ID: uc010hzy.2_intron_15_0_chr3_195800997_r.3p
GENE: (2)
chr3:195800947-195801196-


(1)
AGO2.ip 		(5)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(4)
HEART 		(5)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TAGCTATTTGAAATAAAGCTAGTATATAATTTATTAAGTGGTTTAAAGTATACAAAACTGAGATGCATTATATACTTTAAAACTACTTAGAATTTGATGAAAACCAGTATTTTCAAGGCTTACCTGAAAATATTAACAGATTAACAGGGATAGATTACAAATGAAATTCTGAGTTCAGCTCTGGAACTTTGTCTCTTTAGGATTTATGATTGGCTACTTGGGCTATTGTAAAGGGGTAGAACCAAAAACT
.................................................................(((((.....(((((......)))))...)))))......(((((((((.(((....))))))))))))....................................................................................................................
................................................................65.....................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................TTAACAGATTAACAGGGATAGATTACAAATGAAATTCTGAGTTCAGCTCTGGAACTTTGTCTCTTTAG..................................................68113.0013.001.0012.00----------------------------------------------------
.....................................................................................................................................TAACAGATTAACAGGGATAGATTACAAATGAAATTCTGAGTTCAGCTCTGGAACTTTGTCTCTTTAG..................................................67112.0012.0012.00-----------------------------------------------------
.......................................................................................................................................ACAGATTAACAGGGATAGATTACAAATGAAATTCTGAGTTCAGCTCTGGAACTTTGTCTCTTTAG..................................................6515.005.005.00-----------------------------------------------------
.....................................................................ATATACTTTAAAACTACTTAGA...............................................................................................................................................................2214.004.00------3.00---------------------------------1.00-------------
..............................................................................................................................................................................................................................CTATTGTAAAGGGGTAGAA.........1924.004.00--------4.00---------------------------------------------
..........................................................................................................................................................................................................TTTATGATTGGCTACTTG..............................1812.002.00----------------2.00-------------------------------------
.................................................................................................................................................................................................................................TTGTAAAGGGGTAGAACC.......1812.002.00--2.00---------------------------------------------------
.............................................................................................................................................................................TTCAGCTCTGGAACTTTGTCTCTTTAG..................................................2712.002.00---2.00--------------------------------------------------
.....................................................................ATATACTTTAAAACTACTTAG................................................................................................................................................................2112.002.00----2.00-------------------------------------------------
.........................................................................................................................................................................................................ATTTATGATTGGCTACTTGGG............................2112.002.00---------2.00--------------------------------------------
..............................................................................................................................................................................................................................CTATTGTAAAGGGGTAGA..........1822.002.00-------------2.00----------------------------------------
....................................................................................................................................................................................................................GCTACTTGGGCTATTGTAAAGGGG..............2412.002.00--2.00---------------------------------------------------
..............................................................................................................................................AACAGGGATAGATTACAAATGA......................................................................................2212.002.00--2.00---------------------------------------------------
.................................................................CATTATATACTTTAAAACTACTTAG................................................................................................................................................................2512.002.00-----2.00------------------------------------------------
............................................................................................................................................................................................................................GGCTATTGTAAAGGGGTAGAACC.......2312.002.00-------1.00--------------------------1.00-------------------
...................................................................................................................AGGCTTACCTGAAAATATTAACA................................................................................................................2312.002.00-----------------2.00------------------------------------
...................................................................................................................................................................................................................................GTAAAGGGGTAGAACCAAAAAAA232.000.00-----------2.00------------------------------------------
......................................................................................................................................AACAGATTAACAGGGATAGATTAC............................................................................................2412.002.00-------2.00----------------------------------------------
.................................................................................................................................................................................................................................TTGTAAAGGGGTAGAAC........1731.331.33----------------------------1.00------------------0.33------
.........................................................................................................................................................................................................................TTGGGCTATTGTAAAGGGGTA............2111.001.00------------1.00-----------------------------------------
..............................................................................................................................................................................TCAGCTCTGGAACTTTGTCTCTTT....................................................2411.001.00--------------------------------------1.00---------------
....................................................................................................................................................................................................................GCTACTTGGGCTATTGTAAAG.................2111.001.00---------------------1.00--------------------------------
..................................................................................................................................................................................CTCTGGAACTTTGTCTCTTTAG..................................................2211.001.00-------------------1.00----------------------------------
................................................................................................................................................................................................................ATTGGCTACTTGGGCTATT.......................1911.001.00-----------1.00------------------------------------------
................................................................................................................................................................ATGAAATTCTGAGTTCAGCTCT....................................................................2211.001.00--------------------------1.00---------------------------
.......................................................................................................................................................................................................................ACTTGGGCTATTGTAAAGG................1911.001.00-----------------------1.00------------------------------
...............................................................................................................................................................................CAGCTCTGGAACTTTGTCT........................................................1911.001.00-----------------------------------------1.00------------
................................................................................................................................................................................................................................ATTGTAAAGGGGTAGAACCA......2011.001.00-------1.00----------------------------------------------
..........................................................................................................................................................................................................TTTATGATTGGCTACTTGGGC...........................2111.001.00------------------------------------1.00-----------------
.................................................................CATTATATACTTTAAAACTACTCAG................................................................................................................................................................251.000.00-----1.00------------------------------------------------
......................................................................................................................................................................................................................................AAGGGGTAGAACCAAAAA..1811.001.00-----------------------------------1.00------------------
...............................TATTAAGTGGTTTAAAGTATACAA...................................................................................................................................................................................................2411.001.00----1.00-------------------------------------------------
.....................................................................................................................................................................................................................................AAAGGGGTAGAACCAAAAAC.2011.001.00---------------1.00--------------------------------------
.........................................................................................................................................................................TGAGTTCAGCTCTGGAAC...............................................................1811.001.00-------------------------------1.00----------------------
...........................................................................................................................................................................................................................GGGCTATTGTAAAGGGGTAGAACC.......2411.001.00------------1.00-----------------------------------------
.....................................................................ATATACTTTAAAACTACTTAT................................................................................................................................................................211.000.00----1.00-------------------------------------------------
...................................................................................................................................................................................................................GGCTACTTGGGCTATTGTAAAGGGGTA............2711.001.00----------1.00-------------------------------------------
......................................................................................................................................................................................................................TACTTGGGCTATTGTAAAGGGGTAGA..........2611.001.00---------------------------------1.00--------------------
..............................................................................................................................................................................TCAGCTCTGGAACTTTGTCTCTTTAG..................................................2611.001.00---1.00--------------------------------------------------
........................................................................................................................................................................................................................CTTGGGCTATTGTAAAGGGGTAGAAC........2611.001.00----------1.00-------------------------------------------
.........................................................................................................................................................................................................................TTGGGCTATTGTAAAGGGGGA............211.000.00----------------------1.00-------------------------------
.............................................................................................................................................................................................................ATGATTGGCTACTTGGGC...........................1811.001.00--1.00---------------------------------------------------
.................................................................................................................................................AGGGATAGATTACAAATGAAATTCTGAGTTCAGC.......................................................................3411.001.00--------------1.00---------------------------------------
......................................................................................................................................AACAGATTAACAGGGATAG.................................................................................................1911.001.00---------------------------------------1.00--------------
......................................................................TATACTTTAAAACTACTTAGAAT.............................................................................................................................................................2311.001.00--1.00---------------------------------------------------
.......................................................................................................................................................................................................................................AGGGGTAGAACCAAAAAC.1811.001.00---------------------------1.00--------------------------
................................................................................................................................................................................................................................ATTGTAAAGGGGTAGAACC.......1911.001.00--1.00---------------------------------------------------
.........................................................................................................................................................................................................ATTTATGATTGGCTACTTGG.............................2011.001.00------------------1.00-----------------------------------
..........................................................................................................................................................................................................................TGGGCTATTGTAAAGGGGTAGAAA........241.000.00-------------------------1.00----------------------------
..............................................................................................................................................................................................................................CTATTGTAAAGGGGTAGAACACTG....241.000.00-------------------------------------1.00----------------
...............................................................................................................................................................................................................................TATTGTAAAGGGGTAGAAC........1921.001.00--0.50------------------------------------------0.50--------
...............................................................................................................................................................................................................................TATTGTAAAGGGGTATGA.........181.000.00------------------------------1.00-----------------------
.......................................................................................................................................................................................................................ACTTGGGCTATTGTAAAG.................1811.001.00------------------1.00-----------------------------------
...............................................................................AAACTACTTAGAATTTGAT........................................................................................................................................................1911.001.00---------1.00--------------------------------------------
.....................................................................................................................................................................................................................CTACTTGGGCTATTGTAAAG.................2011.001.00-------------------------------------------1.00----------
............................................................................................................................................................................................................................GGCTATTGTAAAGGGGTAGAA.........2111.001.00------------------------------------------1.00-----------
..................................................................................................................................................................................................................................TGTAAAGGGGTAGAACC.......1711.001.00--------------------------------------------1.00---------
........................................................................................................................................CAGATTAACAGGGATAGATTACAAATGA......................................................................................2811.001.00---------------1.00--------------------------------------
.....................................................................................................................................................................................................................CTACTTGGGCTATTGTAAAGGGATA............251.000.00----------1.00-------------------------------------------
..................................................................ATTATATACTTTAAAACTACCTAG................................................................................................................................................................241.000.00-----1.00------------------------------------------------
.................................................................................................................................ATATTAACAGATTAACAGGGATAGA................................................................................................2511.001.00--1.00---------------------------------------------------
........................................................................................................................................................................................................................CTTGGGCTATTGTAAAGGGGTAGAACCA......2811.001.00--------------1.00---------------------------------------
.........................................................................................................................................................................................................ATTTATGATTGGCTACTTG..............................1911.001.00--------------------------------1.00---------------------
............................................................................................................................................................................................................................GGCTATTGTAAAGGGGTAGAAC........2211.001.00---1.00--------------------------------------------------
.....................................................................ATATACTTTAAAACTACTTATA...............................................................................................................................................................221.000.00------1.00-----------------------------------------------
....................................................................................ACTTAGAATTTGATGAAAACC.................................................................................................................................................2111.001.00------------------------1.00-----------------------------
......................................................................................................................................................................TTCTGAGTTCAGCTCTGGAACTTT............................................................2411.001.00-----------------------------1.00------------------------
....................................................................................................................................................................................................................................TAAAGGGGTAGAACC.......1530.330.33----------------------------------------------0.33-------
.................................................................................................................................................................................................................................TTGTAAAGGGGTAGAACTTTG....2130.331.33------------------------------------------------0.33-----
...................................................................................................................................................................................................................................GTAAAGGGGTAGAACACTG....1980.120.12-----------------------------------------------------0.12
...................................................................................................................................................................................................................................GTAAAGGGGTAGAAC........1580.120.12-------------------------------------------------0.12----

Antisense strand
TAGCTATTTGAAATAAAGCTAGTATATAATTTATTAAGTGGTTTAAAGTATACAAAACTGAGATGCATTATATACTTTAAAACTACTTAGAATTTGATGAAAACCAGTATTTTCAAGGCTTACCTGAAAATATTAACAGATTAACAGGGATAGATTACAAATGAAATTCTGAGTTCAGCTCTGGAACTTTGTCTCTTTAGGATTTATGATTGGCTACTTGGGCTATTGTAAAGGGGTAGAACCAAAAACT
.................................................................(((((.....(((((......)))))...)))))......(((((((((.(((....))))))))))))....................................................................................................................
................................................................65.....................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
....................................................................................ACTTAGAATTTGATGAACATT................................................................................................................................................. 211.000.00--------------------1.00---------------------------------
......................................................................................................................................CCCTGTTAATCTGTT..................................................................................................... 1580.500.50-------------------------------------------------0.120.120.120.12-