ID: uc010hkw.1_intron_4_0_chr3_49713400_f
GENE: APEH(5)
chr3:49713350-49713538+


(1)
AGO1.ip
(2)
AGO2.ip
(4)
B-CELL
(4)
BREAST
(24)
CELL-LINE
(1)
CERVIX
(3)
HEART
(2)
HELA
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
GAGCTTCAACCTGTCAGCGCTGGAGAAACATGGGCCTGTTTATGAGGATGGTGAGGCATCTGGCTGGTGAGCAGGCAGGGTGGACAGGAGGGGTAGCCGTAGCCCTGGGCCCCCCCTGATTGGCCCTCCCTGCACCCAGACTGCTTTGGCTGCCTGTCCTGGTCGCACTCGGAGACACACTTGTTGTAT
................................................................(((...(((((.(((((.((((((.((((..(((.........))))))))))).)).))))).)))))..)))...................................................
................................................................65........................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................AGCAGGCAGGGTGGACAGGAG...................................................................................................2116.006.002.00-------1.00----1.00--------------------------------1.00-------1.00-------
...........................................................................CAGGGTGGACAGGAGGGGTAGC............................................................................................2215.005.00--4.00----------------------------------------1.00------------------
.....................................................................AGCAGGCAGGGTGGACAGGA....................................................................................................2015.005.00---4.00--------------------------------1.00-------------------------
.....................................................................AGCAGGCAGGGTGGACAGGAGG..................................................................................................2214.004.001.00-------------1.00------------------1.00----------------1.00-----------
.....................................................................AGCAGGCAGGGTGGACAGGAGA..................................................................................................2213.006.00------2.00----------1.00--------------------------------------------
...........................................................................CAGGGTGGACAGGAGGGGTAGCCG..........................................................................................2413.003.00---------------2.00------------------------------------1.00---------
.....................................................................AGCAGGCAGGGTGGACAGGAA...................................................................................................2113.005.00--------------1.00----------------1.00------------------------1.00-----
...........................................................................CAGGGTGGACAGGAGGGGTAGA............................................................................................223.000.003.00-------------------------------------------------------------
.....................................................................AGCAGGCAGGGTGGACAGG.....................................................................................................1913.003.00--------1.00-------------------------1.00------1.00--------------------
...........................................................................CAGGGTGGACAGGAGGGGTAGCC...........................................................................................2313.003.00-3.00------------------------------------------------------------
................GCGCTGGAGAAACATGGGCC.........................................................................................................................................................2012.002.00----------2.00---------------------------------------------------
...........................................................................CAGGGTGGACAGGAGGGGTAGAA...........................................................................................232.000.00------------2.00-------------------------------------------------
.....................................................................AGCAGGCAGGGTGGACAGGAGGTAA...............................................................................................2512.004.00-----------2.00--------------------------------------------------
.................................................................................................................CCCTGATTGGCCCTCCCTGCACCCC...................................................2512.002.00----------------2.00---------------------------------------------
.................................................................................................................CCCTGATTGGCCCTCCCTGCACCC....................................................2412.002.00-2.00------------------------------------------------------------
................GCGCTGGAGAAACATGGG...........................................................................................................................................................1812.002.00----2.00---------------------------------------------------------
.....................GGAGAAACATGGGCCTGTTTATGA................................................................................................................................................2412.002.002.00-------------------------------------------------------------
.....................................................................AGCAGGCAGGGTGGACAGGAGGT.................................................................................................2312.004.00-2.00------------------------------------------------------------
..............................................................................................................................................................CTGGTCGCACTCGGAGACACA..........2112.002.00------------------1.00---------------------1.00---------------------
.....................................................................................................................................................................CACTCGGAGACACACTTGT.....1912.002.00-------2.00------------------------------------------------------
...................................................................TGAGCAGGCAGGGTGGAAAGG.....................................................................................................211.000.00------------------------------1.00-------------------------------
..........CTGTCAGCGCTGGAGAAACATGG............................................................................................................................................................2311.001.00----1.00---------------------------------------------------------
.................................................................................................................................................................GTCGCACTCGGAGACA............1611.001.00-------------------1.00------------------------------------------
...................................................................TGAGCAGGCAGGGTGGACAG......................................................................................................2011.001.00--------------------------------1.00-----------------------------
........ACCTGTCAGCGCTGGATT...................................................................................................................................................................181.000.00--------------------------1.00-----------------------------------
.............TCAGCGCTGGAGAAACATGGGCCT........................................................................................................................................................2411.001.00-----1.00--------------------------------------------------------
...............................................................................................................CCCCCTGATTGGCCCTCCCTGCA.......................................................2311.001.00---------------------------------------------------------1.00----
......................................................................................................................................................TGCCTGTCCTGGTCGCACTCGG.................2211.001.00----------------------------1.00---------------------------------
........................................................................................AGGGGTAGCCGTAGCGAA...................................................................................181.000.00--------------------------------------1.00-----------------------
...........................................................................................................................................................GTCCTGGTCGCACTCGGAGACACAC.........2511.001.00---------------------------------------------------1.00----------
.....................................................................AGCAGGCAGGGTGGACAGGAGGGT................................................................................................241.000.00-1.00------------------------------------------------------------
...................................................................TGAGCAGGCAGGGTGGACCGGT....................................................................................................221.000.00-----------------1.00--------------------------------------------
.....TCAACCTGTCAGCGCTGGAGA...................................................................................................................................................................2111.001.00--------------------------------------------1.00-----------------
...................................................................................................................................................................CGCACTCGGAGACACACTTGT.....2111.001.00-----------------------------------------------1.00--------------
..............CAGCGCTGGAGAAACATG.............................................................................................................................................................1811.001.00-------1.00------------------------------------------------------
...................................................................TGAGCAGGCAGGGTGGACAGGAAT..................................................................................................241.000.00-------------------------------------------------------1.00------
............GTCAGCGCTGGAGAAACATGGGC..........................................................................................................................................................2311.001.00---------------------1.00----------------------------------------
.......................................................................................................................................CCAGACTGCTTTGGCTGCCT..................................2011.001.00-----------------------------------------------------------1.00--
........................................................................................................................................................CCTGTCCTGGTCGCACTCGGA................2111.001.00-------------------------1.00------------------------------------
.......................................................................................................................................................................CTCGGAGACACACTTGTTGT..2011.001.00----------------------------------------------------------1.00---
...................................................................TGAGCAGGCAGGGTGGACAGGAGT..................................................................................................241.000.001.00-------------------------------------------------------------
....................................................................GAGCAGGCAGGGTGGACAGGAGG..................................................................................................2311.001.00-------------1.00------------------------------------------------
..............CAGCGCTGGAGAAACATGGGCCTGTTTA...................................................................................................................................................2811.001.00--------------------1.00-----------------------------------------
...........................................................................CAGGGTGGACAGGAGGGGGAGC............................................................................................221.000.00------------------------------------------1.00-------------------
......................................................................GCAGGCAGGGTGGACAGGAGGGTTT..............................................................................................251.000.00---------------------------------------1.00----------------------
..................................................................................................................................................................TCGCACTCGGAGACACACTTGTT....2311.001.00------1.00-------------------------------------------------------
...........................................................................CAGGGTGGACAGGAGGGGTAGCCGT.........................................................................................2511.001.00-1.00------------------------------------------------------------
......................GAGAAACATGGGCCTGTTTATG.................................................................................................................................................2211.001.00-----------------------------1.00--------------------------------
...............AGCGCTGGAGAAACATGGGCAA........................................................................................................................................................221.000.00----------------------1.00---------------------------------------
...............AGCGCTGGAGAAACATGGGCC.........................................................................................................................................................2111.001.00-----------------------------------1.00--------------------------
............GTCAGCGCTGGAGAAACATGGGA..........................................................................................................................................................231.000.001.00-------------------------------------------------------------
..........................................................................GCAGGGTGGACAGGAGGGGTAGC............................................................................................2311.001.00------------------------1.00-------------------------------------
.............................................................................................................................................TGCTTTGGCTGCCTGTCC..............................1811.001.00---------------------------1.00----------------------------------
..................................................................................................................CCTGATTGGCCCTCCCTGCACC.....................................................2211.001.00---------------------------------------------1.00----------------
............................................................................................................................................................TCCTGGTCGCACTCGGAGACA............2111.001.00-----1.00--------------------------------------------------------
..................................................................................................................................TGCACCCAGACTGCTTGG.........................................181.000.00-------------------------------------------------1.00------------
..........................AACATGGGCCTGTTTATGAGGATG...........................................................................................................................................2411.001.00-----1.00--------------------------------------------------------
.....................................................................AGCAGGCAGGGTGGACAGGAGAAAA...............................................................................................2511.006.00-----------------------------------------------------1.00--------
.............TCAGCGCTGGAGAAACATGGG...........................................................................................................................................................2111.001.001.00-------------------------------------------------------------
....................TGGAGAAACATGGGCCTGTT.....................................................................................................................................................2011.001.00-------------------------------------1.00------------------------
.....................................................................AGCAGGCAGGGTGGACAGGAAA..................................................................................................2211.005.001.00-------------------------------------------------------------
..................................................GTGAGGCATCTGGCTGGTGAGCAGGCAGGGTGGACAGGAGGGGTAGCCGTAGCCCTGGGCCCCCCCTGATTGGCCCTCCCTGCACCCA...................................................8811.001.00------------------------------------------------1.00-------------
................GCGCTGGAGAAACATG.............................................................................................................................................................1620.500.50-------------------------------------------------------------0.50
..........CTGTCAGCGCTGGAGAA..................................................................................................................................................................1720.500.50------------------------------------------------------------0.50-
..............................................................................................AGCCGTAGCCCTGGG................................................................................1530.330.33-------------------0.33------------------------------------------
.......................................................................CAGGCAGGGTGGACAGG.....................................................................................................1770.140.14--------0.14-----------------------------------------------------

Antisense strand
GAGCTTCAACCTGTCAGCGCTGGAGAAACATGGGCCTGTTTATGAGGATGGTGAGGCATCTGGCTGGTGAGCAGGCAGGGTGGACAGGAGGGGTAGCCGTAGCCCTGGGCCCCCCCTGATTGGCCCTCCCTGCACCCAGACTGCTTTGGCTGCCTGTCCTGGTCGCACTCGGAGACACACTTGTTGTAT
................................................................(((...(((((.(((((.((((((.((((..(((.........))))))))))).)).))))).)))))..)))...................................................
................................................................65........................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................TGGCTGCCTGTCCTGGGAAT....................... 201.000.00------------------1.00-------------------------------------------
.....................................................................................................................................................CTGCCTGTCCTGGTCAGG...................... 181.000.00-----------------------1.00--------------------------------------
..........................................................................................................................TGGGTGCAGGGAGGGC................................................... 1650.200.20--------------------0.20-----------------------------------------