ID: uc010iar.2_intron_0_0_chr3_197687312_f.5p
GENE: (1)
chr3:197687262-197687511+


(2)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTTGGGCAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGACACTGAGGTAGGGCGACATGGGCGGGAGCGGGCCCTCTCAGGGTAAAGTCACCCAGAAGGAGCAGGCGTAGGAGATAGTGACTGGGAGAAGGTGTCCTGGATGAGAAAGCGAAATTGGGGCAGAGCCTGACTCTTACAGGCCTGGGACCCGCTCTCAGCTCCCTACACCCTGCAAGTTGGCTGTTAGGCGCTCAGAACAGTATCACT
...............................................................................................................................((((.((((..(((.(((...........))).)))....))))..)))).........................................................................
..................................................................................................................115...........................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)
.......................................................................................................................AGTGACTGGGAGAAGGTG.................................................................................................................18112.0012.002.005.00--2.00-1.00-------1.00----------1.00--------------------
........................................................................................................................................GTCCTGGATGAGAAAGCG................................................................................................18110.0010.00--10.00-------------------------------------------
.....................................................................................................................ATAGTGACTGGGAGAAGGTG.................................................................................................................2014.004.001.003.00--------------------------------------------
......................................................................................................................................................AGCGAAATTGGGGCAGAGCCTGA.............................................................................2313.003.003.00---------------------------------------------
...................................................................................................................AGATAGTGACTGGGAGAAGG...................................................................................................................2012.002.002.00---------------------------------------------
..................................................................................................GAAGGAGCAGGCGTAGGA......................................................................................................................................1812.002.002.00---------------------------------------------
.......................................................................................................AGCAGGCGTAGGAGATAGTGA..............................................................................................................................2112.002.00-2.00--------------------------------------------
..............................................................................................................................................GATGAGAAAGCGAAATTGG.........................................................................................1912.002.00-2.00--------------------------------------------
...................................................................................................................AGATAGTGACTGGGAGAAGGT..................................................................................................................2112.002.002.00---------------------------------------------
.....................................................................................................................ATAGTGACTGGGAGAAGG...................................................................................................................1831.331.33-1.00------------------------------------------0.33-
......................................................................................................GAGCAGGCGTAGGAGATAGTGACTGG..........................................................................................................................2611.001.00---1.00------------------------------------------
................................................................................................................AGGAGATAGTGACTGGGAGA......................................................................................................................2011.001.00-1.00--------------------------------------------
..........................................................................................................AGGCGTAGGAGATAGTGACTGG..........................................................................................................................2211.001.00---1.00------------------------------------------
..........................................................................................................AGGCGTAGGAGATAGTG...............................................................................................................................1711.001.00-------------------------------------1.00--------
............................................ACTGAGGTAGGGCGACAT............................................................................................................................................................................................1811.001.00-------------------1.00--------------------------
..................................................................................................................GAGATAGTGACTGGGAGAAGGTG.................................................................................................................2311.001.00------1.00---------------------------------------
...................................................................................................................................AAGGTGTCCTGGATGAGAAAG..................................................................................................2111.001.00--------------------------------------1.00-------
....................................................................................................................GATAGTGACTGGGAGAAGGT..................................................................................................................2011.001.001.00---------------------------------------------
.........................................................................................................................................TCCTGGATGAGAAAGCGA...............................................................................................1811.001.00---1.00------------------------------------------
............................................................ATGGGCGGGAGCGGGC..............................................................................................................................................................................1611.001.00----------------------1.00-----------------------
.....................................................................................................................................................................................................................TGCAAGTTGGCTGTTAGGT..................191.000.00--------------------------1.00-------------------
....................................................................................................................................................................................................................CTGCAAGTTGGCTGTTAGGC..................2011.001.00---------------1.00------------------------------
.........................................................................................................CAGGCGTAGGAGATAGTG...............................................................................................................................1811.001.00----------1.00-----------------------------------
..............................................................................................................GTAGGAGATAGTGACTGG..........................................................................................................................1811.001.00----------------------------1.00-----------------
.......................................................................................................AGCAGGCGTAGGAGATAG.................................................................................................................................1811.001.00------------------------------------1.00---------
....................................................................................................................................................................................................................................AGGCGCTCAGAACAGTAT....1811.001.001.00---------------------------------------------
.......................CGGCACCACGTCCCCTCTG................................................................................................................................................................................................................1911.001.00-------------1.00--------------------------------
.....................GCCGGCACCACGTCCCCTCTGAA..............................................................................................................................................................................................................231.000.00-----------1.00----------------------------------
................................................................................................................AGGAGATAGTGACTGGGAG.......................................................................................................................1911.001.00-------1.00--------------------------------------
.............................................................................................ACCCAGAAGGAGCAGGCGTAGGAGAAAG.................................................................................................................................281.000.00-1.00--------------------------------------------
........................................................................................................................................GTCCTGGATGAGAAAGCGAAATTGG.........................................................................................2511.001.00-1.00--------------------------------------------
.......................................................................................................AGCAGGCGTAGGAGATAGAA...............................................................................................................................2011.001.00----------------1.00-----------------------------
...................................................................................................................AGATAGTGACTGGGAGAAGGTG.................................................................................................................2211.001.00---1.00------------------------------------------
..................................................................................................................GAGATAGTGACTGGGAGAAGGT..................................................................................................................2211.001.00---------------------------------------1.00------
.......................................................................................................................................TGTCCTGGATGAGAAAGAG................................................................................................191.000.00---------------------------1.00------------------
.....................................................................................GTAAAGTCACCCAGAAGGAG.................................................................................................................................................2011.001.00-1.00--------------------------------------------
.....................................................................................................................ATAGTGACTGGGAGAAGGT..................................................................................................................1911.001.00---1.00------------------------------------------
..................................................................................................................................................................................ACAGGCCTGGGACCCGCTCTCAGCTCCCC...........................................291.000.00---------1.00------------------------------------
......................................................................................................................TAGTGACTGGGAGAAGGTGTTT..............................................................................................................221.000.00-----------------------------------------1.00----
................................................................................................................AGGAGATAGTGACTGGGAGAAGGTG.................................................................................................................2511.001.00-1.00--------------------------------------------
.......................................................................................................AGCAGGCGTAGGAGATAGTGACT............................................................................................................................2311.001.00--------------------------------1.00-------------
........................................................................................................................................................CGAAATTGGGGCAGA...................................................................................1511.001.00------------1.00---------------------------------
......................................................................................................GAGCAGGCGTAGGAGATA..................................................................................................................................1811.001.00----------------------------------1.00-----------
..............................................................................................................GTAGGAGATAGTGACTGGG.........................................................................................................................1911.001.00--------------------1.00-------------------------
...................................................................................................................................AAGGTGTCCTGGATGAGAAAGCGAAA.............................................................................................2611.001.00-----1.00----------------------------------------
......................................................................................................................TAGTGACTGGGAGAAGTATA................................................................................................................201.000.00---------------------------------1.00------------
..............................................................................................................GTAGGAGATAGTGACTGGGAGAAG....................................................................................................................2411.001.00-----1.00----------------------------------------
.........................................................................................................CAGGCGTAGGAGATAGTGA..............................................................................................................................1911.001.00-----------------------1.00----------------------
.................................................................................................................GGAGATAGTGACTGGGAAA......................................................................................................................191.000.00------------------------1.00---------------------
................................................................................................................AGGAGATAGTGACTGGGA........................................................................................................................1820.500.50------------------------------------------0.50---
.........GTTCCCCTCCCTGCCGG................................................................................................................................................................................................................................1720.500.50-------------------------------------------0.50--
.....................................................................................................................ATAGTGACTGGGAGAAG....................................................................................................................1740.250.25---------------------------------------------0.25
.....................................................................................................................................................................GAGCCTGACTCTTAC......................................................................1560.170.17------------0.17---------------------------------

Antisense strand
CCTTGGGCAGTTCCCCTCCCTGCCGGCACCACGTCCCCTCTGACACTGAGGTAGGGCGACATGGGCGGGAGCGGGCCCTCTCAGGGTAAAGTCACCCAGAAGGAGCAGGCGTAGGAGATAGTGACTGGGAGAAGGTGTCCTGGATGAGAAAGCGAAATTGGGGCAGAGCCTGACTCTTACAGGCCTGGGACCCGCTCTCAGCTCCCTACACCCTGCAAGTTGGCTGTTAGGCGCTCAGAACAGTATCACT
...............................................................................................................................((((.((((..(((.(((...........))).)))....))))..)))).........................................................................
..................................................................................................................115...........................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)
.................................................................................................................................................................................................................................ATACTGTTCTGAGCGCCTAAC.... 2112.002.001.00---------------------------------------1.00-----
......................................................................................................................................................................................................CTTGCAGGGTGTAGGGAGCTG............................... 2112.002.002.00---------------------------------------------
...........................................................................................................................................................................................TAGGGAGCTGAGAGCGGGTCC.......................................... 2112.002.00--------2.00-------------------------------------
.................................................................................................................................................................................................................................ACTGTTCTGAGCGCCTAAC...... 1911.001.00-----------1.00----------------------------------
.............................................................................................................................................................................................ACCCGCTCTCAGCTCCCTACAT....................................... 221.000.00------------------1.00---------------------------
.........................................................................................................................................................................................................ACTTGCAGGGTGTAGGGAG.............................. 1911.001.00----------1.00-----------------------------------
...........................................................................................................................................................................................................................................CAGAACAGTATCACTCC 171.000.00-----------------1.00----------------------------
......................................................................................................................................................................................................TTGCAGGGTGTAGGGAGCTG................................ 2011.001.00-----------------------------------1.00----------
...................................................................................................................................................................................................................................TACTGTTCTGAGCGCCTA..... 1811.001.00------------------------------1.00---------------
.................................................................................................................................................................................AGCGGGTCCCAGGCCTGTA...................................................... 1911.001.00---------------------1.00------------------------
.........................................................................................................................................................................................................CTTGCAGGGTGTAGGGAG............................... 1811.001.00-------------------------------1.00--------------
.........................GCACCACGTCCCCTCTACA.............................................................................................................................................................................................................. 191.000.00---------1.00------------------------------------
.......................................................................................................................................................................................................AGCTCCCTACACCCTAAT................................. 181.000.00-----------------------------1.00----------------
....................................................................................................................................................................................................................................GTGATACTGTTCTGAGCGCCT. 2111.001.00-------1.00--------------------------------------
...............................................................................................................................................................................................GGTGTAGGGAGCTGAGAGCGG...................................... 2111.001.001.00---------------------------------------------