ID: uc010hzo.2_intron_3_0_chr3_195456611_f.3p
GENE: (4)
chr3:195459821-195460070+


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(11)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
KIDNEY
(8)
LIVER
(2)
OTHER
(1)
RRP40.ip
(11)
SKIN

Sense strand
CACCTGCTTTATAAGGTTGCTGTGAGGTTTAGATGACATAATGTGTGTGAGGCACCAGCCTGTGTCCAGCATGTAGGAGGCCCAGGAAGGGTTGCCGTCCTCCGCATGCACTCTGCCCCAGTGTCCCTTCCTGTCCTCTGCCTCTGGCGAGCTCATGGGCCAGATGGGCTGAAAGGACAGCTGGCTCTTTTGCTCTCCAGCTCCACCGGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACT
...............................................................................................................................................((((.((((....(((((((.((..((....)).)).)))))))....)))).))))..................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................................TGGCGAGCTCATGGGCCAGATG....................................................................................22111.0011.00----2.001.001.00--1.00-------1.00--1.001.001.00---1.001.00----------------------
...............................................................................................................................................CTGGCGAGCTCATGGGCCAGAT.....................................................................................2219.009.00--3.00---1.00----1.00-----------------1.00-1.00---1.00-1.00------------
................................................................................................................................................TGGCGAGCTCATGGGCCAGATGT...................................................................................2314.0011.00-------------2.00--------------------1.00---1.00-----------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCAGA.................................................2212.001.00---1.00---------------------1.00------------------------
................................................................................................................................................TGGCGAGCTCATGGGCCAG.......................................................................................1912.002.00-------1.00-----------------------------------1.00------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCATT.................................................222.000.002.00-------------------------------------------------
................................................................................................................................................TGGCGAGCTCATGGGCCAGAT.....................................................................................2112.002.00------------------------------1.00-------------1.00-----
...............................................................................................................................................CTGGCGAGCTCATGGGCCAGATAA...................................................................................2412.009.001.00-----------------------1.00-------------------------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCAGTT................................................2312.001.00-1.00----------1.00-------------------------------------
..............................................................................................................................................TCTGGCGAGCTCATGGGCCAAA......................................................................................222.000.00--------2.00-----------------------------------------
................................................................................................................................................TGGCGAGCTCATGGGCCAGA......................................................................................2012.002.001.00--1.00----------------------------------------------
.......................................................................................AGGGTTGCCGTCCTCCGCTT...............................................................................................................................................201.000.00-----------------------1.00--------------------------
...............................................................................................................................................CTGGCGAGCTCATGGGCC.........................................................................................1811.001.00-------------------1.00------------------------------
......................................................................ATGTAGGAGGCCCAGAGG..................................................................................................................................................................181.000.00---------------------------------------1.00----------
.....................................................................................................................................................................................TGGCTCTTTTGCTCTCCAGCGA...............................................221.000.00---------1.00----------------------------------------
.......................................................................................................................................................................GCTGAAAGGACAGCTGGCTCTTTTG..........................................................2511.001.00---------------------------------1.00----------------
...............................................................................................................................................CTGGCGAGCTCATGGGCCAGAA.....................................................................................221.000.00-1.00------------------------------------------------
...............................................TGAGGCACCAGCCTGTAT.........................................................................................................................................................................................181.000.00----------------------------1.00---------------------
...................................................................................................................................................................................GCTGGCTCTTTTGCTTAT.....................................................181.000.00------------------------------------------1.00-------
................................................................................................................................................TGGCGAGCTCATGGGCCAGATGTAA.................................................................................2511.0011.00---------------1.00----------------------------------
.....................................................................................................................................................................................TGGCTCTTTTGCTCTCCAGAGA...............................................221.000.00-1.00------------------------------------------------
.....................................................................................................................................................................................TGGCTCTTTTGCTCTCCAGA.................................................201.000.00-------1.00------------------------------------------
...............................................................................................................................................CTGGCGAGCTCATGGGCCAGATGGT..................................................................................251.000.00------------1.00-------------------------------------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCAG..................................................2111.001.00---1.00----------------------------------------------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCAGT.................................................2211.001.00----------1.00---------------------------------------
.............................................................................................................................................CTCTGGCGAGCTCATGGGCCAAAT.....................................................................................241.000.00------------------1.00-------------------------------
..............................................................................................................................................TCTGGCGAGCTCATGGGCCAGA......................................................................................2211.001.00----------------------------------------1.00---------
...............................................TGAGGCACCAGCCTGTGTG........................................................................................................................................................................................191.000.00--------------1.00-----------------------------------
....................................................................................................................................................................................CTGGCTCTTTTGCTCTCCAGTTT...............................................231.000.00-----------1.00--------------------------------------
......................................................................................AAGGGTTGCCGTCCTCCGCATGCACT..........................................................................................................................................2611.001.00-----------------------------------------1.00--------
..............................................................................................................................................TCTGGCGAGCTCATGGG...........................................................................................1711.001.00--------------------------------1.00-----------------
...................................................................................................................................................................................GCTGGCTCTTTTGCTCTCCAGTA................................................2311.001.00-----1.00--------------------------------------------
.....................................................................................................................................................................................TGGCTCTTTTGCTCTCCAGCTT...............................................221.000.00------------------------------------1.00-------------
................................................................................................................................................TGGCGAGCTCATGGGCCAGATGTT..................................................................................2411.0011.00----------1.00---------------------------------------
..............................................................TGTCCAGCATGTAGG.............................................................................................................................................................................1560.330.33---------------------------------------------0.33----

Antisense strand
CACCTGCTTTATAAGGTTGCTGTGAGGTTTAGATGACATAATGTGTGTGAGGCACCAGCCTGTGTCCAGCATGTAGGAGGCCCAGGAAGGGTTGCCGTCCTCCGCATGCACTCTGCCCCAGTGTCCCTTCCTGTCCTCTGCCTCTGGCGAGCTCATGGGCCAGATGGGCTGAAAGGACAGCTGGCTCTTTTGCTCTCCAGCTCCACCGGGAACTCCACGCCCACGCGCCTCACTTCCAGGTCTCCTTACT
...............................................................................................................................................((((.((((....(((((((.((..((....)).)).)))))))....)))).))))..................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................................................................................CCAGCTCCACCGGGATT..................................... 171.000.00----------------1.00---------------------------------
..............................................................................................................................AGGCAGAGGACAGGAAG........................................................................................................... 1770.430.43-----------------------------------------------0.290.14-
.............................................................................................................................AGGCAGAGGACAGGAAGG........................................................................................................... 1830.330.33----------------------------------------------0.33---
............................................................................................................................................................................................TGGAGCTGGAGAGCAAA............................................. 1770.140.14-------------------------------------------------0.14