ID: uc010hrt.2_intron_9_0_chr3_123675275_r
GENE: (2)
chr3:123675225-123675636-


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCTTCAGGAAGGCACACTGGACCTGCTAAATTAACAAATGGAAAGAAAGCGTAAGTACTTGAAGACGTTTACAACTTCAGATTTCAAGGAATTTTTCAGGTCTTTGGGCTGGATGACATGTCGTCTACCCCAGAAAATTAGGTAGGCCTCTACCATCACAAGCTCTGAGGAACAATTTTTCATGTCTACCCATGTTAATCATTTTAGTATTTAACAGTCTTTCTGATCTTCAGAATGTGTTTATAAATTCATCTTGTACATGGTTGGACAAGCTTTCTTGTCTTTGCTGGAAAGAAAATGACTACTTACTAATATATTTTGGGAAAAATATTTGTAAGAATATTAATAAGCTTGTTTTCCAGGACCTATTTAAGAAAAATACCACGTTTTAATGCAGATTCTGGCTATTCCA
........................................................................................................................................................................................................................................................................(((((((((((....((((((.((....)).))).)))..(((((....(((((((....)))))))..))))).........)))))))...))))...................................................
......................................................................................................................................................................................................................................................................263................................................................................................362................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................................................................................................................................................GAATATTAATAAGCTTGTTTTCCAGA.................................................26114.001.00--8.00----4.00----------------------1.00-----1.00------------------
..................................................................................................................................................................................................................................................................................................................................................AATATTAATAAGCTTGTTTTCCAG..................................................2416.006.00---------1.00----2.00-2.00---------1.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................AATATTAATAAGCTTGTTTTCC....................................................2216.006.00---6.00---------------------------------------------------
.................................................................................................................................CCAGAAAATTAGGTAGGCCTCT.....................................................................................................................................................................................................................................................................2213.003.002.00---1.00--------------------------------------------------
...................................AAATGGAAAGAAAGCGTAAGTA...................................................................................................................................................................................................................................................................................................................................................................2213.003.003.00------------------------------------------------------
...................................................................................................................................AGAAAATTAGGTAGGCCTCT.....................................................................................................................................................................................................................................................................2012.002.001.00---1.00--------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................ATATTAATAAGCTTGTTTTCCAGC.................................................242.000.00--------2.00----------------------------------------------
.............................................................................................................................................................................................................................TCTGATCTTCAGAATGTGTTT..........................................................................................................................................................................2112.002.002.00------------------------------------------------------
.......................................................................................GGAATTTTTCAGGTCTTTGGGCTGGAT..........................................................................................................................................................................................................................................................................................................2712.002.00-----------2.00-------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AATACCACGTTTTAATGCAGA..............2112.002.002.00------------------------------------------------------
..........................................................................................................................GTCTACCCCAGAAAACTAC...............................................................................................................................................................................................................................................................................192.000.00------------2.00------------------------------------------
........................GCTAAATTAACAAATGGAAAGAAAGC..........................................................................................................................................................................................................................................................................................................................................................................2612.002.00-----------------1.00----------------------------1.00--------
................................................GCGTAAGTACTTGAAGACGTTT......................................................................................................................................................................................................................................................................................................................................................2212.002.002.00------------------------------------------------------
.............................................................................................TTTCAGGTCTTTGGGCTGGAT..........................................................................................................................................................................................................................................................................................................2112.002.00-------------2.00-----------------------------------------
......................................................................................AGGAATTTTTCAGGTCTTTGGGCTGGATG.........................................................................................................................................................................................................................................................................................................2912.002.00------2.00------------------------------------------------
..........................................................................................................................GTCTACCCCAGAAAACA.................................................................................................................................................................................................................................................................................171.000.00------------------------1.00------------------------------
...................................................TAAGTACTTGAAGACGTTT......................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00--------------------------------------------------
..................................................................................................................................CAGAAAATTAGGTAGGCCTCT.....................................................................................................................................................................................................................................................................2111.001.00---------------------1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................ATACCACGTTTTAATGCAGATCCT..........241.000.00---------------------------------------------1.00---------
...............................................................................................................................................................................................................................................................................................................................................AAGAATATTAATAAGCTTGTTTTCCAGA.................................................281.000.00----------------------------1.00--------------------------
.......................................................................................................................................................ACCATCACAAGCTCTGAGGAAC...............................................................................................................................................................................................................................................2211.001.00----------------------------------1.00--------------------
...................................AAATGGAAAGAAAGCGACC......................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00----
..........................................................................................................................GTCTACCCCAGAAAACT.................................................................................................................................................................................................................................................................................171.000.00------------------------------------------1.00------------
..........................................................................................................................GTCTACCCCAGAAAATTAG...............................................................................................................................................................................................................................................................................1911.001.00--------------------------------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................................TTTTCCAGGACCTATTTAAGAAAAATA...............................2711.001.00---------------------------------------------------1.00---
...................................................................................................................................................................................................................................................................................................................................................ATATTAATAAGCTTGTTTTCCCGC.................................................241.000.00--------1.00----------------------------------------------
.....AGGAAGGCACACTGGACC.....................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------1.00---------------------
...........................................................................................................................................................................................................................................................................ACAAGCTTTCTTGTCTTTGCTGGAAAGAAAATGA...............................................................................................................3411.001.00-----------------------------------------------1.00-------
...................................................................TTTACAACTTCAGATTTCAAGGAATTCCAG...........................................................................................................................................................................................................................................................................................................................301.000.00------------------1.00------------------------------------
..TTCAGGAAGGCACACTGGACCCGC..................................................................................................................................................................................................................................................................................................................................................................................................241.000.00------1.00------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................GAATATTAATAAGCTTGTTTTCCAGG.................................................2611.001.00---------------1.00---------------------------------------
......GGAAGGCACACTGGACCTGCT.................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----1.00--------------------------------------------------
..........................................................................................................................................................ATCACAAGCTCTGAGGAACA..............................................................................................................................................................................................................................................2011.001.001.00------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................TATTAATAAGCTTGTTTTCCAG..................................................2211.001.00---------------1.00---------------------------------------
........................................................................................................................TCGTCTACCCCAGAAAATTAGGCAG...........................................................................................................................................................................................................................................................................251.000.00------------------1.00------------------------------------
..................................................................................................................................................................................................................................................ATAAATTCATCTTGTACATGGTTGG.................................................................................................................................................2511.001.00---------------------------1.00---------------------------
...........................................................................................................................................................TCACAAGCTCTGAGGAACAATTT..........................................................................................................................................................................................................................................2311.001.00------------------------------------------------1.00------
........................GCTAAATTAACAAATGGAAAGAAAGA..........................................................................................................................................................................................................................................................................................................................................................................261.000.00-----------------1.00-------------------------------------
.................................................................................................AGGTCTTTGGGCTGGATGAC.......................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00----------
............................................................................................................................................................................................................................................................CTTGTACATGGTTGGACAA.............................................................................................................................................1911.001.00--------------------------------------1.00----------------
............................................................................................................................................................................................................................................................................................................................................................................CCTATTTAAGAAAAATACCACGTTTTAATG..................3011.001.00-----------------------------------------1.00-------------
..................................................................................................................................................................................................................................................................................................................................................AATATTAATAAGCTTGTTTTCCAT..................................................241.000.00---------1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................TTGGGAAAAATATTTGTAAGAAT.......................................................................2311.001.00--------------------1.00----------------------------------
.......................................................................................GGAATTTTTCAGGTCTTTGGGCTGG............................................................................................................................................................................................................................................................................................................2511.001.00----------1.00--------------------------------------------
......................................................................................AGGAATTTTTCAGGTCTTTGGGCTGGACGAC.......................................................................................................................................................................................................................................................................................................311.000.00------1.00------------------------------------------------
.....AGGAAGGCACACTGGACCTG...................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------1.00-------------------
........................................................................................................................................................CCATCACAAGCTCTGAGGAACA..............................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00-----------
...............................................................................................................................................AGGCCTCTACCATCACAAGCTCTGA....................................................................................................................................................................................................................................................2511.001.00-------------------1.00-----------------------------------
.................................................................................................................................................................................................................................................................................................................................................GAATATTAATAAGCTTGG.........................................................181.000.00---------1.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................GAATATTAATAAGCTTGTTTTCCAG..................................................2511.001.00-------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................................ATATTTGTAAGAATATTTCGT................................................................211.000.00-------------------------------------------------1.00-----
..............................................................................................................................................................CAAGCTCTGAGGAACAATTTT.........................................................................................................................................................................................................................................2111.001.001.00------------------------------------------------------
........................................................................................................................................................................................................................GTCTTTCTGATCTTCAGA..................................................................................................................................................................................1811.001.00--------1.00----------------------------------------------
................................................................................................................................................................AGCTCTGAGGAACAATTTTTCATGTC..................................................................................................................................................................................................................................2611.001.00----1.00--------------------------------------------------
...........................................................................................................................................................................................................................................................................................TTGCTGGAAAGAAAATGAC..............................................................................................................1920.500.50-----------------------------------------------------0.50-
.......................................................................................................................................AATTAGGTAGGCCTCTA....................................................................................................................................................................................................................................................................1720.500.50----------------------------------------------------0.50--
.............................ATTAACAAATGGAAAGA..............................................................................................................................................................................................................................................................................................................................................................................1750.200.20------------------------------------------------------0.20

Antisense strand
TCTTCAGGAAGGCACACTGGACCTGCTAAATTAACAAATGGAAAGAAAGCGTAAGTACTTGAAGACGTTTACAACTTCAGATTTCAAGGAATTTTTCAGGTCTTTGGGCTGGATGACATGTCGTCTACCCCAGAAAATTAGGTAGGCCTCTACCATCACAAGCTCTGAGGAACAATTTTTCATGTCTACCCATGTTAATCATTTTAGTATTTAACAGTCTTTCTGATCTTCAGAATGTGTTTATAAATTCATCTTGTACATGGTTGGACAAGCTTTCTTGTCTTTGCTGGAAAGAAAATGACTACTTACTAATATATTTTGGGAAAAATATTTGTAAGAATATTAATAAGCTTGTTTTCCAGGACCTATTTAAGAAAAATACCACGTTTTAATGCAGATTCTGGCTATTCCA
........................................................................................................................................................................................................................................................................(((((((((((....((((((.((....)).))).)))..(((((....(((((((....)))))))..))))).........)))))))...))))...................................................
......................................................................................................................................................................................................................................................................263................................................................................................362................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................................................................................CTGATCTTCAGAATGGGGT........................................................................................................................................................................... 1912.000.00-8.00---4.00-------------------------------------------------
..................................................................................TCCAGCCCAAAGACCTGAAAAATTCCTTGAA........................................................................................................................................................................................................................................................................................................... 3112.002.00----------1.00-----------------------------1.00--------------
.........................................................................................................................................................................................................................TCTTTCTGATCTTCAGGAA................................................................................................................................................................................ 191.000.00----------------------1.00--------------------------------
.......................................................................................................................GTCGTCTACCCCAGACTG................................................................................................................................................................................................................................................................................... 181.000.00-------------------------------1.00-----------------------
...........................................................................................TTTTTCAGGTCTTTGGGCTCTTC.......................................................................................................................................................................................................................................................................................................... 231.000.00-------------------------1.00-----------------------------
................................................................................................................................................GGCCTCTACCATCACAGG.......................................................................................................................................................................................................................................................... 181.000.00-----------------------------1.00-------------------------
.............................................................................TGAAAAATTCCTTGAAATCTG.......................................................................................................................................................................................................................................................................................................................... 2111.001.00-----------------------1.00-------------------------------
..............................................................................................................................................................................................................................CTGATCTTCAGAATGGGGA........................................................................................................................................................................... 191.000.00-1.00-----------------------------------------------------