ID: uc010hoh.2_intron_3_0_chr3_78663951_r.3p
GENE: ROBO1(19)
chr3:78663901-78664150-


(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(16)
CELL-LINE
(1)
HELA
(1)
OTHER
(2)
SKIN

Sense strand
GCTTTTGGGGTATTTTTTCCAGTAAATAGCAGAGTGACAACAAGCCTGTTATTTGCTGGAAGAGTTTGTTTAAGCTTTTTTTGTTGCTTTTCAGAAAAATTAAAGCTGTTTCTGGTTTTAATGTTTTCTTTTTGTTGTTCCTGTTGTAATTAAAATTCACTGATGAGTTTGGCTTGGATTTTTTTTTTTTTTCTCCTTAGGCCGTCGACATTTTCATGCGTCTCAGTGCCCTAGGCCCACAAGTCCCGTG
..................................................................................................(((((((((......)))))))))..............................(((((((....)))))))((((.(((...............)))...))))...............................................
................................................................................................97............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189786SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343336SRR029128(GSM416757)
H520. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343335SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................AAAGCTGTTTCTGGTAATA..................................................................................................................................1925.000.00--11.004.00--4.00--1.00-3.00----2.00------------
.....................................................................................................AAAGCTGTTTCTGGTAAT...................................................................................................................................186.000.00--1.002.00--1.00--2.00-------------------
.........................................................................................................................................................................TGGCTTGGATTTTTTTTTTTTTTTTTG......................................................275.000.003.002.00---------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCTCCTTAAATG...............................................254.000.00----------1.00-1.00-----1.00------1.00---
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTAAATG...............................................243.000.00----------2.00-1.00----------------
........................................................................................................................................................................TTGGCTTGGATTTTTTTTTTTTTTTTT.......................................................272.000.00-2.00---------------------------
...................................................................................................TTAAAGCTGTTTCTGAAA.....................................................................................................................................182.000.00---------------2.00-------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCTTTG...................................................222.000.00--------2.00--------------------
..............................................................................................................................................................................TGGATTTTTTTTTTTTTTCTGGTG....................................................242.000.001.001.00---------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCTCCTTAAATT...............................................231.000.00-----------------------1.00-----
...........................................................................................................................................................................GCTTGGATTTTTTTTTTTTTTTTCG......................................................251.000.00----1.00------------------------
...TTTGGGGTATTTTTTCCTGAG..................................................................................................................................................................................................................................211.000.00-1.00---------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCTCCTTAGAG................................................241.000.00-1.00---------------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCGATG...................................................221.000.001.00----------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTCATG.................................................221.000.00----1.00------------------------
.........................................................................................................................................................................TGGCTTGGATTTTTTTTTTTTTTTG........................................................251.000.001.00----------------------------
............................................................................................................................................................................CTTGGATTTTTTTTTTTCTGC.........................................................211.000.001.00----------------------------
.............................................................................................................................................................................TTGGATTTTTTTTTTTTTTCTAA......................................................231.000.001.00----------------------------
.........................................................................................................................................................................TGGCTTGGATTTTTTTTTTTTTTTTTT......................................................271.000.001.00----------------------------
..............................................................................................................................................................................TGGATTTTTTTTTTTTTTCTTGTC....................................................241.000.00-1.00---------------------------
.................................................................................................................................................................................................................ATTTTCATGCGTCTCAGTG......................1911.001.00-------------1.00---------------
..............................................................................................AAAAATTAAAGCTGTCGGG.........................................................................................................................................191.000.00--------------------------1.00--
..............................................................................................................................................................................TGGATTTTTTTTTTTTTTCTGCC.....................................................231.000.001.00----------------------------
.....................................................................................................AAAGCTGTTTCTGGTACT...................................................................................................................................181.000.00---1.00-------------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCGC.....................................................201.000.001.00----------------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCTGGG...................................................221.000.00-1.00---------------------------
.......................................................................................................................................................................TTTGGCTTGGATTTTTTTTTTAT............................................................231.000.00-1.00---------------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCCTTTG..................................................231.000.00-1.00---------------------------
........................................................................................................................................................................TTGGCTTGGATTTTTTTTTTTTTTTT........................................................261.000.001.00----------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTATAG................................................231.000.00--------1.00--------------------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCCTGCAG.................................................241.000.00-1.00---------------------------
......................................................................TAAGCTTTTTTTGTTCGC..................................................................................................................................................................181.000.00----1.00------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCTCCTTAATTG...............................................231.000.00-----------------1.00-----------
............................................................................................................................................................................CTTGGATTTTTTTTTTTTTAACT.......................................................231.000.001.00----------------------------
.....................................................................................................................................................................................TTTTTTTTTTTCTCCTTACTGG...............................................221.000.00--------1.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTCTCCTTAGCACC..............................................231.000.001.00----------------------------
.............................................................................................................................................................................TTGGATTTTTTTTTTTTGGTG........................................................211.000.001.00----------------------------
...TTTGGGGTATTTTTTGTAC....................................................................................................................................................................................................................................191.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCTCCTGGCG.................................................231.000.001.00----------------------------
..............................................................................................................................................................................TGGATTTTTTTTTTTTGTGG........................................................201.000.00-1.00---------------------------
.....TGGGGTATTTTTTCCG.....................................................................................................................................................................................................................................161.000.00----1.00------------------------
......GGGGTATTTTTTCCAACC..................................................................................................................................................................................................................................181.000.00----1.00------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTAAATT...............................................241.000.00-----------------1.00-----------
.................................................................................................................................................................................ATTTTTTTTTTTTTTCTCCTGAGG.................................................241.000.00----1.00------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTGGTC.................................................221.000.001.00----------------------------
............................................................................................................................................................................CTTGGATTTTTTTTTTCTGC..........................................................201.000.001.00----------------------------
..............................................................................................................................................................................TGGATTTTTTTTTTTTTTCTGGGC....................................................241.000.001.00----------------------------
......................................AACAAGCCTGTTATTTAAAG................................................................................................................................................................................................201.000.00----------------------1.00------
.........................................................................................................................................................................TGGCTTGGATTTTTTTTTTTTTCTG........................................................251.000.00-1.00---------------------------
.............................................................................................................................................................................TTGGATTTTTTTTTTTTTTCGGGC.....................................................241.000.00-1.00---------------------------
..............................................................................................................................................................................TGGATTTTTTTTTTTTTTCTTCTG....................................................241.000.00-1.00---------------------------
.............................................................................TTTTTGTTGCTTTTCAGA...........................................................................................................................................................1830.330.33---------------------------0.33-
.....................................................................................................................................................................................................................................CCTAGGCCCACAAGT......1540.250.25----------------------------0.25
........................................................................................................................................GTTCCTGTTGTAATT...................................................................................................1590.110.11------------0.11----------------

Antisense strand
GCTTTTGGGGTATTTTTTCCAGTAAATAGCAGAGTGACAACAAGCCTGTTATTTGCTGGAAGAGTTTGTTTAAGCTTTTTTTGTTGCTTTTCAGAAAAATTAAAGCTGTTTCTGGTTTTAATGTTTTCTTTTTGTTGTTCCTGTTGTAATTAAAATTCACTGATGAGTTTGGCTTGGATTTTTTTTTTTTTTCTCCTTAGGCCGTCGACATTTTCATGCGTCTCAGTGCCCTAGGCCCACAAGTCCCGTG
..................................................................................................(((((((((......)))))))))..............................(((((((....)))))))((((.(((...............)))...))))...............................................
................................................................................................97............................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189786SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343336SRR029128(GSM416757)
H520. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343335SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................GTTTGGCTTGGATTTAAA.................................................................. 182.000.00-------2.00---------------------
..................................................................................................................................................................................GGAGAAAAAAAAAAAAAA...................................................... 1802.002.00-------------1.00------1.00--------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTGT.................................................. 212.000.00-----2.00-----------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTTGT................................................. 221.000.00-----1.00-----------------------
.....................................................................................................................................................................................TTTTTTTTTTTCTCCTTATG................................................. 201.000.00-----1.00-----------------------
...............................................................................................................................................................................GGATTTTTTTTTTTTTTCTCGT..................................................... 221.000.00--------------1.00--------------
....................................................................................................................................................................................TTTTTTTTTTTTCTCCTCCG.................................................. 201.000.00-----1.00-----------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCTCCTTATAGT............................................... 241.000.00--------------1.00--------------
......................................................................................................................................................................GTTTGGCTTGGATTTCTA.................................................................. 181.000.00-------1.00---------------------
................................................................................................................................................................................GGAGAAAAAAAAAAAAAATC...................................................... 2061.001.00------------------------1.00----
......................................................................................................................................................................GTTTGGCTTGGATTTCGC.................................................................. 181.000.00-------1.00---------------------
.................................................................................................................................................................................AAGGAGAAAAAAAAAAAAAAT.................................................... 2151.001.00-----1.00-----------------------
......................................................................................................................................................................................................................................CTAGGCCCACAAGTCCCCA. 191.000.00---------------------1.00-------
..................................................................................................................................TTTGTTGTTCCTGTTGTG...................................................................................................... 181.000.00-------------------1.00---------
.................................................................................................................................................................................AGGAGAAAAAAAAAAAAAAT..................................................... 2090.780.78-----0.78-----------------------