ID: uc010hsv.1_intron_3_0_chr3_128525293_f.5p
GENE: RAB7A(4)
chr3:128525243-128525492+


(2)
AGO2.ip 		(4)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(4)
HELA 		(8)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(34)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCCAGTCTCTCGGTGTGGCCTTCTACAGAGGTGCAGACTGCTGCGTTCTGGTATTTGATGTGACTGCCCCCAACACATTCAAAACCCTAGATAGCTGGAGAGATGAGTTTCTCATCCAGGCCAGTCCCCGAGATCCTGAAAACTTCCCATTTGTTGTGTTGGGAAACAAGATTGACCTCGAAAACAGACAAGTAAGTACCAACGATGATAGATATTGTCACAGACACCTGCTCCCCAGGGGCCTTGTGAA
.............................................................................................(((((...((((((...))))))....)))))...((((.((........((((((..........))))))........)).))))......................................................................
...................................................................................84...............................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
..................................................................................AACCCTAGATAGCTGGAGAGATGAGTTTCTCATCCAGGCCAGTCCCCGAGATCCTGAAAACTT.........................................................................................................6315.005.00--------5.00---------------------------------------------------------------------------------------
........................................................................................AGATAGCTGGAGAGATGAGA..............................................................................................................................................205.000.00-5.00----------------------------------------------------------------------------------------------
........................................................................................................................................................GTTGTGTTGGGAAACAAGATTGACC.........................................................................2514.004.00-4.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................GATTGACCTCGAAAACAGACAAGTGGC......................................................274.000.00--1.00--1.00---------2.00--------------------------------------------------------------------------------
.......................................................................................TAGATAGCTGGAGAGATG.................................................................................................................................................1814.004.003.00--------------------------1.00--------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGAC.............................................................2113.003.002.00-----------------------1.00-----------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACAAGT.........................................................2513.003.00--1.00----------------2.00----------------------------------------------------------------------------
........................................................................................................................................................GTTGTGTTGGGAAACAAGATTG............................................................................2213.003.00--1.00--------------------------------------------1.00---------------1.00--------------------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAGACAAGTGGCC.....................................................3013.001.00-------1.00--------------1.00-------1.00-----------------------------------------------------------------
............................AGGTGCAGACTGCTGCGTTC..........................................................................................................................................................................................................2013.003.00--------------3.00---------------------------------------------------------------------------------
.............................................................................................................................CCCCGAGATCCTGAAAACTTCCCATTTGTTGT.............................................................................................3213.003.00----------1.00-----------------2.00-------------------------------------------------------------------
............................AGGTGCAGACTGCTGCGTTCCGG.......................................................................................................................................................................................................2313.003.00------3.00-----------------------------------------------------------------------------------------
.......................................................................................TAGATAGCTGGAGAGATGAG...............................................................................................................................................2013.003.001.00--1.00-1.00------------------------------------------------------------------------------------------
.......................................................................................TAGATAGCTGGAGAGATGAGTTTC...........................................................................................................................................2412.002.001.00----------1.00------------------------------------------------------------------------------------
.................................................................................................................................................CCCATTTGTTGTGTTGGG.......................................................................................1812.002.00---------------------2.00--------------------------------------------------------------------------
...........................................................................................TAGCTGGAGAGATGAGTT.............................................................................................................................................1812.002.00---------2.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................TTGACCTCGAAAACAGACAA...........................................................2012.002.00------------------1.00-------------------1.00---------------------------------------------------------
................................................................................AAAACCCTAGATAGCTGGAGAGAT..................................................................................................................................................2412.002.00---1.00-1.00------------------------------------------------------------------------------------------
.......................................................................................TAGATAGCTGGAGAGATGAGTTT............................................................................................................................................2312.002.00---1.00-1.00------------------------------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACAAGTGG.......................................................2712.003.00---------------------------------2.00--------------------------------------------------------------
..........................................................................................ATAGCTGGAGAGATGAGTTT............................................................................................................................................2012.002.00---1.00-------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAG...............................................................1912.002.001.00--------1.00--------------------------------------------------------------------------------------
................................................TGGTATTTGATGTGACT.........................................................................................................................................................................................1712.002.00------------------2.00-----------------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACAAG..........................................................2412.002.00-2.00----------------------------------------------------------------------------------------------
...AGTCTCTCGGTGTGGCCTTC...................................................................................................................................................................................................................................2012.002.00-------------1.00-----------------1.00----------------------------------------------------------------
...........................GAGGTGCAGACTGCTGCGTTCT.........................................................................................................................................................................................................2212.002.00---2.00--------------------------------------------------------------------------------------------
....................................................................................CCCTAGATAGCTGGAGAGATGAGTT.............................................................................................................................................2512.002.00------------------------------------2.00-----------------------------------------------------------
..........................................................................................ATAGCTGGAGAGATGAGTT.............................................................................................................................................1912.002.00------------------------------------------------------------------------------1.001.00----------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACAAGTGGC......................................................2812.003.00--2.00---------------------------------------------------------------------------------------------
..........................AGAGGTGCAGACTGCTGCGTTCTGGT......................................................................................................................................................................................................2612.002.00-------------2.00----------------------------------------------------------------------------------
......................................TGCTGCGTTCTGGTATTTGATGTGAC..........................................................................................................................................................................................2612.002.001.00--------------------------------------1.00--------------------------------------------------------
.....................................................................................................................................................................................AAACAGACAAGTAAGTACCAAC...............................................2212.002.00-------------------------2.00----------------------------------------------------------------------
.....................................................................................................................................................................ACAAGATTGACCTCGAA....................................................................1712.002.00-----------------------------2.00------------------------------------------------------------------
..........................AGAGGTGCAGACTGCTG...............................................................................................................................................................................................................1731.331.33--------------------0.33---------------------0.67-----------------------------------------------0.33-----
.......TCTCGGTGTGGCCTTCTACAGAG............................................................................................................................................................................................................................2311.001.00--------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................AACAAGATTGACCTCG......................................................................1621.001.00----------1.00-------------------------------------------------------------------------------------
........................................................................................AGATAGCTGGAGAGATGAGTT.............................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------------------------
.....................................................................................CCTAGATAGCTGGAGAGATGAG...............................................................................................................................................2211.001.00---------------------------------------------------------------------------1.00--------------------
................................................................................................................................CGAGATCCTGAAAACTTCCCATTTGTT...............................................................................................2711.001.00----------------------------------------------1.00-------------------------------------------------
...............................................................................................................................CCGAGATCCTGAAAACTTCCCA.....................................................................................................2211.001.00---------------------------------------------------------------------------------1.00--------------
.................................................GGTATTTGATGTGACTGCAC.....................................................................................................................................................................................201.000.001.00-----------------------------------------------------------------------------------------------
........................................................................................................GAGTTTCTCATCCAGGCC................................................................................................................................1811.001.00---------------------------1.00--------------------------------------------------------------------
.......................................................................................................TGAGTTTCTCATCCAGGCC................................................................................................................................1911.001.00-------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................TGTGTTGGGAAACAAGATTGACCTCGAAA...................................................................2911.001.00------------------------------1.00-----------------------------------------------------------------
.......................................................................................................TGAGTTTCTCATCCAGGC.................................................................................................................................1811.001.00----------------1.00-------------------------------------------------------------------------------
..................................AGACTGCTGCGTTCTGGTA.....................................................................................................................................................................................................1911.001.00----1.00-------------------------------------------------------------------------------------------
........................................CTGCGTTCTGGTATTTGATGT.............................................................................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------------------------
......................................................................................CTAGATAGCTGGAGAGATGAG...............................................................................................................................................2111.001.00-------------------------------1.00----------------------------------------------------------------
.............................................................................................................................CCCCGAGATCCTGAAA.............................................................................................................1611.001.00----------------1.00-------------------------------------------------------------------------------
................................................................................................................................................TCCCATTTGTTGTGTTGGG.......................................................................................1911.001.00--------------------------------1.00---------------------------------------------------------------
..........................................GCGTTCTGGTATTTGATGTGACTGCC......................................................................................................................................................................................2611.001.00--1.00---------------------------------------------------------------------------------------------
........................................................................................................................................TGAAAACTTCCCATTTGTTGTGTTGGGA......................................................................................2811.001.00-------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAGAC.............................................................2211.001.00-------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................TCCCCAGGGGCCTTGTTCCG201.000.00------------------------------------------------------------------1.00-----------------------------
...................................................................CCCCAACACATTCAAAAC.....................................................................................................................................................................1811.001.00-------------------------------------------------------------1.00----------------------------------
...AGTCTCTCGGTGTGGCCTTCTACAG..............................................................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................CATTTGTTGTGTTGGGAAA....................................................................................1911.001.00---------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................ACAAGATTGACCTCGAAAACAGACAAGTGGCC.....................................................321.000.00------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAGACAAGT.........................................................2611.001.00--1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACAAGTGGCC.....................................................2911.003.00--------------------------------1.00---------------------------------------------------------------
........................................................................................................................................................................AGATTGACCTCGAAAACA................................................................1811.001.001.00-----------------------------------------------------------------------------------------------
................................................................................................................................CGAGATCCTGAAAACTTCCGTAG...................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------
............................AGGTGCAGACTGCTGCGTTCTGGTACTTG.................................................................................................................................................................................................291.000.00-------------------------------------------------------------------------1.00----------------------
.......................................................................................TAGATAGCTGGAGAGATGAGTT.............................................................................................................................................2211.001.001.00-----------------------------------------------------------------------------------------------
................................................................................................................................CGAGATCCTGAAAACTT.........................................................................................................1711.001.00----------1.00-------------------------------------------------------------------------------------
...................................................................................ACCCTAGATAGCTGGAGAG....................................................................................................................................................1911.001.00----------------------------------------------------------------------1.00-------------------------
......................................................TTGATGTGACTGCCCCCAACAC..............................................................................................................................................................................2211.001.00----------------1.00-------------------------------------------------------------------------------
....................................................................................................................................................................AACAAGATTGACCTCGAAAACAGACAA...........................................................2711.001.00-1.00----------------------------------------------------------------------------------------------
...............................TGCAGACTGCTGCGTTCTGG.......................................................................................................................................................................................................2011.001.00-----------1.00------------------------------------------------------------------------------------
............................AGGTGCAGACTGCTGCGTTCTGG.......................................................................................................................................................................................................2311.001.00------1.00-----------------------------------------------------------------------------------------
..................................................................CCCCCAACACATTCAAAACCCAG.................................................................................................................................................................231.000.00----------------------------------------------------------------------------1.00-------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAG...............................................................2011.001.00-------------------------------------------------------1.00----------------------------------------
............................AGGTGCAGACTGCTGCGT............................................................................................................................................................................................................1811.001.00---------------------------------------------1.00--------------------------------------------------
............................................GTTCTGGTATTTGATGTGACTG........................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------1.00-------------
...............................................................................................................................................................................CCTCGAAAACAGACAAGTGGCC.....................................................221.000.00----------1.00-------------------------------------------------------------------------------------
.........................................................................................GATAGCTGGAGAGATGAGTTA............................................................................................................................................2111.001.00--------------------------------------------------------------------------1.00---------------------
........................................................................................................................................................................AGATTGACCTCGAAAACAGACA............................................................2211.001.00-----------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................ATTGACCTCGAAAACAGACA............................................................2011.001.00----------------------------------------------------------1.00-------------------------------------
.................................................................................................................................................................GGAAACAAGATTGACCTCGAAAACAGAC.............................................................2811.001.00-----1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................AACAAGATTGACCTCGAAAACAGAC.............................................................2511.001.00----1.00-------------------------------------------------------------------------------------------
...................................................................................ACCCTAGATAGCTGGAGAGA...................................................................................................................................................2011.001.00-----------------1.00------------------------------------------------------------------------------
..................................................GTATTTGATGTGACTGCCC.....................................................................................................................................................................................1921.001.00---------------------------------------0.50-------------------------------------------------0.50------
.............................................................................................................................CCCCGAGATCCTGAAAACTTC........................................................................................................2111.001.00--------------------1.00---------------------------------------------------------------------------
.............................GGTGCAGACTGCTGCGTTCTGG.......................................................................................................................................................................................................2211.001.00------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................CTGAAAACTTCCCATTTGTTGT.............................................................................................2211.001.00-----------------1.00------------------------------------------------------------------------------
................................................TGGTATTTGATGTGACTGCCCC....................................................................................................................................................................................2211.001.00----1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................AACAAGATTGACCTCGAAAAC.................................................................2111.001.00---------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................TGACCTCGAAAACAGACAAGTGGC......................................................241.000.00----1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................CCTCGAAAACAGACAAGTG........................................................191.000.00-----------------------------------------------------------------------------1.00------------------
.............................................................................................................................................................GTTGGGAAACAAGATTGACCTCGAAAAC.................................................................2811.001.00-------------------------------------1.00----------------------------------------------------------
.............................................................................................................................CCCCGAGATCCTGAAAACT..........................................................................................................1911.001.00------------------------1.00-----------------------------------------------------------------------
...AGTCTCTCGGTGTGGCCTTTT..................................................................................................................................................................................................................................211.000.00--------------------------------------------------------1.00---------------------------------------
.....................................................................................................................AGGCCAGTCCCCGAGATA...................................................................................................................181.000.00---1.00--------------------------------------------------------------------------------------------
................................................................................................................................CGAGATCCTGAAAACTTCC.......................................................................................................1911.001.00------------------------------------------------1.00-----------------------------------------------
..............................................................................................................................................................................................................GATAGATATTGTCACAGACACC......................2211.001.00-----1.00------------------------------------------------------------------------------------------
............................AGGTGCAGACTGCTGCGTTCT.........................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------1.00------------
.................................................................................................................................................................................TCGAAAACAGACAAGTGGC......................................................191.000.00--1.00---------------------------------------------------------------------------------------------
......................................................................................................ATGAGTTTCTCATCCAGGCC................................................................................................................................2011.001.00--------------------------------------------------1.00---------------------------------------------
.....................TCTACAGAGGTGCAGACTGCTGCG.............................................................................................................................................................................................................2411.001.00--1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................GAAACAAGATTGACCTCGAAAACA................................................................2411.001.00-----------------------1.00------------------------------------------------------------------------
.............................................................................................................................CCCCGAGATCCTGAAAACTTCC.......................................................................................................2211.001.00-----------------------------------1.00------------------------------------------------------------
..........................................................................................................................................................................ATTGACCTCGAAAACAGACAA...........................................................2111.001.00-------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................TGACCTCGAAAACAGAC.............................................................1711.001.00--------------------------------------------1.00---------------------------------------------------
.......................TACAGAGGTGCAGACTGCTGCGTCTGG........................................................................................................................................................................................................271.000.00------------------------------------------------------1.00-----------------------------------------
.............................................TTCTGGTATTTGATGTGA...........................................................................................................................................................................................1811.001.00---1.00--------------------------------------------------------------------------------------------
...............................................CTGGTATTTGATGTGACTGCCCC....................................................................................................................................................................................2311.001.00-----------------------------------------------------1.00------------------------------------------
.........................................................................................................AGTTTCTCATCCAGGCCAG..............................................................................................................................1911.001.00---1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................ATTGACCTCGAAAACAGACAAGTG........................................................241.000.00-1.00----------------------------------------------------------------------------------------------
.............................................................................................................................CCCCGAGATCCTGAAAAC...........................................................................................................1811.001.00-----------------------------------1.00------------------------------------------------------------
................................GCAGACTGCTGCGTT...........................................................................................................................................................................................................1511.001.00--------------------------------------------------------------------------------1.00---------------
.......................................................................AACACATTCAAAACCCTAG................................................................................................................................................................1911.001.00-------------------------------------------------1.00----------------------------------------------
...............................................................................................TGGAGAGATGAGTTTCTCATCC.....................................................................................................................................2211.001.00------------------------------------------------------------1.00-----------------------------------
..................................AGACTGCTGCGTTCTGGTATTTGATGTGA...........................................................................................................................................................................................2911.001.00----------------------------------------------------1.00-------------------------------------------
.....TCTCTCGGTGTGGCCTTCTACAGAGGTGC........................................................................................................................................................................................................................2911.001.00--1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAGACAGGTG........................................................271.000.00-------------------1.00----------------------------------------------------------------------------
........................ACAGAGGTGCAGACTGCTGCGTTCCGT.......................................................................................................................................................................................................271.000.00------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................ACAAGATTGACCTCGAAAACA................................................................2111.001.00-----------------------------------------------------------------------1.00------------------------
.................................................................................................................................GAGATCCTGAAAACTTCCC......................................................................................................1911.001.00--------------------------------------------------------------1.00---------------------------------
...................................................................................................................................................................AAACAAGATTGACCTCGAAAACAGACAAGTGGC......................................................331.000.00------------1.00-----------------------------------------------------------------------------------
................................................................................AAAACCCTAGATAGCTGGAGAGATGAGT..............................................................................................................................................2811.001.00--------------------------1.00---------------------------------------------------------------------
.......................................................................................................................................................................AAGATTGACCTCGAAAACAGACAA...........................................................2411.001.00----------------------1.00-------------------------------------------------------------------------
.........................CAGAGGTGCAGACTGCTGCGTTC..........................................................................................................................................................................................................2311.001.00---1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................ATTTGTTGTGTTGGGAAACAAGATTGACCTCGAAAA..................................................................3611.001.00------------------------------------------------------------------------1.00-----------------------
...AGTCTCTCGGTGTGGCCTTCTACAGAGTTTC........................................................................................................................................................................................................................311.000.00----1.00-------------------------------------------------------------------------------------------
.........................................................................................GATAGCTGGAGAGATGAGTTTCTCAT.......................................................................................................................................2611.001.00---------------------------------------------------------1.00--------------------------------------
...............................................................................CAAAACCCTAGATAGCTGGAGAGATGAGT..............................................................................................................................................2911.001.00----1.00-------------------------------------------------------------------------------------------
................................GCAGACTGCTGCGTTCTGGTATTTGATGTGA...........................................................................................................................................................................................3111.001.00-----------------------------------------------------------1.00------------------------------------
.......................................................................................TAGATAGCTGGAGAGATGAGA..............................................................................................................................................2111.003.00-----------1.00------------------------------------------------------------------------------------
....GTCTCTCGGTGTGGCCTTCTACAGAGGT..........................................................................................................................................................................................................................2811.001.00-----------------------------------------1.00------------------------------------------------------
...................................................................................................................................................CATTTGTTGTGTTGGGAAACA..................................................................................2111.001.00-------1.00----------------------------------------------------------------------------------------
.........................................................................................GATAGCTGGAGAGATGAGTT.............................................................................................................................................2011.001.00---------------------------------------------------------------------1.00--------------------------
....................................................................................................................................................ATTTGTTGTGTTGGGAAACAAGATTGACC.........................................................................2911.001.00----1.00-------------------------------------------------------------------------------------------
.................................CAGACTGCTGCGTTCTGGTATTTGA................................................................................................................................................................................................2511.001.00---------------------------------------------------1.00--------------------------------------------
..........................AGAGGTGCAGACTGCTGCGTTCTG........................................................................................................................................................................................................2411.001.00-----------------1.00------------------------------------------------------------------------------
....................................................................................CCCTAGATAGCTGGAGAGAT..................................................................................................................................................2011.001.00-------------------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................ATTGACCTCGAAAACAGACAAGTGG.......................................................251.000.00--------------------------1.00---------------------------------------------------------------------
.....................TCTACAGAGGTGCAGACTGCTGCGTTC..........................................................................................................................................................................................................2711.001.00------1.00-----------------------------------------------------------------------------------------
....................TTCTACAGAGGTGCAGACTGCTGC..............................................................................................................................................................................................................2411.001.00--1.00---------------------------------------------------------------------------------------------
....................................................................................................................................ATCCTGAAAACTTCCCATT...................................................................................................1930.670.67-------------------------------------------------------------------------------------------0.330.33---
...................................................................CCCCAACACATTCAAAA......................................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------0.50---------
.................................................GGTATTTGATGTGACTGCCC.....................................................................................................................................................................................2020.500.500.50-----------------------------------------------------------------------------------------------
..........................................................................................ATAGCTGGAGAGATGAG...............................................................................................................................................1720.500.50-0.50----------------------------------------------------------------------------------------------
............................................................................................AGCTGGAGAGATGAGTTT............................................................................................................................................1820.500.50-------------------------------------------------------------------------------------0.50----------
............................................GTTCTGGTATTTGATGT.............................................................................................................................................................................................1720.500.50--------------------------------------0.50---------------------------------------------------------
...................................................................................................................................................CATTTGTTGTGTTGGGA......................................................................................1720.500.50------------------------------------------0.50-----------------------------------------------------
.........................................................................................GATAGCTGGAGAGATGAG...............................................................................................................................................1820.500.50------------------------------------------------------------------------------------0.50-----------
.....................................................................................................................................................TTTGTTGTGTTGGGAA.....................................................................................1670.430.43--------------------0.14---------------------------------------------------------------0.14----------0.14
.....................................CTGCTGCGTTCTGGT......................................................................................................................................................................................................1530.330.33----------------------------------------------------------------------------------------------0.33-
..............................................................................................................................................................TTGGGAAACAAGATTG............................................................................1630.330.33---------------------------------------------------------------------------------------------0.33--
...........................GAGGTGCAGACTGCT................................................................................................................................................................................................................1560.170.17-----------------------------------------0.17------------------------------------------------------
........................................................GATGTGACTGCCCCC...................................................................................................................................................................................1590.110.11-------------------------------------------0.11----------------------------------------------------

Antisense strand
TCCAGTCTCTCGGTGTGGCCTTCTACAGAGGTGCAGACTGCTGCGTTCTGGTATTTGATGTGACTGCCCCCAACACATTCAAAACCCTAGATAGCTGGAGAGATGAGTTTCTCATCCAGGCCAGTCCCCGAGATCCTGAAAACTTCCCATTTGTTGTGTTGGGAAACAAGATTGACCTCGAAAACAGACAAGTAAGTACCAACGATGATAGATATTGTCACAGACACCTGCTCCCCAGGGGCCTTGTGAA
.............................................................................................(((((...((((((...))))))....)))))...((((.((........((((((..........))))))........)).))))......................................................................
...................................................................................84...............................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................AAATGGGAAGTTTTCAGGA.................................................................................................. 1931.331.33----------------------------------------1.33-------------------------------------------------------
................................GCAGACTGCTGCGTTCTTGT...................................................................................................................................................................................................... 201.000.00----------------------------------1.00-------------------------------------------------------------
............................AGGTGCAGACTGCTGCGGGT.......................................................................................................................................................................................................... 201.000.00----------------------------------1.00-------------------------------------------------------------
..................................................................................................................TCGGGGACTGGCCTGGA....................................................................................................................... 1711.001.00-----------------------------------------------------------------1.00------------------------------
...........................GAGGTGCAGACTGCTGGGTT........................................................................................................................................................................................................... 201.000.00-------------------------------------------------------------------1.00----------------------------
...............................................................................................................................CCGAGATCCTGAAAACTC......................................................................................................... 181.000.00--------------------------------------------------------------------1.00---------------------------
............................AGGTGCAGACTGCTGTGA............................................................................................................................................................................................................ 181.000.00----------------------------------------------------------------1.00-------------------------------
..................................................................................................................CGGGGACTGGCCTGGA........................................................................................................................ 1620.500.50----------------------------------------------------------------------------------------0.50-------