ID: uc010ifo.2_intron_9_0_chr4_39865080_r.3p
GENE: (23)
chr4:39865030-39865279-


(1)
B-CELL
(3)
BRAIN
(6)
CELL-LINE
(4)
HEART
(2)
LIVER
(3)
OTHER
(20)
SKIN
(1)
XRN.ip

Sense strand
AGTCACAATGATTTGATTTGATTGTGAAAGTCACAATCCCCTGTGTTAAGTTCATGGACTCAAAGTAGCTTTCCCATATTTGTACGTCATTTTAAACATAAATTATGCTCTAAGGACCTTACATTCAAAAAGGGACGAAAGCATTTTTATGAATGATAGTGGTTATAGGAAATGTTTATTTCTTTTTTGTTTGTTTATAGTAAATCTGATATGTCTCGCTTGCGATTAGCTGCTGGTAGTGCCATAATGA
.........................................................................................................((((.(((.......(((..((((((((((...((((((((((....(((((....))))).))))))))))..))))))))))..)))))).))))................................................
..............................................................................................95..............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................AAGGGACGAAAGCATC.........................................................................................................1633.000.0033.00--------------------------------------
...............................................................................................................................................................................................TGTTTATAGTAAATCTGATAT......................................2114.004.00---------1.00-------1.00------1.00-----1.00--------
........................................................................................................................................................................................TTTTGTTTGTTTATAGTAA...............................................1913.003.00--2.00------------------------1.00-----------
...........................................................................................................................................................................ATGTTTATTTCTTTTTTGTTTGTTTATAGC.................................................303.000.00-3.00-------------------------------------
...................................................................................................................................................................................TTCTTTTTTGTTTGTTTATAGTAA...............................................2412.002.00----2.00----------------------------------
............................................................................................................................................................................TGTTTATTTCTTTTTTGTTTGTTTACAGC.................................................292.000.00-2.00-------------------------------------
...................................................................................................AAATTATGCTCTAAGGACCT...................................................................................................................................2012.002.00---2.00-----------------------------------
............................................................................................................................................................................................GTTTGTTTATAGTAAATCTGATAT......................................2412.002.00--------------------------1.00--1.00---------
.......................................................................................................................................................................................TTTTTGTTTGTTTATAGTAA...............................................2012.002.00---------------1.00------1.00----------------
..........................................................................................................................................................................................TTGTTTGTTTATAGTAAATCTGATAT......................................2612.002.00--2.00------------------------------------
.............................................................................................................................................................................................TTTGTTTATAGTAAATCTGATAT......................................2312.002.00-------2.00-------------------------------
.......................................................................................................................................................................................................GTAAATCTGATATGTCTCGC...............................2012.002.00----------2.00----------------------------
.............................................................................................................................................................................GTTTATTTCTTTTTTGTTCCT........................................................212.000.00-1.00---------1.00---------------------------
...................................................................................................................................................................................................TATAGTAAATCTGATAT......................................1731.671.67------------0.33---------------------0.330.330.330.33-
.......................................................................................................................................CGAAAGCATTTTTATATTG................................................................................................191.000.00-----1.00---------------------------------
..................................................................................................................................................................................TTTCTTTTTTGTTTGTTCTG....................................................201.000.00-1.00-------------------------------------
..............................TCACAATCCCCTGTGAAG..........................................................................................................................................................................................................181.000.00-------------------------------1.00-------
..............................................................................................................................................................................TTTATTTCTTTTTTGTTTGTTTATAGTAA...............................................2911.001.00------1.00--------------------------------
...................................................................................................................................................................................TTCTTTTTTGTTTGTTTATAG..................................................2111.001.00---------1.00-----------------------------
...............................................................................................................................................................................TTATTTCTTTTTTGTGCGT........................................................191.000.00-1.00-------------------------------------
.................................................................................................................................................................................ATTTCTTTTTTGTTTGTTTAGGG..................................................231.000.00--------1.00------------------------------
..................................................................................................................................................................................TTTCTTTTTTGTTTGTTTATGAG.................................................231.000.00-1.00-------------------------------------
......................................................................................................................................................................................TTTTTTGTTTGTTTATAGTAA...............................................2111.001.00--------------------------------1.00------
................................................................................................................................AAAGGGACGAAAGCATTT........................................................................................................1811.001.00--------------------1.00------------------
.............................................................................................................................................................................GTTTATTTCTTTTTTGTCTCT........................................................211.000.00-----------1.00---------------------------
............................................................................................................................................................................................................................TGCGATTAGCTGCTGGTAGTGCC.......2311.001.00----------------1.00----------------------
.......................................................................................................................................CGAAAGCATTTTTATTTTG................................................................................................191.000.00-----1.00---------------------------------
..............................................................................................................................................................................................................TGATATGTCTCGCTTGCGATT.......................2111.001.00------1.00--------------------------------
......................................................................................................................................................................................................AGTAAATCTGATATGTCTCGCT..............................2211.001.00----1.00----------------------------------
............................................................................................................................................................................................................................TGCGATTAGCTGCTGGTAGTGCCATA....2611.001.00--------------1.00------------------------
............................................................................................................................................................................................................TCTGATATGTCTCGCTTGCGATT.......................2311.001.00------------1.00--------------------------
.....................................................ATGGACTCAAAGTAGCTTTCCCA..............................................................................................................................................................................2311.001.00-------------------1.00-------------------
...............................................................................................................................................................................TTATTTCTTTTTTGTTTGTTTATAGC.................................................261.000.00--------1.00------------------------------
..............................................................................................................................................ATTTTTATGAATGATAGTGGTTATAGG.................................................................................2711.001.00---------------------1.00-----------------
............................................................................................................................................................................................................................TGCGATTAGCTGCTGGTAGTG.........2111.001.00-----------------------1.00---------------
...................................................................................................................................GGGACGAAAGCATTTTTATGA..................................................................................................2111.001.00---1.00-----------------------------------
...............................................................................................................................AAAAGGGACGAAAGCATTTTTATG...................................................................................................2411.001.00---1.00-----------------------------------
.......................................................................................................................................CGAAAGCATTTTTATTCGT................................................................................................191.000.00-----1.00---------------------------------
.................................................................................................................................................................................................TTTATAGTAAATCTGATAT......................................1920.500.50---------------------------------0.50-----
....................................................................................................................................................................................................ATAGTAAATCTGATAT......................................1640.250.25--------------------------------------0.25

Antisense strand
AGTCACAATGATTTGATTTGATTGTGAAAGTCACAATCCCCTGTGTTAAGTTCATGGACTCAAAGTAGCTTTCCCATATTTGTACGTCATTTTAAACATAAATTATGCTCTAAGGACCTTACATTCAAAAAGGGACGAAAGCATTTTTATGAATGATAGTGGTTATAGGAAATGTTTATTTCTTTTTTGTTTGTTTATAGTAAATCTGATATGTCTCGCTTGCGATTAGCTGCTGGTAGTGCCATAATGA
.........................................................................................................((((.(((.......(((..((((((((((...((((((((((....(((((....))))).))))))))))..))))))))))..)))))).))))................................................
..............................................................................................95..............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................ACAATCCCCTGTGTTAA......................................................................................................................................................................................................... 171.000.00----------------------------1.00----------
........................................................................................................................................................................................TTTTGTTTGTTTATAGCAG............................................... 191.000.00-------------1.00-------------------------
................................ACAATCCCCTGTGTTAATAG...................................................................................................................................................................................................... 201.000.00-------------------------1.00-------------
..............................TCACAATCCCCTGTGTTATGTT...................................................................................................................................................................................................... 221.000.00------------------1.00--------------------