ID: uc010hkz.2_intron_1_0_chr3_49828902_r
GENE: (17)
chr3:49828852-49829196-


(3)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(1)
OTHER 		(1)
RRP40.ip 		(1)
TESTES

Sense strand
AGGCACCGAAGATGGAGATGTCCCAGGCACCCAGCAGTGTCATGAGTCTGGTATGTCAGCTCACCATCTCAAGTAGTGGACACCAAGGGTGCTTCAGAGTACTCCCCTGCCCCCTCCAAGCCTTTTTTCCCATGCCCCTTTTCCGATGAATGGGTATCCTTGTGGAAATGCCCACACTAGCACCATCAGAATGGAGGAGGCAGGTGGGCTTCTGGCCCCCTAGGGGCAGGCCTTCATCTGCTCCCCTGTGGGCAGGGTTCAATTCATTGCATCTTTTTTTTTTTTCCCTCAGCAGCATTTTGATGGCAGAGCACAGGACTCCCGTGAGTCCCCCTCTTCCTAAGC
...........................................................................................................................................................................(((((......((((....)))).((..(((((((((((....(((((...))))).))))..)))))))..)).)))))((((((............................))))..))....................................................
...........................................................................................................................................................................172........................................................................................................................295................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCTTG....................................................22889.000.00407.00327.0078.0070.002.00-5.00--------------
................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTCCCTCTTG....................................................21139.000.0062.0063.006.008.00-----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCTTA....................................................2212.000.006.005.001.00------------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCTGG....................................................2211.000.007.002.00-2.00-----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCCTG....................................................229.000.004.00-2.002.00--1.00--------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTGAGC........................................................246.000.00----4.002.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTGAGC..........................................................224.000.00----4.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTGAGC.........................................................234.000.00----4.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTTG........................................................2414.001.00----2.00-2.00--------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTTTT.......................................................2513.001.00----2.001.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTGAGC...........................................................212.000.00----2.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTTT........................................................2412.001.00-----2.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTGAG............................................................202.000.00----1.00-1.00--------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTCTG..........................................................222.000.00-----2.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTCT...........................................................212.000.00----2.00----------------
...........................................................................................................................................................................................................................................................................TGCATCTTTTTTTTTTTTGAGC........................................................222.000.00----2.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTCTTG..........................................................222.000.00----2.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTC.............................................................192.000.00----1.001.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTCT............................................................202.000.00----1.001.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTGAGC............................................................202.000.00----2.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTTTG.......................................................2512.001.00----1.001.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTCTC..........................................................222.000.00-----1.001.00--------------
................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTCCCTCCTAG...................................................222.000.00--1.00---1.00--------------
................................................................................................................................................................................CTAGCACCATCAGAAATCG......................................................................................................................................................192.000.00--------1.001.00-----------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTGAG.........................................................232.000.00----1.001.00---------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTTAG.....................................................212.000.00---2.00-----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTCTT..........................................................222.000.00----1.001.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTAG.............................................................191.000.00--1.00------------------
.................................................................................................................................................................................TAGCACCATCAGAATCGG......................................................................................................................................................181.000.00---------------1.00-----
............................................................................................................................................................................................................................................................................GCATCTTTTTTTTTTTTCGGAC.......................................................221.000.00-----1.00---------------
..................................................................................................................................................................................................................................................................................TTTTTTTTTTTCCCTCAGCAGCG................................................231.000.00----1.00----------------
................................................................................................................................................................................CTAGCACCATCAGAAATCC......................................................................................................................................................191.000.00-------------------1.00-
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTCTTG............................................................201.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTCA............................................................201.000.00-----1.00---------------
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTGAGC...........................................................201.000.00----1.00----------------
..............................................................................................................................................................................................................................................................................ATCTTTTTTTTTTTTCGAGC.......................................................201.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTCCTG.............................................................191.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTGAAC.........................................................231.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTTAAT....................................................221.000.00--1.00------------------
...........................................................................................................................................................................................................................................................................TGCATCTTTTTTTTTTTTAG..........................................................201.000.00----1.00----------------
..............................................................................................................................................................................................................................................................................ATCTTTTTTTTTTTTCCCGGCT.....................................................221.000.00-----1.00---------------
................................................................................................................................................................................CTAGCACCATCAGAAATCA......................................................................................................................................................191.000.00------------------1.00--
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTTTTCTG.........................................................221.000.00----1.00----------------
................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTCCCTCTTA....................................................211.000.001.00--------------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCGGGG.....................................................211.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCTTGG...................................................231.000.001.00--------------------
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTTTTGAGC........................................................231.000.00-----1.00---------------
..............................................................................................................................................................................................................................................................................ATCTTTTTTTTTTTTCCCTTC......................................................211.000.00------1.00--------------
.............................................................................................................................................................................................................................................................................CATCTTTTTTTTTTTTCGAGC.......................................................211.000.00-----1.00---------------
..............................................................................................................................................................................................................................................................................ATCTTTTTTTTTTTTCGGTC.......................................................201.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTTCTT....................................................221.000.001.00--------------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTCTG............................................................201.000.00------1.00--------------
................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTCCCTCATG....................................................211.000.00-1.00-------------------
................................................................................................................................................................................................GGAGGAGGCAGGTGGTAGG......................................................................................................................................191.000.00----------------1.00----
..............................................................................................................................................................................................................................................................................ATCTTTTTTTTTTTTCCCTTGG.....................................................221.000.00-----1.00---------------
...........................................................................................................................................................................................................................................................................TGCATCTTTTTTTTTTTTCCTTT.......................................................231.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTGAG...........................................................211.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCA..........................................................2211.001.00-----1.00---------------
................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTCCCTCCAGG...................................................221.000.00--1.00------------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTCTGC...........................................................211.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCCTGG...................................................231.000.00-1.00-------------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTC...........................................................2111.001.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTCTC.............................................................191.000.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTAAC.........................................................231.000.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTCTTT.........................................................231.000.00-----1.00---------------
...........................................................................................................................................................................................AGAATGGAGGAGGCACTG............................................................................................................................................181.000.00-------------1.00-------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTAAC..........................................................221.000.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTT.........................................................2311.001.00----1.00----------------
.............................................................................................................................................................................................................................................................................CATCTTTTTTTTTTTTCCCAAG......................................................221.000.00-1.00-------------------
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTTTGAGC.........................................................221.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCCTT....................................................221.000.001.00--------------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCATG....................................................221.000.00----1.00----------------
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTTTTGAG.........................................................221.000.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTCG............................................................201.000.00------1.00--------------
...........................................................................................................................................................................................................................................................................TGCATCTTTTTTTTTGAGC...........................................................191.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTTTC.......................................................2511.001.00-----1.00---------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCTGAG.......................................................2511.001.00----1.00----------------
...........................................................................................................................................................................................................................................................................TGCATCTTTTTTTTTTTTGGAG........................................................221.000.00-----1.00---------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCAG.....................................................2121.001.00-0.500.50------------------
...........................................................................................................................................................................................AGAATGGAGGAGGCAGTCTG..........................................................................................................................................201.000.00------------1.00--------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCGGCC.....................................................211.000.00----1.00----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTTCCTGAG......................................................261.000.00------1.00--------------
.................................................................................................................................................................................................................................................................................TTTTTTTTTTTTCCCTCAGCAGCG................................................241.000.00----1.00----------------
...............................................................................................................................................................................................................................................................................TCTTTTTTTTTTTTCCCTCCTTG...................................................231.000.00---1.00-----------------
.......................................................................................................................................................................................................................................................................TCATTGCATCTTTTTTAAA...............................................................191.000.00------1.00--------------
..........................................................................................................................................................................................................................................................................TTGCATCTTTTTTTTTTTGAGT.........................................................221.000.00-----1.00---------------
.............................................................................................................................................................................................................................................................................CATCTTTTTTTTTTTTCCCCCGG.....................................................231.000.00---1.00-----------------
.........................................................................................................................................................................................................................................................................ATTGCATCTTTTTTTTTTTAG...........................................................211.000.001.00--------------------
.................................................................................................................................................................................TAGCACCATCAGAATTC.......................................................................................................................................................171.000.00----------1.00----------

Antisense strand
AGGCACCGAAGATGGAGATGTCCCAGGCACCCAGCAGTGTCATGAGTCTGGTATGTCAGCTCACCATCTCAAGTAGTGGACACCAAGGGTGCTTCAGAGTACTCCCCTGCCCCCTCCAAGCCTTTTTTCCCATGCCCCTTTTCCGATGAATGGGTATCCTTGTGGAAATGCCCACACTAGCACCATCAGAATGGAGGAGGCAGGTGGGCTTCTGGCCCCCTAGGGGCAGGCCTTCATCTGCTCCCCTGTGGGCAGGGTTCAATTCATTGCATCTTTTTTTTTTTTCCCTCAGCAGCATTTTGATGGCAGAGCACAGGACTCCCGTGAGTCCCCCTCTTCCTAAGC
...........................................................................................................................................................................(((((......((((....)))).((..(((((((((((....(((((...))))).))))..)))))))..)).)))))((((((............................))))..))....................................................
...........................................................................................................................................................................172........................................................................................................................295................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.................................................................................................................................................................................................................................................................................TTTTTTTTTTTTCCCTCAGAGT.................................................. 223.000.00-------3.00-------------
.................................................................................................................................................................................................................................................................................TTTTTTTTTTTTCCCTCAGAAGT................................................. 232.000.00-------2.00-------------
..........................................................................................................................................................................................................................................................AAAAGATGCAATGAATTGAACCCTGCC.................................................................... 2711.001.00-----------------1.00---
......................................................................................................................................................................................................................................................TGTGGGCAGGGTTCAAGC................................................................................. 181.000.00-----------1.00---------
.................................................................................................................................................................................................................................................................................TTTTTTTTTTTTCCCTCAGAAC.................................................. 221.000.00--------------1.00------
.............................................................................................................................................................................................................................................GCCCACAGGGGAGCAG............................................................................................ 1680.120.12--------------------0.12