000.00-------1.00-------------------------------------
.......................TATAGTACCAAATATATA................................................................................................................................................................................................................. 181.000.00-------------------1.00-------------------------
...............................................................................................................................................................................ATCAGCCTGGCCAACAAGAG....................................................... 201.000.00----------------------1.00----------------------
.....................................................................................................................................................................GGAGTTCAAGATCAGCCTGGCCAACATGGCC...................................................... 311.000.00-1.00-------------------------------------------
.......................................................................................................................................................................................................................AAATACAAAAATCAGCCAGGCGTCTAT........ 271.000.001.00--------------------------------------------
....................................................AAGTTCTAGTCTTTGCTG.................................................................................................................................................................................... 181.000.00---------------1.00-----------------------------
........................................................................................................................................................TCACTTGAGGTCAGGAGTTCAAGATCAGCTA................................................................... 311.000.00------------------1.00--------------------------
.....................................................................................................................................GGAGGCTGAGGCGGGTGGATCACTTACC......................................................................................... 281.000.001.00--------------------------------------------
..........................................................................................................................................................................TCAAGATCAGCCTGGCCAATCA.......................................................... 221.000.00------------------------------------1.00--------
..............................................................................................................................................................................GATCAGCCTGGCCAACCCGC........................................................ 201.000.00-------------------------------1.00-------------
.................................................................................................GGTGTGGTGGCTTATGCCTGTAATGGCC............................................................................................................................. 281.000.00-1.00-------------------------------------------
......................................................................................................................................................................................................................AAAATACAAAAATCAGCCAGGCGTGG.......... 261.000.00-1.00-------------------------------------------
....................................................................................................................................................................CCAGGCTGATCTTGAACTCCT................................................................. 2101.001.00--------------------1.00------------------------
.................................................................................................................................................................................AGACAGCTTTCACCATGTTGGCCAGGCTG............................................ 2960.170.17-0.17-------------------------------------------