ID: uc010htg.2_intron_3_0_chr3_129546921_r.3p
GENE: (2)
chr3:129546871-129547120-


(5)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(3)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTCTAAAATGACCCACAATGCTTTGGAGAACATTAACGTGATTGGCCAAGGCTTGAAGCATCTCTTCCAGCACCAGCGCAGGAGGTCATCAGTGTCTCCACATGATGTGCAGCAAATTCAGGCAGATCCAGAACCTGAAATGGATCTGGAAAGCCAGAACGCATGTGCTGAGATTGATGGTGTCCCCACCCACCCCACAGCTCTGAATCGTGTCCTGCAGCAGATTCGAGTGCCACCCAAGATGAAGAGA
..........................................................((((...((((((((..((((((((((.((....)))))))......))))).((...(((.(((...((((((.((......)).))))))..))).))).))..)))))).))..)))).......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GCTTGAAGCATCTCTGGAC.....................................................................................................................................................................................1927.000.0015.0012.00--------------------------------------
..................................................GCTTGAAGCATCTCTGG.......................................................................................................................................................................................179.000.004.005.00--------------------------------------
..................................................GCTTGAAGCATCTCTGGA......................................................................................................................................................................................183.000.00-3.00--------------------------------------
..................................................GCTTGAAGCATCTCTGTAC.....................................................................................................................................................................................192.000.001.001.00--------------------------------------
.................................................................................................................................................................CATGTGCTGAGATTGATGGTGTCCCCAC.............................................................2812.002.00---2.00------------------------------------
.......................................................................................................................................................................CTGAGATTGATGGTGTCCCCACCCACCCCAC....................................................3112.002.00-------2.00--------------------------------
.........................................................................................................................................................CCAGAACGCATGTGCTGAGATTGATG.......................................................................2612.002.00----2.00-----------------------------------
.................................TAACGTGATTGGCCAAGGCTTGAAGC...............................................................................................................................................................................................2612.002.00--2.00-------------------------------------
..............................CATTAACGTGATTGGCCAAGGC......................................................................................................................................................................................................2212.002.00-----------2.00----------------------------
......................................................................................................................................................................GCTGAGATTGATGGTGTCCCCACCCACCCCAC....................................................3211.001.00---------------------1.00------------------
................................TTAACGTGATTGGCCAAGGCTTGAAGC...............................................................................................................................................................................................2711.001.00--1.00-------------------------------------
..................TGCTTTGGAGAACATTAACGTGATTGGCC...........................................................................................................................................................................................................2911.001.00-----1.00----------------------------------
....................................................................................................................................................................................................................TCCTGCAGCAGATTCGAGTGT.................211.000.00--1.00-------------------------------------
...............................................................................................................................................................CGCATGTGCTGAGATTGATGGTGTCCCCA..............................................................2911.001.00-----1.00----------------------------------
...........................................................................................................................................................AGAACGCATGTGCTGAGATTG..........................................................................2111.001.00--------------1.00-------------------------
..................................................GCTTGAAGCATCTCTGT.......................................................................................................................................................................................171.000.001.00---------------------------------------
........................................................................................................................................GAAATGGATCTGGAATTT................................................................................................181.000.00-------------------------1.00--------------
................................................................................................TCCACATGATGTGCAGCAAATTCAGGCA..............................................................................................................................2811.001.00--1.00-------------------------------------
..................TGCTTTGGAGAACATTAAC.....................................................................................................................................................................................................................1911.001.00-----------------1.00----------------------
.....................................................................................................................................................................................................................CCTGCAGCAGATTCGAG....................1711.001.00--------------------------------1.00-------
..................................AACGTGATTGGCCAAGGCTTGAAGCATCTC..........................................................................................................................................................................................3011.001.00-----1.00----------------------------------
................................................................................................................................................TCTGGAAAGCCAGAACGCA.......................................................................................1911.001.001.00---------------------------------------
......................................................................CACCAGCGCAGGAGGTC...................................................................................................................................................................1711.001.00---------------------------1.00------------
............................AACATTAACGTGATTGGCCAAGGCTTGAAG................................................................................................................................................................................................3011.001.00--------1.00-------------------------------
..................................................GCTTGAAGCATCTCTGGAA.....................................................................................................................................................................................191.000.00-1.00--------------------------------------
.................ATGCTTTGGAGAACATTAACA....................................................................................................................................................................................................................211.000.00----------------1.00-----------------------
...............................................................................................................................................................................................ACCCCACAGCTCTGAATCGTGTCCTGCAGC.............................3011.001.00----------------------------1.00-----------
...................................................................................................................................................................................................CACAGCTCTGAATCGTGTCCTGCAGC.............................2611.001.00-------------1.00--------------------------
...................................ACGTGATTGGCCAAGGCTTGAAGC...............................................................................................................................................................................................2411.001.00--------------------1.00-------------------
..................................................GCTTGAAGCATCTCTTGATT....................................................................................................................................................................................201.000.001.00---------------------------------------
................................TTAACGTGATTGGCCAAGGCTTGAAGCA..............................................................................................................................................................................................2811.001.00--1.00-------------------------------------
.............................................................................................................................................................................................................AATCGTGTCCTGCAGC.............................1611.001.00------------------------------1.00---------
..................................................GCTTGAAGCATCTCTTGA......................................................................................................................................................................................181.000.001.00---------------------------------------
...........................................................................................................................................................AGAACGCATGTGCTGAGATTGAT........................................................................2311.001.00------------------1.00---------------------
.................................TAACGTGATTGGCCAAGGCTTGAAGCA..............................................................................................................................................................................................2711.001.00----1.00-----------------------------------
.................................................................................................................................................................CATGTGCTGAGATTGATGGTGTC..................................................................2311.001.00---1.00------------------------------------
..........................................................................................................................................................................................................CTGAATCGTGTCCTGCAGCA............................2011.001.00--------1.00-------------------------------
..............ACAATGCTTTGGAGAACATTAACGTGATTGGC............................................................................................................................................................................................................3211.001.00--1.00-------------------------------------
..............................................................................................................................................................................................................ATCGTGTCCTGCAGCAGAT.........................1911.001.00------------------------1.00---------------
..................................................GCTTGAAGCATCTCTGGC......................................................................................................................................................................................181.000.001.00---------------------------------------
...........................................................ATCTCTTCCAGCACCTAG.............................................................................................................................................................................181.000.00----------------------1.00-----------------
........TGACCCACAATGCTTTGGAGAACATTAACGTGT.................................................................................................................................................................................................................331.000.00--1.00-------------------------------------
.......................................................................................................................AGGCAGATCCAGAACCTG.................................................................................................................1820.500.50----------------------------------0.50-----
..................................................................................................................................GAACCTGAAATGGATCTGGAAAGCC...............................................................................................2520.500.50---0.50------------------------------------
........................................................................................................................................GAAATGGATCTGGAAAGC................................................................................................1830.330.33-----------------------------------0.33----
.......................................................................................................................................TGAAATGGATCTGGAAAGC................................................................................................1930.330.33-------------------------------------0.33--
.......................................................................................................................................TGAAATGGATCTGGAAAG.................................................................................................1830.330.33------------------------------------0.33---
......................................................................................................................................CTGAAATGGATCTGGA....................................................................................................1670.140.14--0.14-------------------------------------
.......................................................................................................................................TGAAATGGATCTGGAA...................................................................................................1670.140.14---------------------------------------0.14

Antisense strand
GTCTAAAATGACCCACAATGCTTTGGAGAACATTAACGTGATTGGCCAAGGCTTGAAGCATCTCTTCCAGCACCAGCGCAGGAGGTCATCAGTGTCTCCACATGATGTGCAGCAAATTCAGGCAGATCCAGAACCTGAAATGGATCTGGAAAGCCAGAACGCATGTGCTGAGATTGATGGTGTCCCCACCCACCCCACAGCTCTGAATCGTGTCCTGCAGCAGATTCGAGTGCCACCCAAGATGAAGAGA
..........................................................((((...((((((((..((((((((((.((....)))))))......))))).((...(((.(((...((((((.((......)).))))))..))).))).))..)))))).))..)))).......................................................................
..................................................51...............................................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
......AATGACCCACAATGCGGT.................................................................................................................................................................................................................................. 182.000.00-----------------------1.00--1.00-------------
................................................................................................................................................................................................ACGATTCAGAGCTGTGGGG....................................... 1912.002.00----------2.00-----------------------------
....................................................................................................CATGATGTGCAGCAAGTTT................................................................................................................................... 192.000.00---------2.00------------------------------
..........................................................................................................................................................................................................CTGCTGCAGGACACGATTCAG........................... 2112.002.00------2.00---------------------------------
.............................................................................................................................................................................................................ATCTGCTGCAGGACACGATT......................... 2011.001.00------------1.00---------------------------
..........................................................CATCTCTTCCAGCACCGTA............................................................................................................................................................................. 191.000.00-------------------------------1.00--------
........................................................................................................................................................................................................GCAGGACACGATTCAGAG................................ 1811.001.00------------1.00---------------------------
........................................................................................................................................................................................................CTGCTGCAGGACACGATTCAGAG........................... 2311.001.00-----------------------------1.00----------
..........................................................CATCTCTTCCAGCACCAACA............................................................................................................................................................................ 201.000.00-------------------1.00--------------------
......AATGACCCACAATGCGGTT................................................................................................................................................................................................................................. 191.000.00---------------------------------1.00------
......AATGACCCACAATGCGGTA................................................................................................................................................................................................................................. 191.000.00---------------1.00------------------------
...............................................................................................................................................................................GGGTGGGGACACCATC........................................................... 1670.140.14--------------------------------------0.14-