ID: uc010huu.2_intron_14_0_chr3_142089463_r.5p
GENE: (12)
chr3:142089881-142090130-


(1)
AGO2.ip 		(3)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
GAGGATGTGTTCTATGAAGATGACATTTGGCCTGGAGAAAATGAGAATGGGTAAGCAAGATTTATGATATTTATTACCTCATAGTTCAATTCAGTGTTTTCAATGACAACTGCAGCTGGTTTCTCAAGAATTTCATATTACTTTTTTTTTTTTTTTTTTGAGACAGGTTCTTACTCTCTTGCCCGAATGCAGTGGCTCAAATGTGGCTCACTTTAGCCTTGGTTCCCTGGACTCAAACAATCCTCCTACC
...........................................................................................................((((......)))).((((((((........................))))))))........................................................................................
...................................................................................................100............................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)
......................................................................................................................................ATATTACTTTTTTTTTTTTTTACG............................................................................................2436.000.009.0011.007.009.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTACG..........................................................................................2632.000.008.006.009.009.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTATT........................................................................................2531.000.0014.0015.00-2.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTACG.........................................................................................2730.000.007.008.0010.005.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTACG.............................................................................................2326.000.008.003.0010.005.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTACG........................................................................................2825.000.008.007.007.003.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTACG.......................................................................................2921.000.009.001.005.005.00--1.00-----------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTACG...........................................................................................2521.000.006.005.007.003.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTACG...............................................................................................2111.000.002.004.004.001.00--------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTG.............................................................................................2916.002.00-3.003.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTG.................................................................................................256.000.001.001.001.003.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTACTC.......................................................................................275.000.001.002.00--2.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCAAG.......................................................................................265.000.00--2.001.001.001.00------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTG...............................................................................................2715.001.001.00-2.001.00-1.00------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCTG.........................................................................................254.000.00-1.001.00-2.00-------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAGCGGG....................................................................................274.000.00----4.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTACTC.........................................................................................254.000.00---1.003.00-------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTCCAG.......................................................................................254.000.002.00-1.001.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTACT...........................................................................................254.000.001.00-3.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTG..................................................................................................244.000.00--2.002.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTATG.......................................................................................293.000.003.00-----------------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTTTTG...............................................................................................2613.001.001.00-1.001.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTATTT.......................................................................................263.000.001.002.00----------------------------------------
........................ATTTGGCCTGGAGAAAATGAGAATGG........................................................................................................................................................................................................2613.003.00--------1.00-----------------1.00-------1.00-------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTCG...........................................................................................313.000.00--1.002.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCGG.........................................................................................243.000.00----1.002.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTAACG...........................................................................................253.000.00--3.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCTTT.......................................................................................273.000.001.002.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTTCG.......................................................................................293.000.00-1.001.001.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTATTG.........................................................................................253.000.00-3.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTCC........................................................................................283.000.001.00-1.001.00--------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTG............................................................................................303.000.00-2.00-1.00--------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTG..............................................................................................283.000.00--2.00---1.00-----------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTAAAT.......................................................................................273.000.002.001.00----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCGGG........................................................................................253.000.00----3.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCTC........................................................................................262.000.001.00-----1.00-----------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTCACG........................................................................................282.000.00--2.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCATT.......................................................................................272.000.00-1.00---1.00------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTT..............................................................................................2812.002.00--2.00---------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTCGG.......................................................................................292.000.00--1.001.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTACT........................................................................................282.000.002.00-----------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTG................................................................................................262.000.00-1.001.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTATAT.......................................................................................282.000.001.001.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTCAG...........................................................................................252.000.001.00--1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTATG.........................................................................................272.000.00-1.001.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTCTTA........................................................................................272.000.002.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCACT.......................................................................................262.000.00----2.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTACT..........................................................................................262.000.00-1.00-1.00--------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTG...................................................................................................232.000.00--1.001.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATTT.......................................................................................272.000.001.001.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTACT............................................................................................242.000.00-1.00-1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTACA.......................................................................................292.000.00-1.00-1.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCGG........................................................................................252.000.00---1.001.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTACG...........................................................................................242.000.00-1.001.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTGGG..........................................................................................242.000.00----1.001.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTAC........................................................................................282.000.001.00--1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTAATG.......................................................................................272.000.00-1.00-1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTACG................................................................................................202.000.001.00-1.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTACG........................................................................................262.000.00-2.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCTG........................................................................................262.000.00---1.001.00-------------------------------------
.............ATGAAGATGACATTTGGCCTGGAGAAA..................................................................................................................................................................................................................2712.002.00-----------2.00------------------------------
.................AGATGACATTTGGCCTGGAGAA...................................................................................................................................................................................................................2212.002.00-------2.00----------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTCTTC..........................................................................................242.000.00----1.00-1.00-----------------------------------
.............ATGAAGATGACATTTGGCCTGGAGAAAATGAGAATG.........................................................................................................................................................................................................3612.002.00---------------2.00--------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTTG...........................................................................................3112.001.00-1.001.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTAG..............................................................................................212.000.00-1.00-1.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCTAG........................................................................................252.000.00---1.001.00-------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTCGG........................................................................................242.000.00-1.00---1.00------------------------------------
......................ACATTTGGCCTGGAGAAAATGAGAATGG........................................................................................................................................................................................................2812.002.00---------2.00--------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTTTG................................................................................................252.000.001.001.00----------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAAGGG.....................................................................................262.000.00----2.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTAAAA.......................................................................................262.000.001.00-1.00---------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGAGCTGG....................................................................................292.000.00----2.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTCG........................................................................................282.000.001.001.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTAT.........................................................................................252.000.001.001.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTG..........................................................................................2671.711.710.570.290.430.43--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCGCA........................................................................................251.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTCGG............................................................................................241.000.00----1.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCTCG.......................................................................................261.000.00--1.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTGG.............................................................................................291.000.00-1.00----------------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTTTTTTTG............................................................................................291.000.00--1.00---------------------------------------
.........................................................................................................................TCTCAAGAATTTCATTCTT..............................................................................................................191.000.00-------------------------------1.00----------
.....................................................................................................................................CATATTACTTTTTTTTTTTTACG..............................................................................................231.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTATG..........................................................................................261.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTGTGA.......................................................................................271.000.00----1.00-------------------------------------
.....................................................................................................................................CATATTACTTTTTTTTTCTTG................................................................................................211.000.00--1.00---------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCATG.......................................................................................261.000.00--1.00---------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAGACATC...................................................................................281.000.00----1.00-------------------------------------
.......................CATTTGGCCTGGAGAAAATGAGAATG.........................................................................................................................................................................................................2611.001.00---------------------1.00--------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTACAA.......................................................................................281.000.001.00-----------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTCTG.............................................................................................2911.001.00--1.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTTT...........................................................................................3111.001.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCCAG.......................................................................................271.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTCACG.............................................................................................231.000.00---1.00--------------------------------------
..................................................................................................................................TTTCATATTACTTTTTTTTTTTTTTTTTT...........................................................................................2911.001.00---1.00--------------------------------------
..............TGAAGATGACATTTGGCCTGGAGA....................................................................................................................................................................................................................2411.001.00----------------1.00-------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCGTG.......................................................................................261.000.00----1.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTATTG.........................................................................................261.000.00-1.00----------------------------------------
.................AGATGACATTTGGCCTGGAGAAAA.................................................................................................................................................................................................................2411.001.00-------------1.00----------------------------
..................................................................................................................................TTTCATATTACTTTTTTTTTTTTTG...............................................................................................251.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTCCG.............................................................................................231.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCTAG.......................................................................................261.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCAG.........................................................................................251.000.00---1.00--------------------------------------
.....TGTGTTCTATGAAGATGACAT................................................................................................................................................................................................................................2111.001.00-----------------1.00------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCTC........................................................................................251.000.00-----1.00------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTACAA.......................................................................................261.000.00--1.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTCTG...............................................................................................271.000.00--1.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTGGG.............................................................................................221.000.00-----1.00------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTAGTT.........................................................................................261.000.00------1.00-----------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTAATG..............................................................................................211.000.001.00-----------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAGACCAG...................................................................................281.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTCT..........................................................................................261.000.00--1.00---------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTCG.........................................................................................271.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTATG........................................................................................271.000.001.00-----------------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTG..................................................................................................231.000.00--1.00---------------------------------------
......................ACATTTGGCCTGGAGAAAATGAGAA...........................................................................................................................................................................................................2511.001.00------------------------1.00-----------------
...........................TGGCCTGGAGAAAATGAGA............................................................................................................................................................................................................1911.001.00---------------------------1.00--------------
....................................................................................................................................TCATATTACTTTTTTTTTTTTTTTTTCCTT........................................................................................301.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTACT.............................................................................................231.000.00---1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTAGG........................................................................................281.000.00--1.00---------------------------------------
.....................................................................................................................................................TTTTTTTTTTGAGACAGGTTGGAG.............................................................................241.000.00-----1.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTAACG..........................................................................................261.000.00-1.00----------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTGG...........................................................................................311.000.00------1.00-----------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTCTG........................................................................................271.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATAT.......................................................................................271.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCTCC........................................................................................251.000.00----1.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTCGC..........................................................................................251.000.00-----1.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTAT.........................................................................................271.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTAGT.............................................................................................231.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCTCG........................................................................................261.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTAAG.........................................................................................271.000.00-1.00----------------------------------------
.....................................................................................................................................CATATTACTTTTTTTTTTTTTTTACG...........................................................................................261.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATG........................................................................................261.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTC.........................................................................................271.000.00---1.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCATG........................................................................................251.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGAGAAAG....................................................................................291.000.00------1.00-----------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTAAA.......................................................................................291.000.00--1.00---------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTT............................................................................................3011.001.00--1.00---------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTCTTG..........................................................................................261.000.00------1.00-----------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTACTG.......................................................................................271.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTAGT..........................................................................................261.000.00--1.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTATTA.........................................................................................251.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTAC.........................................................................................271.000.00-1.00----------------------------------------
........GTTCTATGAAGATGACATTTGGCCTG........................................................................................................................................................................................................................2611.001.00-----------------------------1.00------------
........................................................................................................GACAACTGCAGCTGGCTG................................................................................................................................181.000.00-------------------------------------1.00----
.......................................................................................................................................TATTACTTTTTTTTTTTTTTATT............................................................................................231.000.00--1.00---------------------------------------
........GTTCTATGAAGATGACATTTGG............................................................................................................................................................................................................................2211.001.00-------------------------1.00----------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTATTA............................................................................................231.000.00-1.00----------------------------------------
...........CTATGAAGATGACATTTGGCCT.........................................................................................................................................................................................................................2211.001.00--------------------1.00---------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTATG........................................................................................281.000.00-1.00----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTAT.........................................................................................261.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTAC...........................................................................................251.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTATT..........................................................................................261.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTCCG...........................................................................................251.000.00--1.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCAGG.......................................................................................271.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCTGC........................................................................................251.000.00-----1.00------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTAATG.........................................................................................261.000.00-1.00----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTAAAA.......................................................................................281.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCCTT........................................................................................261.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCAGC.......................................................................................261.000.00-----1.00------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGTTGT......................................................................................271.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATAG.......................................................................................271.000.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTACCT.......................................................................................271.000.00----1.00-------------------------------------
..........................TTGGCCTGGAGAAAAGAGT.............................................................................................................................................................................................................191.000.00--------------------------------------1.00---
........................................................................................................................................ATTACTTTTTTTTTTTTTTTCTTG..........................................................................................241.000.00---1.00--------------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTTTT................................................................................................2511.001.00---1.00--------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAATAG.....................................................................................261.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTCGAG..........................................................................................251.000.00-----1.00------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCACC............................................................................................221.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTGACG.......................................................................................271.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCTAA.......................................................................................271.000.00---1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTATAT..........................................................................................261.000.00-1.00----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGAGAATG....................................................................................291.000.00-----1.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTATT.............................................................................................231.000.00---1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTGG............................................................................................241.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTAAAA.........................................................................................251.000.00---1.00--------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTCTCT..........................................................................................251.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGACGTG.....................................................................................281.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTCCG............................................................................................241.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTCCG.........................................................................................271.000.00---1.00--------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTGAAAAG.....................................................................................271.000.00----1.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTATA............................................................................................231.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTATAT..........................................................................................251.000.00--1.00---------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTACAC.......................................................................................261.000.00----1.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTCTG.........................................................................................261.000.00--1.00---------------------------------------
.............ATGAAGATGACATTTGGCCTGGAG.....................................................................................................................................................................................................................2411.001.00------------1.00-----------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCGGT........................................................................................251.000.00----1.00-------------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTT................................................................................................2611.001.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCAC.............................................................................................211.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCTAG........................................................................................261.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCCCT.......................................................................................271.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTAATG........................................................................................281.000.001.00-----------------------------------------
..................................................................................................................................TTTCATATTACTTTTTTTTTTTTTTTG.............................................................................................271.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTGTCG.........................................................................................271.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCCAG............................................................................................221.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTCCG........................................................................................281.000.00--1.00---------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTCGT........................................................................................241.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTCGCG............................................................................................241.000.00------1.00-----------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTACA........................................................................................281.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTTAC.......................................................................................291.000.00--1.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCGGG............................................................................................221.000.00-----1.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTCACG..........................................................................................261.000.001.00-----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTCCCG.......................................................................................261.000.00--1.00---------------------------------------
.......................CATTTGGCCTGGAGAAAATGAGAATGGG.......................................................................................................................................................................................................2811.001.00----------------------------1.00-------------
.........................................TGAGAATGGGTAAGCAAATC.............................................................................................................................................................................................201.000.00----------1.00-------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTGAG...............................................................................................271.000.00------1.00-----------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAATTT.....................................................................................261.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTAC............................................................................................241.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTAAC.........................................................................................271.000.00---1.00--------------------------------------
...........................TGGCCTGGAGAAAATGAGAATGGTG......................................................................................................................................................................................................251.000.00-----------------------------------1.00------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGAGCCGG....................................................................................291.000.00----1.00-------------------------------------
..........................TTGGCCTGGAGAAAATGAGAATGG........................................................................................................................................................................................................2411.001.00--------1.00---------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTGG............................................................................................3011.002.00--1.00---------------------------------------
....................................................................................................................................................................................GCCCGAATGCAGTGGTGTT...................................................191.000.00------------------------------------1.00-----
.......................................................................................................................................TATTACTTTTTTTTTTTTTTAACG...........................................................................................241.000.001.00-----------------------------------------
................................................................................................................CAGCTGGTTTCTCAAGAATC......................................................................................................................201.000.00------1.00-----------------------------------
...............GAAGATGACATTTGGCCTGGAGAA...................................................................................................................................................................................................................2411.001.00-------------1.00----------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTACC..........................................................................................261.000.001.00-----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTACC.......................................................................................291.000.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTACCC.........................................................................................251.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTCGG...........................................................................................251.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTAAC........................................................................................261.000.00-1.00----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTCATT.........................................................................................261.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTCGTT........................................................................................271.000.00-1.00----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTAATC............................................................................................231.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCAAT............................................................................................221.000.00--1.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTCTTT........................................................................................271.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTATTC.........................................................................................251.000.00--1.00---------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTAGG.........................................................................................271.000.00--1.00---------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTCCCG............................................................................................221.000.00---1.00--------------------------------------
.......................CATTTGGCCTGGAGAAAATGAGAATGGTGC.....................................................................................................................................................................................................301.000.00--------1.00---------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTGACACG.....................................................................................291.000.00------1.00-----------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAGTTC.....................................................................................261.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTCCG.......................................................................................291.000.001.00-----------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTGTCG.......................................................................................251.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCTTG.......................................................................................271.000.00-1.00----------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAACGG.....................................................................................261.000.00-----1.00------------------------------------
....................TGACATTTGGCCTGGAGAA...................................................................................................................................................................................................................1911.001.00-------------------1.00----------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTGTCG.......................................................................................261.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTTC........................................................................................281.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTCCG........................................................................................271.000.00---1.00--------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCAAC........................................................................................251.000.00---1.00--------------------------------------
.....................................................................................................................................CATATTACTTTTTTTTCG...................................................................................................181.000.00---1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTTGG.......................................................................................291.000.00------1.00-----------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTCTC.........................................................................................261.000.00-----1.00------------------------------------
.................AGATGACATTTGGCCTGGAGAAA..................................................................................................................................................................................................................2311.001.00-------1.00----------------------------------
................................................................................................................................AATTTCATATTACTTTTTTTTTTTTTTTTTTTG.........................................................................................3311.001.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATTG.......................................................................................271.000.001.00-----------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTCT...........................................................................................241.000.00------1.00-----------------------------------
....................................................................................................................................TCATATTACTTTTTTTTTTTTTTTTTTTTTG.......................................................................................311.000.00-1.00----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTAACC.......................................................................................261.000.00----1.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCGAT........................................................................................251.000.00--1.00---------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTATTG.......................................................................................261.000.00------1.00-----------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTCTC..........................................................................................251.000.00-----1.00------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTCAG..............................................................................................221.000.00-1.00----------------------------------------
..........................................................................................................................................TACTTTTTTTTTTTTTTTTTTGTGG.......................................................................................251.000.00-1.00----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTCAC.........................................................................................251.000.00------1.00-----------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTCCAG..........................................................................................241.000.00------1.00-----------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTATTA..........................................................................................251.000.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTCGC........................................................................................261.000.00-----1.00------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTATTT............................................................................................231.000.00------1.00-----------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTCCGG...........................................................................................251.000.00----1.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTACTC.......................................................................................261.000.00-----1.00------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTATTA.........................................................................................261.000.00-1.00----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCACT........................................................................................251.000.00----1.00-------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCTGG........................................................................................251.000.00----1.00-------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTATG...........................................................................................241.000.00-1.00----------------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTTATC........................................................................................251.000.00-1.00----------------------------------------
...........................................................................................................................................ACTTTTTTTTTTTTTTTTTTGAGACAGCGCC................................................................................311.000.00----1.00-------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTATG..........................................................................................241.000.00-1.00----------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTACG.................................................................................................191.000.00---1.00--------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTGTT........................................................................................261.000.00------1.00-----------------------------------
.........................................................................................................................................TTACTTTTTTTTTTTTTTTTTCCCG........................................................................................251.000.00---1.00--------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTAACG.......................................................................................291.000.001.00-----------------------------------------
.......................................................................................................................................................................................................................................CTCAAACAATCCTCCTACCGCAG231.000.00------------------1.00-----------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTAACC.......................................................................................271.000.00-1.00----------------------------------------
.....................................................................................................................................CATATTACTTTTTTTTTTTTTTTTTTACG........................................................................................291.000.001.00-----------------------------------------
........................................................................................................................................ATTACTTTTTTTTTTTTTTTTTTATT........................................................................................261.000.00-1.00----------------------------------------
.................................................................................................................................ATTTCATATTACTTTTTTTTTTTTTTTG.............................................................................................281.000.00--1.00---------------------------------------
.......................................................................................................................................TATTACTTTTTTTTTTTTCAAG.............................................................................................221.000.00----1.00-------------------------------------
......................................................................................................................................ATATTACTTTTTTTTTTTTTTTTTTTATT.......................................................................................291.000.00--1.00---------------------------------------
....................TGACATTTGGCCTGGAGAAAATGAGAA...........................................................................................................................................................................................................2711.001.00----------------------------------------1.00-
.......................................................................................................................................TATTACTTTTTTTTTTTTTTTTTTACG........................................................................................271.000.00---1.00--------------------------------------

Antisense strand
GAGGATGTGTTCTATGAAGATGACATTTGGCCTGGAGAAAATGAGAATGGGTAAGCAAGATTTATGATATTTATTACCTCATAGTTCAATTCAGTGTTTTCAATGACAACTGCAGCTGGTTTCTCAAGAATTTCATATTACTTTTTTTTTTTTTTTTTTGAGACAGGTTCTTACTCTCTTGCCCGAATGCAGTGGCTCAAATGTGGCTCACTTTAGCCTTGGTTCCCTGGACTCAAACAATCCTCCTACC
...........................................................................................................((((......)))).((((((((........................))))))))........................................................................................
...................................................................................................100............................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)
......................................................................................................................................................................................................................................ACTCAAACAATCCTCCTATCTG 223.000.00--------------1.00--------1.00--------1.00---------
.........................................................................................................................................................................................................................................CAAACAATCCTCCTAGCC 181.000.00--------------1.00---------------------------
........................................................................................................................................................................................................................................TCAAACAATCCTCCTACTCC 201.000.00----------------------1.00-------------------
..........................................................................TACCTCATAGTTCAAGAAT............................................................................................................................................................. 191.000.00---------------------------------------1.00--
.......................................................................................................................................................................................................................................AGGAGGATTGTTTGAG... 1601.001.00------------------------------1.00-----------
..............................................................................................................................................................TGAGACAGGTTCTTACTTA......................................................................... 191.000.00---------------------------------1.00--------
..........................................................................TACCTCATAGTTCAATTGAA............................................................................................................................................................ 201.000.00-----------------------------------------1.00
.........................................................................................................................................................................................AATGCAGTGGCTCAATGCC.............................................. 191.000.00------------1.00-----------------------------
.........................TTTGGCCTGGAGAAAGTTT.............................................................................................................................................................................................................. 191.000.00----------1.00-------------------------------