ID: uc010ifo.2_intron_27_0_chr4_39924369_r.3p
GENE: (5)
chr4:39924319-39924568-


(5)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(5)
SKIN

Sense strand
ACTGTTGTAATAGTCAACAAAAGGAGAAAGAAAATAGAGCAGCCAAAATTTCTCTGCCATTATTGGCACTGTCCCTCAAGTGAAAATCCTTTACATGTGAGATTGTTGTTTTAAACTAGGACGTTTAATTTCCTATTAGAAGCTTGAATTCTCTTCTTTTCCTCCTCCTACTACTTATTCTTTTTTTTTTTTTTTTATAGCAATAGCCACAATAAGAAGGTACAAATGCACATGCTAGATTTGATGAGTT
..................................................................................................((((.....(((((.((.(((((.........))))))).)))))......)))).................................................................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR343337SRR343336SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTAT....................................................2424.004.001.501.500.50--0.50----------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATT...................................................2523.504.002.001.50--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTG..................................................2623.504.001.001.000.50--1.00----------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTAAAG..................................................263.000.003.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAAAG..................................................273.000.00-1.00-1.00-1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTCG.....................................................253.000.00-1.00-2.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTCTAG........................................................213.000.00---3.00------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTATG.....................................................233.000.001.001.00-1.00------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTGG.....................................................253.000.001.00-1.00--1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTATAG......................................................242.000.00-1.00--1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTCAG...................................................262.000.001.001.00--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTACT......................................................242.000.00----1.00-1.00---------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAAG...................................................262.000.00-2.00--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTAGG.....................................................232.000.00-1.00--1.00-----------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTTTTTG.........................................................242.000.001.00----1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTCTTG.....................................................252.000.00--1.001.00------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTATAG.....................................................272.000.001.00--1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTAAAG........................................................212.000.001.001.00--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTCCTG........................................................222.000.00--2.00-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTAAAT...................................................262.000.001.001.00--------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATATTGT...............................................241.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTATAG...................................................271.000.00-----1.00----------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATATAT................................................231.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTGGGC...................................................271.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTCACG..................................................271.000.00--1.00-------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTACTA..................................................261.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTAAAG......................................................231.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTAAAG.....................................................241.000.001.00---------------------------
.........................................................................................................................................................................................................AATAGCCACAATAAGAAGG..............................1911.001.00------------------1.00---------
............................................................................................................................................................................ACTTATTCTTTTTTTTTACT..........................................................201.000.00-----1.00----------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATAAAGG...............................................251.000.00-1.00--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTACTG....................................................241.000.001.00---------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTTTTTG....................................................281.000.001.00---------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTATAG...........................................................211.000.00--1.00-------------------------
..................................................................................................................................................................................................................AATAAGAAGGTACAAATGCACATGC...............2511.001.00-------------1.00--------------
............................................................................................................................................................................ACTTATTCTTTTTTTCTTG...........................................................191.000.00---1.00------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATCGG.................................................231.000.00-1.00--------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATAGTT................................................231.000.00-----1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTGTTG........................................................221.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTCCG......................................................231.000.00--1.00-------------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTG.............................................................201.000.00--1.00-------------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTATAAAGG...............................................261.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAACCG.................................................281.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTATG....................................................251.000.00-1.00--------------------------
.......................................................................................................................................................................CTACTACTTATTCTTTTTTTTTTTTTTTTATAG..................................................3311.001.00--1.00-------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATAACAT...............................................251.000.00-----1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTGAT......................................................241.000.00-----1.00----------------------
...........................................................................................................................................................................TACTTATTCTTTTTTTTTGT...........................................................201.000.00-----1.00----------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTCTTT..........................................................231.000.00------1.00---------------------
.........................................................................................................................................................................ACTACTTATTCTTTTGTT...............................................................181.000.00---1.00------------------------
..............................................................................................ATGTGAGATTGTTGTGCCA.........................................................................................................................................191.000.00--------------------1.00-------
...................AAAGGAGAAAGAAAATAGAGCAG................................................................................................................................................................................................................2311.001.00---------1.00------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTATAG..................................................2511.001.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTCTGG....................................................261.000.00------1.00---------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTATAG.........................................................231.000.00---1.00------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTATAG......................................................261.000.001.00---------------------------
...........................................................................................................................................................................TACTTATTCTTTTTTTTTTTTATAG......................................................251.000.00--1.00-------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATACTA................................................241.000.00--1.00-------------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTATCCTG................................................251.000.001.00---------------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTTTTATAG.......................................................261.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTAAAG....................................................251.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTCTAG..................................................271.000.00---1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAAAT..................................................271.000.001.00---------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTAG.................................................251.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTGGAA.......................................................221.000.00----1.00-----------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTTCG................................................261.000.001.00---------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTGGC................................................261.000.00------1.00---------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTTA.................................................251.000.00---1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTATTG......................................................231.000.00-1.00--------------------------
........................................................................................................................................................................................................................AAGGTACAAATGCACATGCTAGATTT........2611.001.00-----------------1.00----------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTCGAG......................................................241.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTAAAT......................................................231.000.00--1.00-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTATT...................................................2611.001.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTGG.....................................................241.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTAAGG...................................................261.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTATTT..................................................2711.001.00-----1.00----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAC....................................................251.000.00--1.00-------------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTATATAAT...............................................261.000.00---1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTCCAG......................................................231.000.00--1.00-------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATAGGTA...............................................241.000.00---1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTATGG...................................................261.000.001.00---------------------------
...........................................................................................................................................................................TACTTATTCTTTTTTTTTTTTAAG.......................................................241.000.00-1.00--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTTCTT...................................................271.000.00---1.00------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTCGG........................................................221.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTGG.........................................................201.000.00-1.00--------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATAGAAG...............................................241.000.001.00---------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTATAG.......................................................251.000.00---1.00------------------------
..................................................................................................................................................................TCCTCCTACTACTTATTCTTTTTTTTTTATAG........................................................321.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTGGCT.....................................................241.000.00------1.00---------------------
........................................................................................................................................................................................................................AAGGTACAAATGCACATG................1811.001.00---------------1.00------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTAACTG.................................................271.000.00-1.00--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTGAG.....................................................251.000.00----1.00-----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTC......................................................241.000.00----1.00-----------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTAGCT..................................................261.000.00----1.00-----------------------
...........................................................................................................................................................................TACTTATTCTTTTTTTTATAG..........................................................211.000.00---1.00------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATACTGT...............................................241.000.001.00---------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTG..........................................................221.000.001.00---------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATACGGA...............................................251.000.00------1.00---------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTTTG................................................2821.004.000.50----0.50----------------------
...........................................................................................................................................................................TACTTATTCTTTTTTTTTTTTTTATAG....................................................271.000.00--1.00-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTGGGT..................................................271.000.00----1.00-----------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATGGAC................................................241.000.00------1.00---------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTCTTG.......................................................221.000.00--1.00-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTCG........................................................211.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTGGCG.....................................................241.000.00-1.00--------------------------
..................................................................................................................................................AATTCTCTTCTTTTCCCGGT....................................................................................201.000.00--------------1.00-------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTACCG..................................................241.000.00---1.00------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTCTTT......................................................261.000.00--1.00-------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATG...................................................2521.004.00-0.500.50-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTAATT....................................................251.000.00-1.00--------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATACGG................................................241.000.00----1.00-----------------------
......................................................................................................................................................................................TTTTTTTTTTTTTTATAGCGG...............................................211.000.00----1.00-----------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTTGG................................................261.000.00--1.00-------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTG...........................................................211.000.00-------1.00--------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTGG.......................................................221.000.001.00---------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATTGGG................................................261.000.00----1.00-----------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTTTTATA...................................................2911.001.00--1.00-------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATATTTG...............................................251.000.00-1.00--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTAAG.......................................................231.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTATAG.....................................................251.000.00----1.00-----------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTTTT................................................2821.004.000.50--0.50------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTACAG...........................................................191.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTCTGG........................................................211.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTATAG....................................................251.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTGG............................................................181.000.00-1.00--------------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTTTATAG........................................................251.000.00----1.00-----------------------
............................................................................................ACATGTGAGATTGTTGTTTT..........................................................................................................................................2011.001.00---------1.00------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTAT....................................................2511.001.00--1.00-------------------------
.................................................................................................................AACTAGGACGTTTAATTTC......................................................................................................................1911.001.00-----------1.00----------------
.................................................................................................................................................................................................................CAATAAGAAGGTACAAATGCACATGCT..............2711.001.00----------------1.00-----------
..........................................................................................................................................................................................................ATAGCCACAATAAGAAGGTA............................2011.001.00-------------------1.00--------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTACTG..................................................251.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTGGGC....................................................251.000.00------1.00---------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATATAA................................................241.000.001.00---------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTCTTG..................................................271.000.00--1.00-------------------------
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATATTTG...............................................241.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTCTTG......................................................241.000.00---1.00------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTATTTTG................................................2911.001.00--1.00-------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATACG.................................................231.000.00--1.00-------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTATA.......................................................251.000.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTGGTT..................................................271.000.00----1.00-----------------------
.......................................................................................................................................................................CTACTACTTATTCTTTTTTTTTTTATAG.......................................................281.000.00--1.00-------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATCAAG................................................241.000.00---1.00------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTCG........................................................221.000.00-----1.00----------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTTATTTT.................................................291.000.00----1.00-----------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTATG.......................................................221.000.00--1.00-------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTTTCTTT..................................................271.000.001.00---------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTTTTATAG..................................................3011.001.00-1.00--------------------------
.............................................................................................................................................................................CTTATTCTTTTTTTTTTTTTTATG.....................................................241.000.00-1.00--------------------------
.........................................................................................................................................................................ACTACTTATTCTTTTTTTTTATAG.........................................................241.000.00---1.00------------------------
.......................................................................................................................................................................CTACTACTTATTCTTTTTTTTTTTATAA.......................................................281.000.001.00---------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTATTG........................................................221.000.00-1.00--------------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTAT....................................................2360.830.83-0.67-0.17------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTTTA................................................2820.504.00-0.50--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTCG.................................................2720.504.000.50---------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATATTTC...............................................2920.500.50---0.50------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATA...................................................2520.500.500.50---------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATGG..................................................2620.504.00-0.50--------------------------
............................................................................................................................................................................ACTTATTCTTTTTTTTTTTTTTTTA.....................................................2520.500.500.50---------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTTT.................................................2720.504.00-----0.50----------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTTG.................................................2720.504.00-0.50--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATATTAT...............................................2920.500.50-0.50--------------------------
..............................................................................................................................................................................TTATTCTTTTTTTTTTTTTTTTATTT..................................................2620.504.00-----0.50----------------------
........................................................................................................................................................................TACTACTTATTCTTTTTTTTTTTTTT........................................................2620.500.50----0.50-----------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTATAG..................................................2370.430.430.140.14-0.14------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATAG..................................................2280.250.25-0.120.12-------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATAAT.................................................2560.170.17--0.17-------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATA...................................................2360.170.17---0.17------------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTATTAAA................................................2760.170.83---0.17------------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTATCTAG................................................2760.170.830.17---------------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTATTG..................................................2560.170.83-----0.17----------------------
...............................................................................................................................................................................TATTCTTTTTTTTTTTTTTTTATTTG.................................................2660.170.83-0.17--------------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTATAAAG................................................2660.170.17--0.17-------------------------
.......................................CAGCCAAAATTTCTCT...................................................................................................................................................................................................1670.140.14---------------------------0.14
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATAGTGG...............................................2580.120.25------0.12---------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTTTATAG...................................................2980.120.12---0.12------------------------
..........................................................................................................................................................................CTACTTATTCTTTTTTTTTTTTTTT.......................................................2580.120.12-0.12--------------------------
..................................................................................................................................................................................TCTTTTTTTTTTTTTTTTATAGTTT...............................................2580.120.25-----0.12----------------------

Antisense strand
ACTGTTGTAATAGTCAACAAAAGGAGAAAGAAAATAGAGCAGCCAAAATTTCTCTGCCATTATTGGCACTGTCCCTCAAGTGAAAATCCTTTACATGTGAGATTGTTGTTTTAAACTAGGACGTTTAATTTCCTATTAGAAGCTTGAATTCTCTTCTTTTCCTCCTCCTACTACTTATTCTTTTTTTTTTTTTTTTATAGCAATAGCCACAATAAGAAGGTACAAATGCACATGCTAGATTTGATGAGTT
..................................................................................................((((.....(((((.((.(((((.........))))))).)))))......)))).................................................................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR343337SRR343336SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTATTTGT................................................ 233.000.00--------3.00-------------------
..........................................................................................................................................................TCTTTTCCTCCTCCTATTG............................................................................. 192.000.00-------2.00--------------------
.........................................................................................................................................................TTCTTTTCCTCCTCCTACAAT............................................................................ 211.750.00---------------------1.000.75-----
.........................................................................................................................................................AGTAGGAGGAGGAAAAGAA.............................................................................. 1921.001.00----------1.00-----------------
...............................................................................................................................................................TCCTCCTCCTACTACTGT......................................................................... 181.000.00------------1.00---------------
.................................................................................................................................................................ATAAGTAGTAGGAGGAG........................................................................ 1720.500.50-----------------------0.50----
.........................................................................................................................................................GTAGGAGGAGGAAAAGAA............................................................................... 1840.500.50-------------------------0.250.25-
.........................................................................................................................................................TTCTTTTCCTCCTCCTACTAA............................................................................ 210.500.00------------------------0.50---
.........................................................................................................................................................TTCTTTTCCTCCTCCTACTAATA.......................................................................... 230.500.00----------0.50-----------------