ID: uc010hoh.2_intron_8_0_chr3_78685259_r.5p
GENE: ROBO1(14)
chr3:78688694-78688943-


(1)
B-CELL
(1)
BRAIN
(11)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(5)
LIVER
(1)
OTHER
(2)
SKIN
(2)
UTERUS

Sense strand
GGCAGGCAATGGAAACAGCGACAGCAACCTCACTACCTACAGTCGCCCAGGTTAGGGACACAGAGAGAGCCTGATATGTATAAGCTTTTTAAGGAACTAGCCAGAAGATCTTTTCTTTCCCTCTCCCTACATGGGAAAGATAAAATTTGACCCGTATTTTATCCAATGCTGACTATTGTTTAGCAAAATAGCCTGATTTAAGTATTTTCTCCATCCCTTAACCTCCATACTTTGCTAAAGTCCACCAAAA
.........................................................................................................((((.((.((((((((...........)))))))).)).))))......................................................................................................
........................................................................................................105...................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormDRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR343337SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM532881(GSM532881)
G696N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
........................................................................................................................................AAGATAAAATTTGAC...................................................................................................15037.0037.0022.008.007.00----------------------------
.......................................................................................................................................AAAGATAAAATTTGAG...................................................................................................1608.002.002.004.002.00----------------------------
.......................................................................................................................................AAAGATAAAATTTGACATCT...............................................................................................205.000.00-----2.00----1.00-------1.00--1.00---------
.......................................................................................................................................AAAGATAAAATTTGAT...................................................................................................1603.002.002.001.00-----------------------------
..........................................................................................................................................................................................................TATTTTCTCCATCCCTTAACCTCCATACTCTG................323.000.00---3.00---------------------------
.......................................................................................................................................AAAGATAAAATTTGACATC................................................................................................192.000.00----1.00--------1.00-----------------
.......................................................................................................................................AAAGATAAAATTTGAGATC................................................................................................1902.002.00-------1.00------------1.00----------
.......................................................................................................................................AAAGATAAAATTTGA....................................................................................................1502.002.00-1.00---------------------1.00-------
............AAACAGCGACAGCAACCTCACTACCTA...................................................................................................................................................................................................................2711.001.00-------------------------1.00-----
.........................................................................................................AGATCTTTTCTTTCCG.................................................................................................................................161.000.00---------------------------1.00---
.....GCAATGGAAACAGCGACAGC.................................................................................................................................................................................................................................2011.001.00--------------------------1.00----
.......................................................................................................................................AAAGATAAAATTTGATGTG................................................................................................1901.002.00----1.00--------------------------
.............AACAGCGACAGCAACCTCA..........................................................................................................................................................................................................................1911.001.00-----------1.00-------------------
........................................................................................................................................AAGATAAAATTTGACATC................................................................................................1801.0037.00-------1.00-----------------------
..........................ACCTCACTACCTACAAG...............................................................................................................................................................................................................171.000.00-------------------1.00-----------
.............................................CCCAGGTTAGGGACACAGAGAGAGCCG..................................................................................................................................................................................271.000.00------1.00------------------------
..........................................................................................................................................................................................................TATTTTCTCCATCCCTTAACCTCCATACTTTG................3211.001.00---------------1.00---------------
.....................CAGCAACCTCACTACCTACAGTCGCCCAG........................................................................................................................................................................................................2911.001.00------------------------1.00------
............AAACAGCGACAGCAACCTCACTACCC....................................................................................................................................................................................................................261.000.00------1.00------------------------
.......................................................................................................................................AAAGATAAAATTTGACGT.................................................................................................181.000.00------------1.00------------------
.............................................................................................................CTTTTCTTTCCCTCTAAG...........................................................................................................................181.000.00---------1.00---------------------
........................CAACCTCACTACCTAC..................................................................................................................................................................................................................1620.500.50-----------------------------0.50-
........................CAACCTCACTACCTA...................................................................................................................................................................................................................1530.330.33----------------------------0.33--

Antisense strand
GGCAGGCAATGGAAACAGCGACAGCAACCTCACTACCTACAGTCGCCCAGGTTAGGGACACAGAGAGAGCCTGATATGTATAAGCTTTTTAAGGAACTAGCCAGAAGATCTTTTCTTTCCCTCTCCCTACATGGGAAAGATAAAATTTGACCCGTATTTTATCCAATGCTGACTATTGTTTAGCAAAATAGCCTGATTTAAGTATTTTCTCCATCCCTTAACCTCCATACTTTGCTAAAGTCCACCAAAA
.........................................................................................................((((.((.((((((((...........)))))))).)).))))......................................................................................................
........................................................................................................105...................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormDRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR343337SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM532881(GSM532881)
G696N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
......................................................................................................................................GAAAGATAAAATTTGAACT................................................................................................. 192.000.00--------2.00----------------------
.................GCGACAGCAACCTCACATC...................................................................................................................................................................................................................... 191.000.00--------------1.00----------------
........................................................................................................................................................................................................AGGGATGGAGAAAATACT................................ 1821.001.00----------------1.00--------------
...........GAAACAGCGACAGCATAGG............................................................................................................................................................................................................................ 191.000.00-----------------1.00-------------
.....................................TACAGTCGCCCAGGTTAGTGG................................................................................................................................................................................................ 211.000.00----------------------1.00--------
...............................................CTGTGTCCCTAACCTG........................................................................................................................................................................................... 1650.200.20----------------------------0.20--
.............................................TGTCCCTAACCTGGG.............................................................................................................................................................................................. 1560.170.17------------------------------0.17