ID: uc010hlw.1_intron_2_0_chr3_51862824_f
GENE: (3)
chr3:51862774-51863339+


(13)
B-CELL 		(14)
BRAIN 		(29)
BREAST 		(30)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(13)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTGATAGAATTCAGCTGTGGATCCTTCTTGTCCTGCGCTTTATTTTGTTGGTAAGCTATTTACTACTAATTCAATTTCAGAGCTCATTATTAGTCTGTTCAGGGAATCAATTTCTTCCTGCTTCAGTCTCGGGAGGGTGTATGTGTCCAGGAATTTATCCATCTCTTCTAGGTTTTCTAGTTTGTGTGCATAGTCTCTGATGGTTATTTTTATTTCTGTGGGGTCCGTGGTAACATCCCCTTTGTCATTTCTAATTGTAAATGTCTTATAAAAACATTTACATTAAATGTTAAAACACCTTAATGTAAAAGGTAGACCAGAATCTAATAGAAAAATCTATGATCCTGGATGGAAAAGCACTTTATTAGAAAACTACAAAAGCAGAATTGTAAAGGGGCAATGGATTTGAGCATATCAAAAATTAAAGATAACTGTGGAAGGAAAGGCAACCATGAAAAAAGTTAACAGGCAGATGACAATCTGAGAAATGATATTTGCACAATTTTTCCTCAACAGAGAGTTGCCCAAGGAAGTCAACAGGAGAGCCAGGTATTTTCTCTTTATCC
.........................................................................................................................................................................................................................................(((((((((((.((.((((..(((((....(((.(((((....((((((((((.(((....)))..)))))))))).......((((.(((..(((((....)))))))).))))............))))).)))....)))))....)))).))))))))))..)))....................................................................................................................................................................
......................................................................................................................................................................................................................................231..........................................................................................................................................................................404................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTAT......................................................................................................................................................................21277.0010.507.003.003.003.503.500.504.000.500.502.501.50-1.00-0.501.50-1.502.002.00-2.001.501.002.00--1.501.001.00--1.501.501.001.00-0.50-1.000.501.50---0.50--1.001.000.50-----1.00-1.00-0.501.00-----1.00-----0.50---0.50-0.50---0.500.500.50-0.50-0.500.50-0.500.50---0.500.500.500.500.500.500.500.50-0.500.50--0.50-0.500.500.500.50
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGG..........................................................................................................................................................................17210.5010.50-----3.00-2.50-----3.00--2.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTA.......................................................................................................................................................................2029.5010.500.50--0.500.50--0.50--0.500.50-0.50---0.50--0.50------0.500.500.50----------0.50-0.50------------0.50--------------------------0.50-----0.50----------------0.50--0.50-------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGATAT......................................................................................................................................................................2127.5010.501.503.00--------1.00-----------------0.50-----------------------------------------1.00---------------0.50-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGC.........................................................................................................................................................................1826.0010.501.00----0.50-1.00------------1.00----------------0.50-------0.50----0.50------------------------------0.50--------------0.50-------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTATG.....................................................................................................................................................................2215.002.001.00---1.00----------------------------------------------1.001.00---------1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCGAT......................................................................................................................................................................2124.5010.50---1.00--------1.00--0.50-------0.50-----0.50---0.50------------------------------0.50---------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTAT......................................................................................................................................................................2114.002.00-1.00----------1.00---------1.001.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................TCCCCTTTGTCATTTCGCCT.......................................................................................................................................................................................................................................................................................................................203.000.00--------------3.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAGAATTGTATAGT...........................................................................................................................................................................203.000.00--------3.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTGT......................................................................................................................................................................2122.5010.50----0.50----------1.00--------------------------------------------0.50-----------------0.50-------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTAA......................................................................................................................................................................2122.5010.500.50-0.50----------------------------------------------------------------------0.50------0.50----------------------------0.50------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCT........................................................................................................................................................................1922.0010.50------------------------------------0.500.50------0.50-------------------0.50---------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGG.........................................................................................................................................................................1812.002.00----------------1.00-------------------------------------------------------1.00-------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGGATGGAAAAGCACGAAT..........................................................................................................................................................................................................192.000.00-------------------------------2.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTCT......................................................................................................................................................................2122.0010.50-1.00------------------------------------------0.50--------------------------------------------------0.50--------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGTTAT......................................................................................................................................................................2121.5010.501.50-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGATA.......................................................................................................................................................................2021.5010.50-0.50------------------------------------0.50--------------------------------0.50--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTCTA.....................................................................................................................................................................2211.002.00-------------------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................CAGAATTGTAAAGGGATAT......................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................GCAGAATTGTAAAGGGCTAT......................................................................................................................................................................201.000.00-1.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTG.......................................................................................................................................................................2021.0010.50--------------------------------------0.50----------------------------------------------------0.50------------------------
...........................................................................................................................................................................................................................................TCCCCTTTGTCATTTCGCCA.......................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGCA.........................................................................................................................................................................181.000.00--------1.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................AACTACAAAAGCAGAAAA..................................................................................................................................................................................181.000.00------------------------------------------------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTTT......................................................................................................................................................................2111.002.00------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGCAT......................................................................................................................................................................211.000.00------------------------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTATA.....................................................................................................................................................................2211.002.00----------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGATAA......................................................................................................................................................................2121.0010.50--0.50--------------------------------------------------------------------0.50--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGT........................................................................................................................................................................1911.002.00----------------------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGCGCG........................................................................................................................................................................191.000.00------------------------------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGTCC........................................................................................................................................................................191.000.00------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGTGT........................................................................................................................................................................191.000.00--------------------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGAATTGTAAAGGGCTAT......................................................................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGCTC........................................................................................................................................................................191.000.00----------------------------------1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGCCTA.......................................................................................................................................................................201.000.00-----------------1.00--------------------------------------------------------------------------------------------------
...........CAGCTGTGGATCCTTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------1.00----------------------------------------------
............................................................................................................................................................................................................................................CCCCTTTGTCATTTCGCCT.......................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................CAGAATTGTAAAGGGCTAT......................................................................................................................................................................191.000.00------------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTATT.....................................................................................................................................................................2211.002.00--------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................TCCCCTTTGTCATTTCGCTT.......................................................................................................................................................................................................................................................................................................................201.000.00------------------------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................GTGTATGTGTCCAGGAATTTTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-----------------------------------------------------------1.00--------------------------------------------------------
........................................TATTTTGTTGGTAAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00--------------------------------------------------------------------
.........................................................................................................ATCAATTTCTTCCTGTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------1.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTT.......................................................................................................................................................................2021.0010.50------------------------0.50---------------------------------------------------0.50---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGTC.........................................................................................................................................................................181.000.00-----1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAAGGGGCAATAT...................................................................................................................................................................181.000.00-----------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGTCT........................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTACA.....................................................................................................................................................................2211.002.00--1.00-----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TGTCCAGGAATTTATCCATCTCTTCTAGGTTTA......................................................................................................................................................................................................................................................................................................................................................................................................331.000.00---------------------------------------------------------------------------1.00----------------------------------------
.......................................................................................................................................................................................................ATGGTTATTTTTATTTCTGTGGGGGC.....................................................................................................................................................................................................................................................................................................................................................261.000.00---------------------------------------------------------------1.00----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGTGT......................................................................................................................................................................2111.002.00---------1.00----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGGA........................................................................................................................................................................1911.002.00---------------------------------------------------------1.00----------------------------------------------------------
......................................................................TCAATTTCAGAGCTCATTACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGAATA.......................................................................................................................................................................201.000.00-------------------------------------------1.00------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGTCTA.......................................................................................................................................................................201.000.00---1.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGATT.......................................................................................................................................................................2021.0010.50-0.50------------------------------------0.50-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGATG.......................................................................................................................................................................2020.5010.500.50-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCA........................................................................................................................................................................1920.5010.50---------------------------------------0.50----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCCAA......................................................................................................................................................................2120.5010.50---------------0.50----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGAGAC......................................................................................................................................................................2120.5010.50--0.50-----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGT.........................................................................................................................................................................1820.5010.500.50-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGAGAT......................................................................................................................................................................2120.5010.50---------0.50----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGACAT......................................................................................................................................................................2120.5010.50-0.50------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTTT......................................................................................................................................................................2120.5010.50--------------------------------0.50-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTGA......................................................................................................................................................................2120.5010.50---------0.50----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGAAAT......................................................................................................................................................................2120.5010.50----------0.50---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCCAT......................................................................................................................................................................2120.5010.50----------------------------------------0.50---------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCG........................................................................................................................................................................1920.5010.50-------------------------------------------------------0.50------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGAGGT......................................................................................................................................................................2120.5010.50-----------------------------------0.50--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGTCA.......................................................................................................................................................................2020.5010.50-----------0.50--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGTTA.......................................................................................................................................................................2020.5010.50--0.50-----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTC.......................................................................................................................................................................2020.5010.50----------------------------------------------------------------------------------------------0.50---------------------
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAGAATTGTAAAGGGCTAC......................................................................................................................................................................2120.5010.50---------------------0.50----------------------------------------------------------------------------------------------

Antisense strand
CTGATAGAATTCAGCTGTGGATCCTTCTTGTCCTGCGCTTTATTTTGTTGGTAAGCTATTTACTACTAATTCAATTTCAGAGCTCATTATTAGTCTGTTCAGGGAATCAATTTCTTCCTGCTTCAGTCTCGGGAGGGTGTATGTGTCCAGGAATTTATCCATCTCTTCTAGGTTTTCTAGTTTGTGTGCATAGTCTCTGATGGTTATTTTTATTTCTGTGGGGTCCGTGGTAACATCCCCTTTGTCATTTCTAATTGTAAATGTCTTATAAAAACATTTACATTAAATGTTAAAACACCTTAATGTAAAAGGTAGACCAGAATCTAATAGAAAAATCTATGATCCTGGATGGAAAAGCACTTTATTAGAAAACTACAAAAGCAGAATTGTAAAGGGGCAATGGATTTGAGCATATCAAAAATTAAAGATAACTGTGGAAGGAAAGGCAACCATGAAAAAAGTTAACAGGCAGATGACAATCTGAGAAATGATATTTGCACAATTTTTCCTCAACAGAGAGTTGCCCAAGGAAGTCAACAGGAGAGCCAGGTATTTTCTCTTTATCC
.........................................................................................................................................................................................................................................(((((((((((.((.((((..(((((....(((.(((((....((((((((((.(((....)))..)))))))))).......((((.(((..(((((....)))))))).))))............))))).)))....)))))....)))).))))))))))..)))....................................................................................................................................................................
......................................................................................................................................................................................................................................231..........................................................................................................................................................................404................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577588(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATATTTGCACAATTG............................................................. 191.000.00-----------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGGGCAATGGG.................................................................................................................................................................. 161.000.00-------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGAATTGTAAAAAT.......................................................................................................................................................................... 191.000.00-------------------------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAAAAAAGTTAACCATT................................................................................................ 211.000.00-----------------------------------------------------------------1.00--------------------------------------------------
.........................TCTTGTCCTGCGCTTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAGAGTTGCCCATC..................................... 201.000.00-----------------------------------------------------1.00--------------------------------------------------------------
..................................................................TAATTCAATTTCAGACCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00------------------------------------------------------1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTGTTAACTTTTTT.............................................................................................. 1820.500.50---------------------------------------------------------------------------------------------------------------0.50----