ID: uc010hwc.1_intron_9_0_chr3_160137332_f.5p
GENE: SMC4(10)
chr3:160137282-160137531+


(3)
B-CELL 		(1)
BREAST 		(13)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(1)
OTHER 		(1)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TAATTCAAGAAAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGGTAAAGTAGATTTTTGGGGGGCATGGCTTTACTTTTTTTTTTTAAGAAAGTGTAACTTATTTTTTTGCCTTGACAACCATATTTCAAGTGTCACTGTATATAAAATAAGATTCATTTTGTTTGTTTTAAGGCACATTTATTTTTAAACATTTTGCCCTTACAGTTTCTTGTTTACTTAGCTTTAGATAAATACAATTATT
.......................................................................((.(((..(((((((((.....)))))))))..............))).))................................................................................................................................
.......................................................................72.............................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................CTTTACTTTTTTTTTTTAAAAG........................................................................................................................................................2230.000.00-10.00-11.004.004.00------1.00------------
..................................AATATATGGAAGATTGGGGG....................................................................................................................................................................................................206.000.00------1.00-5.00----------------
.................................GAATATATGGAAGATTGGTAAAGTAGA..............................................................................................................................................................................................2714.004.00----------4.00--------------
............................................................................CTTTACTTTTTTTTTTTAAAAAG.......................................................................................................................................................234.000.00-2.00--2.00--------------------
...............................AGGAATATATGGAAGATTG........................................................................................................................................................................................................1913.003.00-------1.00-------1.00------1.00--
..................................AATATATGGAAGATTGGGGGA...................................................................................................................................................................................................213.000.00------2.00--------------1.00---
............................................................................CTTTACTTTTTTTTTTAATG..........................................................................................................................................................202.000.00-1.00---1.00-------------------
......................................................AGTAGATTTTTGGGGGGCATGGCCT...........................................................................................................................................................................2512.001.00--2.00----------------------
...........................................................ATTTTTGGGGGGCATGGCTTTACTTTTTTTTC...............................................................................................................................................................322.000.002.00------------------------
............................................................................CTTTACTTTTTTTTTTTAAG..........................................................................................................................................................2061.501.50-0.50-0.33-0.67-------------------
.............................................................................................................................................................................TTTTAAGGCACATTTATTTTTAAACATTTTG..............................................3111.001.00-----1.00-------------------
..............................................................................TTACTTTTTTTTTTTAAGCTGG......................................................................................................................................................221.000.001.00------------------------
.............................................................................TTTACTTTTTTTTTTTATAAT........................................................................................................................................................211.000.00-1.00-----------------------
..............................................................TTTGGGGGGCATGGCTTTACTTTTTTTTTTT.............................................................................................................................................................3111.001.001.00------------------------
................................................................TGGGGGGCATGGCTTTACTTTTTTTTTCT.............................................................................................................................................................291.000.001.00------------------------
.......................................ATGGAAGATTGGTAAAGTAGATT............................................................................................................................................................................................2311.001.00-------1.00-----------------
.............................................................................TTTACTTTTTTTTTTTATTC.........................................................................................................................................................201.000.001.00------------------------
...................................ATATATGGAAGATTGGTAAAGTAGAT.............................................................................................................................................................................................2611.001.00------1.00------------------
...............................................................TTGGGGGGCATGGCTTTACTTTTTTTTTCT.............................................................................................................................................................301.000.001.00------------------------
.............................................................TTTTGGGGGGCATGGCTTTACTTTTTTCTTT..............................................................................................................................................................311.000.001.00------------------------
............................................................................CTTTACTTTTTTTTTTTAAAAT........................................................................................................................................................221.000.00-----1.00-------------------
..................................................GTAAAGTAGATTTTTGGGGGGCATGGCTTTAC........................................................................................................................................................................3211.001.00-----------------1.00-------
.......................................................................CATGGCTTTACTTTTTTTTTTAAG...........................................................................................................................................................241.000.001.00------------------------
..................................................GTAAAGTAGATTTTTGGGGGGC..................................................................................................................................................................................2211.001.00------1.00------------------
...............................................................TTGGGGGGCATGGCTTTACTTTTTTTTC...............................................................................................................................................................281.000.00--1.00----------------------
............................................................................CTTTACTTTTTTTTTTTCTGG.........................................................................................................................................................211.000.00-1.00-----------------------
..................................................GTAAAGTAGATTTTTGGA......................................................................................................................................................................................181.000.00------1.00------------------
...................................................................GGGGCATGGCTTTACTTTTTTTTTTTC............................................................................................................................................................271.000.001.00------------------------
.................................................................................................................TTTGCCTTGACAACCATG.......................................................................................................................181.000.00---------1.00---------------
.............................................................................TTTACTTTTTTTTTTTATCAG........................................................................................................................................................211.000.00------------1.00------------
..............................CAGGAATATATGGAAGATT.........................................................................................................................................................................................................1911.001.00-------1.00-----------------
..............................................................TTTGGGGGGCATGGCTTTACTTTTTTTTTC..............................................................................................................................................................301.000.00--1.00----------------------
...........................................................ATTTTTGGGGGGCATGGCTTTACTTTCT...................................................................................................................................................................281.000.00--1.00----------------------
.......AGAAAAAAAATCTGGCAGGATTCC...........................................................................................................................................................................................................................2411.001.00-------------------1.00-----
.....................................................AAGTAGATTTTTGGGGGGCATGGCTC...........................................................................................................................................................................261.000.001.00------------------------
......................................................................................................................................................................................ACATTTATTTTTAAACAACG................................................201.000.00-1.00-----------------------
............................................................................CTTTACTTTTTTTTTTGGG...........................................................................................................................................................191.000.00-----1.00-------------------
..........AAAAAAATCTGGCAGGATTCCAG.........................................................................................................................................................................................................................2311.001.00---------1.00---------------
............................................................................CTTTACTTTTTTTTTTTAATTTG.......................................................................................................................................................231.000.00-----1.00-------------------
...........................TTCCAGGAATATATGGAAGATTGGGG.....................................................................................................................................................................................................261.000.00--------------------1.00----
...........................................................ATTTTTGGGGGGCATGGCTTTACTTTTTTT.................................................................................................................................................................3011.001.00--1.00----------------------
.............AAAATCTGGCAGGATTCCAGG........................................................................................................................................................................................................................2111.001.00-------------1.00-----------
..............................CAGGAATATATGGAAGGTT.........................................................................................................................................................................................................191.000.00-------1.00-----------------
................................................................TGGGGGGCATGGCTTTACTTTTTTTTTTCT............................................................................................................................................................301.000.00--1.00----------------------
............................................................................CTTTACTTTTTTTTTTTAAAAA........................................................................................................................................................221.000.00----1.00--------------------
.............AAAATCTGGCAGGATTCCAGGAA......................................................................................................................................................................................................................2311.001.001.00------------------------
......................CAGGATTCCAGGAATATATGGAAGATTG........................................................................................................................................................................................................2811.001.00-----------1.00-------------
......................................................AGTAGATTTTTGGGGGGCATGGC.............................................................................................................................................................................2311.001.00--1.00----------------------
.........................................................................TGGCTTTACTTTTTTTTTTTTCTC.........................................................................................................................................................241.000.001.00------------------------
.........AAAAAAAATCTGGCAGGATTCCAG.........................................................................................................................................................................................................................2411.001.00---------1.00---------------
.............................................................................TTTACTTTTTTTTTTTATAAG........................................................................................................................................................211.000.00-----1.00-------------------
..........................................................................................................................................TGTCACTGTATATAAAATAAGATTCATT....................................................................................2811.001.00----1.00--------------------
.................TCTGGCAGGATTCCAGGAATATATGGAAG............................................................................................................................................................................................................2911.001.00--1.00----------------------
............................................................................CTTTACTTTTTTTTTTTACACG........................................................................................................................................................221.000.00---1.00---------------------
............................................................................CTTTACTTTTTTTTTTTAGAAG........................................................................................................................................................221.000.00---1.00---------------------
...............................................................................................................................................................ATTCATTTTGTTTGTTTTTTT......................................................................211.000.00----1.00--------------------
.............................................................TTTTGGGGGGCATGGCTTTACTTTTT...................................................................................................................................................................2611.001.00--1.00----------------------
.........AAAAAAAATCTGGCAGGATTCCAGGAA......................................................................................................................................................................................................................2711.001.00---------1.00---------------
..........................................................................................................................................TGTCACTGTATATAAAATAAGATTCACT....................................................................................281.000.00----1.00--------------------
.................................GAATATATGGAAGATTGGG......................................................................................................................................................................................................191.000.00-------1.00-----------------
..................................................GTAAAGTAGATTTTTGGGGGGCATGG..............................................................................................................................................................................2611.001.00----------------1.00--------
....................................................................GGGCATGGCTTTACTTTTTTTTTTTCAAG.........................................................................................................................................................291.000.00----1.00--------------------
..................................................................GGGGGCATGGCTTTACTTTTTTTTTA..............................................................................................................................................................261.000.00--1.00----------------------
.........................................................................TGGCTTTACTTTTTTTTTTTTTCT.........................................................................................................................................................241.000.00--1.00----------------------
.........................................................................TGGCTTTACTTTTTTTTCTTT............................................................................................................................................................211.000.001.00------------------------
............................................AGATTGGTAAAGTAGATTTTTGGGGG....................................................................................................................................................................................2611.001.00------1.00------------------
...........AAAAAATCTGGCAGGTGCA............................................................................................................................................................................................................................191.000.00---------1.00---------------
....................................TATATGGAAGATTGGAGC....................................................................................................................................................................................................181.000.00----1.00--------------------
.........................................................................TGGCTTTACTTTTTTTCG...............................................................................................................................................................181.000.00--1.00----------------------
................................................................TGGGGGGCATGGCTTTACTTTTTTTCTTT.............................................................................................................................................................291.000.001.00------------------------
......................................................AGTAGATTTTTGGGGGGCATGGCTTTCTC.......................................................................................................................................................................291.000.00--1.00----------------------
.....................................................AAGTAGATTTTTGGGGGGCATGGCTTC..........................................................................................................................................................................271.000.001.00------------------------
..........................................................................................................................................TGTCACTGTATATAAAATAAGATTCATCTTG.................................................................................311.000.00----1.00--------------------
................................GGAATATATGGAAGATTGGTAAAGTA................................................................................................................................................................................................2611.001.00----------1.00--------------
.................................GAATATATGGAAGATTG........................................................................................................................................................................................................1711.001.00-----------1.00-------------
................................................................TGGGGGGCATGGCTTTACTTTTTTTTTA..............................................................................................................................................................281.000.001.00------------------------
...............................AGGAATATATGGAAGATT.........................................................................................................................................................................................................1820.500.50-------0.50-----------------
............AAAAATCTGGCAGGAT..............................................................................................................................................................................................................................1650.200.20-----------------------0.20-

Antisense strand
TAATTCAAGAAAAAAAATCTGGCAGGATTCCAGGAATATATGGAAGATTGGTAAAGTAGATTTTTGGGGGGCATGGCTTTACTTTTTTTTTTTAAGAAAGTGTAACTTATTTTTTTGCCTTGACAACCATATTTCAAGTGTCACTGTATATAAAATAAGATTCATTTTGTTTGTTTTAAGGCACATTTATTTTTAAACATTTTGCCCTTACAGTTTCTTGTTTACTTAGCTTTAGATAAATACAATTATT
.......................................................................((.(((..(((((((((.....)))))))))..............))).))................................................................................................................................
.......................................................................72.............................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................TTTAAGAAAGTGTAACCTA............................................................................................................................................. 191.000.00------------------1.00------
.............................................................................................................................................................................................................CCTTACAGTTTCTTGAGCA.......................... 191.000.00-------------1.00-----------
...............................................................................................................................................CTGTATATAAAATAAGAACAG...................................................................................... 211.000.00--------------1.00----------
.......................................................CCCCCCAAAAATCTAC................................................................................................................................................................................... 1690.110.11------------------------0.11