ID: uc010ifm.2_intron_1_0_chr4_39574084_r.5p
GENE: (1)
chr4:39585355-39585604-


(2)
B-CELL
(1)
BRAIN
(15)
BREAST
(22)
CELL-LINE
(11)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
CAGTGTGCATACTTGTGTTCTAGCAATTCTTCCCTGAGGAGATTAATCAGGTGTGTAAGAATGTATTTATAGGAACATATACACAGCATTGTTTTTCATATATAAATTTGGAAATGATGAAATTAAATGAAATACTGGTGCAGCATTGAAAGATAAGTTTGAGCTATTTGGAGGCATCAGTTTGTGACTGATTGGTAAGTGTGGCAGAAAGAGCAAAATAACTCAGGGTCTTATCTTGTAAAATCTGTGC
.....................................................................................................................................((((((((....((.(((....(((....))).))).)).)))))))).(((.((............)).)))............................................
.......................................................................................................104...................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormDRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532878(GSM532878)
G691T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532872(GSM532872)
G652T. (cervix)
............................................................................................................TGGAAATGATGAAATAGAA...........................................................................................................................19053.0043.00-6.00---8.00-4.004.00---2.00-2.002.001.00-2.002.00----2.001.00-1.001.00---1.001.001.001.001.00---1.00---1.001.00---1.00-1.00----1.001.001.00-1.00---1.00-
............................................................................................................TGGAAATGATGAAAT...............................................................................................................................15043.0043.0014.00-10.008.008.00------3.00------------------------------------------------------
............................................................................................................TGGAAATGATGAAATAGAT...........................................................................................................................1907.0043.00----------2.00--2.00---------------------------------------1.00-1.00-------1.00--
............................................................................................................TGGAAATGATGAAATATA............................................................................................................................1806.0043.00--------------------1.00----1.00-----------1.00----------1.00-----1.00----------1.00
............................................................................................................TGGAAATGATGAAATCG.............................................................................................................................1705.0043.00-4.00-1.00--------------------------------------------------------------
............................................................................................................TGGAAATGATGAAATAGC............................................................................................................................1804.0043.00-2.00----1.00-------------------------------------------1.00---------------
............................................................................................................TGGAAATGATGAAATAGCG...........................................................................................................................1903.0043.00------2.00----------1.00------------------------------------------------
............................................................................................................TGGAAATGATGAAATCGA............................................................................................................................1803.0043.00-1.00---------------------------1.00---------1.00--------------------------
............................................................................................................TGGAAATGATGAAATAGG............................................................................................................................1802.0043.00--------------------------------------1.00----------------------1.00----
............................................................................................................TGGAAATGATGAAATATAG...........................................................................................................................1902.0043.00------1.00---1.00-------------------------------------------------------
............................................................................................................TGGAAATGATGAAATTGAGT..........................................................................................................................202.000.00---------------------2.00--------------------------------------------
......................................................................................................................................................................................TGTGACTGATTGGTAACGGA................................................201.000.00--------------------------1.00---------------------------------------
............................................................................................................TGGAAATGATGAAATAGGG...........................................................................................................................1901.0043.00----------------------------------------------1.00-------------------
...........................................................................................................................................................AGTTTGAGCTATTTGGAGGGTCG........................................................................231.000.00-----------------------------------------------1.00------------------
..................................................................................................................................................................................AGTTTGTGACTGATTTGAA.....................................................191.000.00-----------------------1.00------------------------------------------
....................................................................ATAGGAACATATACACAGCA..................................................................................................................................................................2011.001.00-----------------------1.00------------------------------------------
............................................................................................................TGGAAATGATGAAATGGAG...........................................................................................................................1901.0043.00-----------------------------------------1.00------------------------
............................................................................................................TGGAAATGATGAAATCTAG...........................................................................................................................1901.0043.00-----------------1.00------------------------------------------------
.....................................................................................................................................................................................TTGTGACTGATTGGTATCT..................................................191.000.00-----------------------------------------------------------1.00------
...........................................................................................................TTGGAAATGATGAAA................................................................................................................................1501.001.00--1.00---------------------------------------------------------------
...........................................................................................................TTGGAAATGATGAAATAGAA...........................................................................................................................201.000.00------------------------------1.00-----------------------------------
............................................................................................................TGGAAATGATGAAATTGA............................................................................................................................181.000.00----------------------1.00-------------------------------------------
............................................................................................................TGGAAATGATGAAATTGAG...........................................................................................................................191.000.00--------------------1.00---------------------------------------------
............................................................................................................TGGAAATGATGAAATAC.............................................................................................................................1701.0043.00------------------------------------------1.00-----------------------

Antisense strand
CAGTGTGCATACTTGTGTTCTAGCAATTCTTCCCTGAGGAGATTAATCAGGTGTGTAAGAATGTATTTATAGGAACATATACACAGCATTGTTTTTCATATATAAATTTGGAAATGATGAAATTAAATGAAATACTGGTGCAGCATTGAAAGATAAGTTTGAGCTATTTGGAGGCATCAGTTTGTGACTGATTGGTAAGTGTGGCAGAAAGAGCAAAATAACTCAGGGTCTTATCTTGTAAAATCTGTGC
.....................................................................................................................................((((((((....((.(((....(((....))).))).)).)))))))).(((.((............)).)))............................................
.......................................................................................................104...................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormDRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532878(GSM532878)
G691T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532872(GSM532872)
G652T. (cervix)
....................................................................................................TATAAATTTGGAAATGCATG.................................................................................................................................. 202.000.00---------2.00--------------------------------------------------------
...................................................TGTGTAAGAATGTATTTCAG................................................................................................................................................................................... 201.000.00--------------------------------------------------------------1.00---
....................................................GTGTAAGAATGTATTTATCTT................................................................................................................................................................................. 211.000.00-------------------------------1.00----------------------------------
............................................................................................................................AAATGAAATACTGGTGCTTC.......................................................................................................... 201.000.00-------------------------------------------1.00----------------------
.........................................................................................................ATTTGGAAATGATGAATTG.............................................................................................................................. 191.000.00---------1.00--------------------------------------------------------