ID: uc010ign.2_intron_4_0_chr4_54310271_f.3p
GENE: (5)
chr4:54317876-54318125+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(12)
CELL-LINE 		(1)
CERVIX 		(2)
OTHER 		(1)
RRP40.ip 		(2)
SKIN

Sense strand
TATTGTGGTTCATTATTTTAGTTTTCTTCTTTTTTAAAAAAAACTCTGCTATTGAATAGCGTATATTGTTTATTTGGATTTGCATATATGATTACCATTTATTTGTTCAACCATTACTTCTTTTCATGTTAGATCCTCTAGGATAATTTTTCTTTTTCTCTATCTGATAGACATTCCTTTTTTTTTTTTTTTTGAGATAGAGCCTCACTGTGTTGCCCAGTCCGGAGTATAGTGGTGCAATCTCGGCTCA
...........................................................................................................................((.((((((((.....((((.......)))).......))))))))))...............................................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR040019(GSM532904)
G701T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTAAAG.....................................................278.000.004.001.002.00-1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTAAAG.......................................................257.000.003.003.001.00----------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGAATG....................................................265.000.001.00-1.00-3.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTCTG.........................................................234.000.001.002.00-1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTAAAG......................................................264.000.003.00-1.00----------------
..........................................................................................................................................................TTTCTCTATCTGATAGA...............................................................................1733.673.67--------3.67----------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTG........................................................2453.203.200.200.200.60-2.20--------------
..............................................................................................................CCATTACTTCTTTTCTTTG.........................................................................................................................193.000.002.001.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTCCTG........................................................233.000.002.00-1.00----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTAAAG..........................................................223.000.002.001.00-----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTCTG............................................................202.000.001.001.00-----------------
..............................................................................................................CCATTACTTCTTTTCTG...........................................................................................................................172.000.001.001.00-----------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGAAACG...................................................272.000.00---1.00--1.00------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTAATG......................................................252.000.00--1.00---1.00------------
........TTCATTATTTTAGTTTTCTTCTCTTT........................................................................................................................................................................................................................262.000.00-----2.00-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTAAAG............................................................202.000.001.001.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTCCTG.....................................................262.000.00-1.00--1.00--------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTAAAA.....................................................262.000.00-1.001.00----------------
........................................................................................................................................................TTTTTCTCTATCTGAACG................................................................................182.000.00-------2.00-----------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTGG...........................................................212.000.00--1.001.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTAAAG...........................................................212.000.002.00------------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTCCTG...........................................................202.000.00-1.001.00----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTATTG.............................................................192.000.00--1.00-1.00--------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTCCTG.........................................................222.000.00--2.00----------------
...............................................................................................CATTTATTTGTTCAATTGA........................................................................................................................................191.000.00--------------1.00----
.........TCATTATTTTAGTTTTCTTCTCTTT........................................................................................................................................................................................................................251.000.00-----1.00-------------
........................................................................................................................................................TTTTTCTCTATCTGATCG................................................................................181.000.00-------1.00-----------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTGTG..........................................................211.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCTA......................................................241.000.001.00------------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTCCT.........................................................231.000.00---1.00---------------
........................................................................................................................................................................AGACATTCCTTTTTTTTTTTTTTTTG........................................................2611.001.00---1.00---------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGCGT.....................................................251.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTCG.......................................................251.000.00-1.00-----------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGAAAG....................................................261.000.00----1.00--------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGCTC.....................................................251.000.00-----1.00-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTAATG.........................................................231.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGGAGG....................................................261.000.00-----1.00-------------
..............................................................................................................................................................................................................................CGGAGTATAGTGGTGAGCA.........191.000.00----------------1.00--
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTCG........................................................241.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCTAG.....................................................251.000.001.00------------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTGAATTG...................................................281.000.00----1.00--------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTAATG........................................................231.000.00--1.00----------------
.................................................................................................................................................................ATCTGATAGACATTCCTTTTTT...................................................................2211.001.00---1.00---------------
.............................................................................................................................................................................TTCCTTTTTTTTTTTTTTTTGAGGAC...................................................261.000.00-----1.00-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTCCG........................................................241.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTGGG........................................................241.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTCTTG.....................................................271.000.00-1.00-----------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGAAAGG...................................................271.000.00----1.00--------------
........................................................................TTTGGATTTGCATATTAT................................................................................................................................................................181.000.00----------1.00--------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTATG.......................................................241.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGAAATG...................................................271.000.001.00------------------
..............................................................................................................CCATTACTTCTTTTCTAT..........................................................................................................................181.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTATAG............................................................191.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCCCG.....................................................251.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTAATG.......................................................251.000.00----1.00--------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTACTG.........................................................221.000.00--1.00----------------
..........................TTCTTTTTTAAAAAAAACTCT...........................................................................................................................................................................................................2111.001.001.00------------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTCCG.......................................................251.000.00----1.00--------------
................................................................................................................................................AATTTTTCTTTTTCTCTTCC......................................................................................201.000.00-----1.00-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTGG............................................................201.000.00----1.00--------------
..........................................................................................ATTACCATTTATTTGATGC.............................................................................................................................................191.000.00-----------1.00-------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTCTTG......................................................261.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTAAAA......................................................261.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTGT..........................................................221.000.001.00------------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGTTTG....................................................261.000.00-----1.00-------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTCTTG......................................................251.000.001.00------------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTAATG......................................................261.000.00------1.00------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGTTT.....................................................251.000.00------1.00------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCCGG.....................................................251.000.00---1.00---------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTGCCC.....................................................251.000.00---1.00---------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTAAGG...........................................................201.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTAAAG........................................................241.000.00--1.00----------------
..............................................................................................................CCATTACTTCTTTTCCA...........................................................................................................................171.000.001.00------------------
..............................................................................................................................................................................TCCTTTTTTTTTTTTTTTTGAGATTCCC................................................281.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTCG..........................................................221.000.00-1.00-----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTAAGG..........................................................221.000.001.00------------------
.....................TTTTCTTCTTTTTTAAAAACAG...............................................................................................................................................................................................................221.000.001.00------------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTAATG.....................................................261.000.00--1.00----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTGGC..........................................................211.000.00---1.00---------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTCG.............................................................181.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTAAAG...........................................................201.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTAAAG............................................................191.000.00-1.00-----------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCACT.....................................................251.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTGAAATG...................................................281.000.00------1.00------------
..........................................................................................................................................................................ACATTCCTTTTTTTTAAAG.............................................................191.000.001.00------------------
..............................................................................................................................................................................................................ACTGTGTTGCCCAGTCCGGTCTC.....................231.000.00---1.00---------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTAATT.....................................................261.000.00--1.00----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTACTG........................................................231.000.00------1.00------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCAAG.....................................................251.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTCGG........................................................231.000.00---1.00---------------
......................................................................................................................................................................................................AGAGCCTCACTGTGTTGCCCAGGGGG..........................261.000.00---1.00---------------
............................................................................................................................................................................ATTCCTTTTTTTTTTTTTTTTCGGG.....................................................251.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTCT........................................................241.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTCTTG.........................................................231.000.00-1.00-----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTAAG......................................................261.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTATG......................................................261.000.00--1.00----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTATT......................................................261.000.00---1.00---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTAAAT........................................................241.000.00-1.00-----------------
...........................................................................................................................................................................CATTCCTTTTTTTTTTTTTTTTATTT.....................................................261.000.00------1.00------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTCC........................................................241.000.00-----1.00-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTGG.............................................................191.000.00----1.00--------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTCG..............................................................181.000.00-1.00-----------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTCTTC.......................................................251.000.00--1.00----------------
..............................................................................................................CCATTACTTCTTTTCCTTG.........................................................................................................................191.000.001.00------------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTGAG......................................................2640.500.50---0.25-0.25-------------
..............................................................................................................................................................................................TTTGAGATAGAGCCTCACTG........................................2060.330.33-----0.33-------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTGA.......................................................2540.250.25---0.25---------------
..........................................................................................................................................................................ACATTCCTTTTTTTTTTTTTTTTGCAAG....................................................2850.203.20------0.20------------
...................................................................................................................................................TTTTCTTTTTCTCTATCT.....................................................................................1890.110.11------0.11------------

Antisense strand
TATTGTGGTTCATTATTTTAGTTTTCTTCTTTTTTAAAAAAAACTCTGCTATTGAATAGCGTATATTGTTTATTTGGATTTGCATATATGATTACCATTTATTTGTTCAACCATTACTTCTTTTCATGTTAGATCCTCTAGGATAATTTTTCTTTTTCTCTATCTGATAGACATTCCTTTTTTTTTTTTTTTTGAGATAGAGCCTCACTGTGTTGCCCAGTCCGGAGTATAGTGGTGCAATCTCGGCTCA
...........................................................................................................................((.((((((((.....((((.......)))).......))))))))))...............................................................................
.........................................................................................................106...........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR040019(GSM532904)
G701T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
.......................................................................................................................................................................TAGACATTCCTTTTTTAAA................................................................ 192.000.00------2.00------------
....................................................................TTTATTTGGATTTGCACT.................................................................................................................................................................... 181.000.00---------------1.00---
....................................................................TTTATTTGGATTTGCATAACTG................................................................................................................................................................ 221.000.00---------1.00---------
.............................................................................................................................ATGTTAGATCCTCTAATT........................................................................................................... 181.000.00-------1.00-----------
....................................................................TTTATTTGGATTTGCAGTA................................................................................................................................................................... 191.000.00-------------1.00-----
.......................................................................................................................................................................................................GAGCCTCACTGTGTTGCCCAGCGTT.......................... 251.000.00-----------------1.00-
.....................................................................................................................................................................................................................................TAGTGGTGCAATCTCGGCTCAGACC 251.000.00---1.00---------------
.......................................................................................................................................................................................................................................GTGGTGCAATCTCGGCTAGCA 211.000.00------------------1.00
..............................................................................................................................................................................TCCTTTTTTTTTTTTTTTTGAGATGGC................................................. 271.000.00------------1.00------