ID: uc010iew.2_intron_4_0_chr4_26638908_f.5p
GENE: (5)
chr4:26638858-26639107+


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(1)
AGO3.ip
(3)
BRAIN
(1)
BREAST
(19)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
AGAGTTTAAATAGTATGTGCACTGAACTGAGTATCCCACTGGCACGAAAGGTACTTTTAAACATTTTTCTGTTTAAGTATTTCATTGTGAATCAAATACAGAAAGTATCATGAAGTTATATAACTGTTAGGCACATTTATTTATTTATTTATTTAGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTG
.............................................................................................................................................................(((((((.....)))))))..(((((.....((((....))))...)))))..........................................
...............................................................................................................................128.............................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................ACATTTATTTATTTATTTATTTACG.............................................................................................25521.000.00272.00178.0040.0030.00----1.00--------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCTTG............................................................................................265.000.00---5.00-------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTCTTG................................................................................................224.000.00--4.00--------------------------------------
....................................................................................................................................ACATTTATTTATTTATTCACG.................................................................................................214.000.00--2.002.00-------------------------------------
..........................................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCTCCTGGGGC...............334.000.00----3.001.00-----------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCG..............................................................................................243.000.00-1.00-2.00-------------------------------------
.................................................................................................................................................................................................................TCACTGCAACCTCCGCCTCCTGGGTTCCCGC..........313.000.00-----3.00-----------------------------------
............................................................................................................................................................................................GTGCAGTGGCGCGATCTTGGAA........................................223.000.00-------------2.00------------------------1.00--
.....................................................................................................................................CATTTATTTATTTATTTATCTTG..............................................................................................233.000.00-1.00-2.00-------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTAAG.............................................................................................253.000.00-1.002.00--------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCTCG............................................................................................262.000.00--1.001.00-------------------------------------
.....................................................................................................................................................................................................CGCGATCTTGGCTCACTGCATATA.............................242.000.00------------2.00----------------------------
....................................................................................................................................ACATTTATTTATTTATTCTTG.................................................................................................212.000.001.001.00---------------------------------------
.....................................................................................................................................................................................................CGCGATCTTGGCTCACTGCATTAA.............................242.000.00-------2.00---------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATCG................................................................................................222.000.00-1.00---------1.00-----------------------------
..............................................................................................................................................................................................................GGCTCACTGCAACCTCCGCCTATA....................242.000.00----------------2.00------------------------
....................................................................................................................................ACATTTATTTATTTATTCATG.................................................................................................212.000.00--1.001.00-------------------------------------
..........................................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCTCCTCGGG................322.000.00-----2.00-----------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTAACAG...........................................................................................262.000.00--1.001.00-------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTCTTG............................................................................................252.000.00--1.001.00-------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTCTAG............................................................................................252.000.00--1.001.00-------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATCTTG..............................................................................................242.000.00---2.00-------------------------------------
..............................................................................................................................TTAGGCACATTTATTTATTTATTT....................................................................................................2421.501.50-----1.50-----------------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGAG....................291.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATCATG..............................................................................................241.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCGAG............................................................................................261.000.00----1.00------------------------------------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCGGGT..................271.000.00----1.00------------------------------------
......................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGATA..............................................221.000.00--------------------------1.00--------------
.................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGCGCGAGAC.............................................281.000.00-------------------1.00---------------------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCTGGGATTC.............321.000.00-----1.00-----------------------------------
.....................................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAAAA.............................241.000.00------1.00----------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTACG..............................................................................................241.000.001.00----------------------------------------
...................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCTGGGTTCCCGC..........291.000.00----1.00------------------------------------
...................................................................................................................................CACATTTATTTATTTATTTCTCG................................................................................................231.000.00--1.00--------------------------------------
..........................................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCGGGT....................281.000.00-----1.00-----------------------------------
...................................................................................................................................CACATTTATTTATTTATCTTG..................................................................................................211.000.00--1.00--------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTAGACAAT.........................................................................................281.000.001.00----------------------------------------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCTGGGGCTC.............321.000.00----1.00------------------------------------
.........................................................................................................................................................TAGAGACAGAGTCTTGCTCCGGC..........................................................................231.000.00----1.00------------------------------------
...........AGTATGTGCACTGAACTGAGTATCCCACTGGC...............................................................................................................................................................................................................3211.001.00---------------------1.00-------------------
...................................................................................................................................CACATTTATTTATTTATTATTG.................................................................................................221.000.00-1.00---------------------------------------
..................................................................................................................................................................................................TGGCGCGATCTTGGCTCACTGCTTTT..............................261.000.00-------------------------------------1.00---
.....................................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAAAAT............................251.000.00---------------------------1.00-------------
...................................................................................................................................CACATTTATTTATTTATTTATTTACG.............................................................................................261.000.001.00----------------------------------------
............................................................................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTCCTGGCGTC..............321.000.00-----1.00-----------------------------------
.....................................................................................................................................CATTTATTTATTTATTGTGG.................................................................................................201.000.00-1.00---------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTAGAATGA.........................................................................................281.000.001.00----------------------------------------
...................................................................................................................................CACATTTATTTATTTATCG....................................................................................................191.000.00---1.00-------------------------------------
...................................................................................................................................CACATTTATTTATTTATTTATTCTG..............................................................................................251.000.00--1.00--------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATTTAGCTTG..........................................................................................271.000.00-1.00---------------------------------------
...........................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGGGTC......................251.000.00-----1.00-----------------------------------
............................................................................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTCCTGGCTA...............311.000.00-----1.00-----------------------------------
...................................................................................................................................CACATTTATTTATTTATTTATTTAACAG...........................................................................................281.000.00--------1.00--------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCGGG............................................................................................261.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATCTTA..............................................................................................241.000.00---1.00-------------------------------------
....................................................................................................................................................TTATTTAGAGACAGAGACAG..................................................................................201.000.00-----------------------------1.00-----------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCTGGGGC...............301.000.00-----1.00-----------------------------------
..............................................................................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCGGCGC.............................................311.000.00----1.00------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATCTAG..............................................................................................231.000.00--1.00--------------------------------------
....................ACTGAACTGAGTATCCCACTGGCACGAAAG........................................................................................................................................................................................................3011.001.00------------------1.00----------------------
................................................................................................................................................................AGAGTCTTGCTCTGTCACCCAGGCTGGAGCGCG.........................................................331.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTCTCG................................................................................................221.000.00-1.00---------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTATTG.............................................................................................251.000.00---1.00-------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCCTG............................................................................................261.000.00--1.00--------------------------------------
.....................................................................................................................................................................................................CGCGATCTTGGCTCACTGCAAA...............................221.000.00-------------------------------1.00---------
.....................CTGAACTGAGTATCCCACTGGCA..............................................................................................................................................................................................................2311.001.00-----------------------------------1.00-----
................GTGCACTGAACTGAGTATCCCACTGGCACG............................................................................................................................................................................................................3011.001.00----------------------1.00------------------
...................................................................................................................................CACATTTATTTATTTATTTATTTACTTG...........................................................................................281.000.00-1.00---------------------------------------
...................................................................................................................................CACATTTATTTATTTATTTATTTACTG............................................................................................271.000.00--1.00--------------------------------------
......................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGAA...............................................211.000.00----------1.00------------------------------
...........................................................................................................................................TTTATTTATTTATTTAGAGACAGAGTCCCCT................................................................................311.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTCTT.............................................................................................251.000.00---1.00-------------------------------------
.....................................................................................................................................CATTTATTTATTTATTTATCAAG..............................................................................................231.000.001.00----------------------------------------
.......................................................................................................................................................................TGCTCTGTCACCCAGGCTGGAGTGCAGGGGA....................................................311.000.00----1.00------------------------------------
.........ATAGTATGTGCACTGAACTGA............................................................................................................................................................................................................................2111.001.00------------------------------------1.00----
.......................................................................................................................ATAACTGTTAGGCACCTGG................................................................................................................191.000.00--------1.00--------------------------------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCGGGT....................251.000.00-----1.00-----------------------------------
...................................................................................................................................CACATTTATTTATTTATTCTTG.................................................................................................221.000.00--1.00--------------------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCTAGGT...................301.000.00-----1.00-----------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTACT..............................................................................................241.000.00-1.00---------------------------------------
.........................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGCG....................291.000.00----1.00------------------------------------
....................................................................................................................................ACATTTATTTATTTATTCTCG.................................................................................................211.000.00---1.00-------------------------------------
....................................................................................................................................ACATTTATTTATTTATTTATTTACTCG...........................................................................................271.000.00---1.00-------------------------------------
...................................................................................................................................CACATTTATTTATTTATTTATTTAG..............................................................................................2540.250.25--0.25--------------------------------------
............GTATGTGCACTGAAC...............................................................................................................................................................................................................................1560.170.17----------------------------------------0.17

Antisense strand
AGAGTTTAAATAGTATGTGCACTGAACTGAGTATCCCACTGGCACGAAAGGTACTTTTAAACATTTTTCTGTTTAAGTATTTCATTGTGAATCAAATACAGAAAGTATCATGAAGTTATATAACTGTTAGGCACATTTATTTATTTATTTATTTAGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTG
.............................................................................................................................................................(((((((.....)))))))..(((((.....((((....))))...)))))..........................................
...............................................................................................................................128.............................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................................................................CTCCGCCTCCTGGGTTCAAGCAATTCG.... 272.000.00----2.00------------------------------------
..........................................................................................................................................................................................................................CCTCCGCCTCCTGGGTTCAAGCAATTCTCCTAAA 342.000.00-----------------2.00-----------------------
..........................................................................................................................................................................................................................CCTCCGCCTCCTGGGTTCAAGCAATTCTCCAA 322.000.00---------------2.00-------------------------
.......................................................................................................................................................................................................................CAACCTCCGCCTCCTGGAC................ 192.000.00--------------2.00--------------------------
...........................................................................................................................................................................................................................CTCCGCCTCCTGGGTTCAAGCAATTCTAA.. 292.000.00---------2.00-------------------------------
...........................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGCCG....................... 242.000.00----2.00------------------------------------
...........................................................................................................................................................................................................................CTCCGCCTCCTGGGTTCAAGCAATTCTCATTG 322.000.00------2.00----------------------------------
..........................................................................................................................................................................................................................CCTCCGCCTCCTGGGTTCAAGA.......... 221.000.00--------------------------------1.00--------
.................................................................................................................................................................................................GTGGCGCGATCTTGGCTCACG.................................... 211.000.00------1.00----------------------------------
...................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCTGGGTTCT............. 261.000.00---------------------------------1.00-------
...............................................................................................................................................................................CACCCAGGCTGGAGTGCAGTGGCGCGATGGC............................................ 311.000.00-----1.00-----------------------------------
..........................................................................................................................................ATTTATTTATTTATTTAGAGATGAG....................................................................................... 251.000.00-----------1.00-----------------------------
.......................................................................................................................................................................................................................CAACCTCCGCCTCCTGGGTTCAAGCAATACC.... 311.000.00-----1.00-----------------------------------
.....................................................................................................................................................................................................................................TGGGTTCAAGCAATTCTCCTTTC 231.000.00-----------------------1.00-----------------
............................................................................................................................................................................................................................TCCGCCTCCTGGGTTCAAGCAATTCTCCTTG 311.000.00----------1.00------------------------------
.............................................................................................................................................................................................................................CCGCCTCCTGGGTTCAAGCAATTCTCCTGGG 311.000.00------1.00----------------------------------
.........................................................................................................................................................................................................................ACCTCCGCCTCCTGGGTTCAAGCAAAA...... 271.000.00------------------------1.00----------------
...................................................................................................................................................................................................................................CCTGGGTTCAAGCAATTCTCCCGAT 251.000.00----------------------------------1.00------
..................................................................................................................................................................................CCAGGCTGGAGTGCAGTGGCGCGATCTTGTTA........................................ 321.000.00--------------------1.00--------------------
...................................................................................................................................................................................CAGGCTGGAGTGCAGTGGCGCGATCTTGAAA........................................ 311.000.00---------------------------------------1.00-
...........................................................................................................................................................................................................................CTCCGCCTCCTGGGTTCAAGCATAA...... 251.000.00-------------------------1.00---------------
............................................................................................................................................................................................................................TCCGCCTCCTGGGTTCAAGCAATTCTTGT. 291.000.00------1.00----------------------------------
.........................................................................................................................................................................................................................ACCTCCGCCTCCTGGGTTCAA............ 211.000.00------1.00----------------------------------
.............................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCCTGGGTCC.............. 311.000.00-----1.00-----------------------------------
..................................................................................................................................................................................................................CACTGCAACCTCCGCCTCCTGGGTTCC............. 271.000.00------1.00----------------------------------
..........................................................................................................................................................................................GAGTGCAGTGGCGCGATCTTGGCAT....................................... 251.000.00-------1.00---------------------------------
...................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCTGGGTTCTATT.......... 291.000.00----------------------------1.00------------
..........................................................................................................................................................................................................................CCTCCGCCTCCTGGGTTCAAGCAGCTG..... 271.000.00-----1.00-----------------------------------
...........................................................................................................................................TTTATTTATTTATTTAGAGACTAC....................................................................................... 241.000.00--1.00--------------------------------------
.........................................................................................................................................................................................................................ACCTCCGCCTCCTGGAGGG.............. 191.000.00------------------------------1.00----------