ID: uc010hki.1_intron_3_0_chr3_48793878_r.5p
GENE: PRKAR2A(8)
chr3:48802237-48802486-


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(22)
CELL-LINE 		(2)
HEART 		(4)
HELA 		(11)
LIVER 		(3)
OTHER 		(1)
OTHER.ip 		(8)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(2)
XRN.ip

Sense strand
ATGTAATAGGAGAGAAGATCTATAAGGATGGAGAACGCATAATCACTCAGGTGAGTGAGGGCTTTACGCAGCTCCTTTCCTGGAAGTCACCCCTGAAGAACTAGTACATCATTTATCTCAAAAACTTCTTGCCGGACGCAGTGGCTCACGCCTGTAATCCCAACACTTCGGGAGGCTGAGGCAGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACTCCATCTCTACTA
...............................................................................................................................((((((.....(((((((....))).....((((........)))).)))).)))))).................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577453(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787
.......................AAGGATGGAGAACGCATA.................................................................................................................................................................................................................18111.0011.00--11.00--------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCGCG.................................................................238.000.006.002.00---------------------------------------------------------------------------
..................TCTATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2316.006.00----2.00-1.00----------1.00-----------1.00-------------------------------1.00---------------
.....................ATAAGGATGGAGAACGCATAATC..............................................................................................................................................................................................................2315.005.00-------------------2.00-------2.00--------------------1.00----------------------------
.....................ATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2015.005.00--------1.001.00-------------------------1.00--------------1.00--------------1.00-----------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGGCG..............................................................244.000.003.001.00---------------------------------------------------------------------------
....................................................................................................................................CGGACGCAGTGGCTCCCGC...................................................................................................194.000.00-----4.00-----------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGCAGG..............................................................2404.001.003.001.00---------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGGAG..............................................................264.000.004.00----------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCGGGG................................................................243.000.003.00----------------------------------------------------------------------------
............AGAAGATCTATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2913.003.00-----------3.00-----------------------------------------------------------------
.....................ATAAGGATGGAGAACGCA...................................................................................................................................................................................................................1813.003.00---3.00-------------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGGGGG.............................................................253.000.002.001.00---------------------------------------------------------------------------
..................................................................................................................................GCCGGACGCAGTGGCTCCCGC...................................................................................................213.000.00-----2.00----------------------------------------------1.00------------------------
.............GAAGATCTATAAGGATGGAGAAC......................................................................................................................................................................................................................2313.003.00----------------3.00------------------------------------------------------------
...................CTATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2213.003.00------------1.00------------2.00---------------------------------------------------
....................TATAAGGATGGAGAACGCA...................................................................................................................................................................................................................1913.003.00---2.00------------------------------------1.00------------------------------------
...............AGATCTATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2613.003.00------1.00--------2.00-------------------------------------------------------------
....................TATAAGGATGGAGAACGCATAATC..............................................................................................................................................................................................................2412.002.00-----------------------2.00-----------------------------------------------------
.......................AAGGATGGAGAACGCATAATCACT...........................................................................................................................................................................................................2412.002.00----------------------1.00-1.00----------------------------------------------------
...TAATAGGAGAGAAGATCTATAAGGACGG...........................................................................................................................................................................................................................282.000.002.00----------------------------------------------------------------------------
......................TAAGGATGGAGAACGCATA.................................................................................................................................................................................................................1912.002.00---------------------1.00--------------1.00----------------------------------------
.................ATCTATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2412.002.00---1.00----------------1.00--------------------------------------------------------
..................................................................................................................................................................................................TGAGGCCAGGAGTTCAAGACCAGCCGGAC...........................292.000.001.001.00---------------------------------------------------------------------------
................................................................................................................................................................................TGAGGCAGGTGGATCACTTGACTAA.................................................252.000.00----------2.00------------------------------------------------------------------
.TGTAATAGGAGAGAAGATCTATAAGGATGGA..........................................................................................................................................................................................................................3112.002.00----2.00------------------------------------------------------------------------
......................TAAGGATGGAGAACGCATAATAAA............................................................................................................................................................................................................242.000.00---2.00-------------------------------------------------------------------------
............................................................................................................................................................................................ATCACTTGAGGCCAGGAGTCGAC.......................................232.000.00-2.00---------------------------------------------------------------------------
................................................................................................................................................................................................CTTGAGGCCAGGAGTTCAAGACCAGCCGGAC...........................312.000.002.00----------------------------------------------------------------------------
........................AGGATGGAGAACGCATAA................................................................................................................................................................................................................1812.002.00--------2.00--------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGGC...............................................................232.000.002.00----------------------------------------------------------------------------
........GGAGAGAAGATCTATAAGG...............................................................................................................................................................................................................................1921.501.50-------------------------------1.50---------------------------------------------
..............AAGATCTATAAGGATGGAGAAC......................................................................................................................................................................................................................2211.001.00---------1.00-------------------------------------------------------------------
........................AGGATGGAGAACGCATA.................................................................................................................................................................................................................1711.001.00------------------------------------------1.00----------------------------------
..................TCTATAAGGATGGAGAACGCAT..................................................................................................................................................................................................................2211.001.00--------------------------1.00--------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGGCG..............................................................261.000.001.00----------------------------------------------------------------------------
........................................................................................................................................................................CGGGAGGCTGAGGCAGGTGGATCACAAA......................................................281.000.00-------------1.00---------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGAGC..............................................................261.000.00-1.00---------------------------------------------------------------------------
.........GAGAGAAGATCTATAAGGATGGAGAACGC....................................................................................................................................................................................................................2911.001.00----1.00------------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGTGGGTTA..........................................................281.000.001.00----------------------------------------------------------------------------
................................GAACGCATAATCACTCAG........................................................................................................................................................................................................1811.001.00---1.00-------------------------------------------------------------------------
...............................................................................................................................................................................CTGAGGCAGGTGGATCACTGATA....................................................231.000.00--------------------------------1.00--------------------------------------------
.......AGGAGAGAAGATCTATAAGGATGGAGAACGCA...................................................................................................................................................................................................................3211.001.00------------------------------------------------------------------------1.00----
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAG..................................................................2001.001.00----------------------------1.00------------------------------------------------
...................................................................................................................................................................CACTTCGGGAGGCTGAGGCAGGGC...............................................................241.000.001.00----------------------------------------------------------------------------
......................................................................................................................................................................................AGGTGGATCACTTGAGGCCAGGAGTTCAAGAC....................................3201.001.00-------1.00---------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGGT...............................................................251.000.001.00----------------------------------------------------------------------------
...................................................................................................ACTAGTACATCATTTATCTCAAA................................................................................................................................2311.001.00------------------------------------------------------------1.00----------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGGCA..............................................................241.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGGGGG.............................................................271.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCTGTG................................................................241.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................................................................TGAGGCCAGGAGTTCAAGACCAGCCTGCCG..........................301.000.00-1.00---------------------------------------------------------------------------
..............................................................................................................................................................CCCAACACTTCGGGAGG...........................................................................1701.001.00------------------1.00----------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGTGGCT............................................................261.000.00-1.00---------------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGCTGG..............................................................2401.001.001.00----------------------------------------------------------------------------
....................TATAAGGATGGAGAACGCATAATCACT...........................................................................................................................................................................................................2711.001.00----1.00------------------------------------------------------------------------
......TAGGAGAGAAGATCTATAAGGATGGA..........................................................................................................................................................................................................................2611.001.00----1.00------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGTAG..............................................................261.000.001.00----------------------------------------------------------------------------
...................................................................................................................................................................CACTTCGGGAGGCTGAGGCAGCTGG..............................................................251.000.001.00----------------------------------------------------------------------------
.................ATCTATAAGGATGGAGAACGCATAATA..............................................................................................................................................................................................................271.000.00-----------------------------1.00-----------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGGAGG.............................................................251.000.001.00----------------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCTCG.................................................................211.000.00-1.00---------------------------------------------------------------------------
......................................................................................................................................................................TTCGGGAGGCTGAGGCAGGTGGATCACTCGAG....................................................321.000.00-1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................CAGGTGGATCACTTGAGGCCAGGAGTCG.........................................281.000.00-1.00---------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGTGGACC...........................................................291.000.00-1.00---------------------------------------------------------------------------
....................TATAAGGATGGAGAACGCATAA................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------1.00---
........................................................................................................................................................................CGGGAGGCTGAGGCAGGTGTGAT...........................................................231.000.00-------------1.00---------------------------------------------------------------
..................................................................................................................................................................................AGGCAGGTGGATCACTTGAGGCCAGCGG............................................281.000.00-1.00---------------------------------------------------------------------------
..................TCTATAAGGATGGAGAACGCATAAT...............................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------1.00--------
...............AGATCTATAAGGATGGAGAACGCA...................................................................................................................................................................................................................2411.001.001.00----------------------------------------------------------------------------
.................................................................................................................................................................AACACTTCGGGAGGCTGAGGCGCG.................................................................241.000.001.00----------------------------------------------------------------------------
....................................................................................................................................CGGACGCAGTGGCTCAC.....................................................................................................1701.001.00--------------------------------------1.00--------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGGTGGGAC...........................................................271.000.00-1.00---------------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGTGGGTC...........................................................291.000.001.00----------------------------------------------------------------------------
...................CTATAAGGATGGAGAACGCATAATCACTCA.........................................................................................................................................................................................................3011.001.00-----------------1.00-----------------------------------------------------------
........................................................................................................................................................................CGGGAGGCTGAGGCAGGTTTT.............................................................211.000.00--------------------1.00--------------------------------------------------------
............................................................................................................................................................ATCCCAACACTTCGGGAGGCTGAGGGAG..................................................................281.000.001.00----------------------------------------------------------------------------
......................TAAGGATGGAGAACGCATAA................................................................................................................................................................................................................2011.001.00--------1.00--------------------------------------------------------------------
........................AGGATGGAGAACGCATAATCACTCAGGGTGA...................................................................................................................................................................................................311.000.00-------------------------------------------1.00---------------------------------
...........................................CACTCAGGTGAGTGAGGGC............................................................................................................................................................................................1911.001.00----1.00------------------------------------------------------------------------
......................TAAGGATGGAGAACGCATAATCAC............................................................................................................................................................................................................2411.001.00----1.00------------------------------------------------------------------------
....................TATAAGGATGGAGAACGCATAATCA.............................................................................................................................................................................................................2511.001.00------------------------1.00----------------------------------------------------
............AGAAGATCTATAAGGATGGAGAACGCATAAT...............................................................................................................................................................................................................3111.001.00---------------1.00-------------------------------------------------------------
.................................................................................................................................................................AACACTTCGGGAGGCTGAGGCTGGC................................................................251.000.00-1.00---------------------------------------------------------------------------
.....................ATAAGGATGGAGAACGCAT..................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00-------------------------
.................ATCTATAAGGATGGAGAACGCAT..................................................................................................................................................................................................................2311.001.00-----------------1.00-----------------------------------------------------------
.............................................................................................................................................................................GGCTGAGGCAGGTGGATGAGA........................................................211.000.00------1.00----------------------------------------------------------------------
.................................................................................................................................................................AACACTTCGGGAGGCTGAGGCTGG.................................................................241.000.001.00----------------------------------------------------------------------------
............AGAAGATCTATAAGGATG............................................................................................................................................................................................................................1811.001.00-------------------------------------1.00---------------------------------------
....................TATAAGGATGGAGAACGCATA.................................................................................................................................................................................................................2111.001.00------1.00----------------------------------------------------------------------
.....................ATAAGGATGGAGAACGCATAATCA.............................................................................................................................................................................................................2411.001.00------------------------------1.00----------------------------------------------
.....................................................................................................................................................................CTTCGGGAGGCTGAGGCAGGTGGTGC...........................................................261.000.001.00----------------------------------------------------------------------------
....................TATAAGGATGGAGAACGCAT..................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------1.00-----------------
......................................................................................................................................................................TTCGGGAGGCTGAGGCAGGTGGACCG..........................................................261.000.00-1.00---------------------------------------------------------------------------
.................................................................................................................................................................................................TTGAGGCCAGGAGTTCAAGACCAGCCGACC...........................301.000.001.00----------------------------------------------------------------------------
.TGTAATAGGAGAGAAGATCT.....................................................................................................................................................................................................................................2011.001.00-------1.00---------------------------------------------------------------------
......................................................................................................................................................................TTCGGGAGGCTGAGGCAGGTT...............................................................211.000.001.00----------------------------------------------------------------------------
.........................................................................................................ACATCATTTATCTCACTTC..............................................................................................................................191.000.00--------------------------------------------------------------------------1.00--
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCTGGC................................................................241.000.00-1.00---------------------------------------------------------------------------
........................................................................................................................................................................................GTGGATCACTTGAGGCCAGGAGTTCAAGACCA..................................3201.001.00------------------1.00----------------------------------------------------------
.......................AAGGATGGAGAACGCATAATCACTCAG........................................................................................................................................................................................................2711.001.00------------------------------------------------------------------1.00----------
..................TCTATAAGGATGGAGAACG.....................................................................................................................................................................................................................1911.001.00---1.00-------------------------------------------------------------------------
......................................................................................................................................................................TTCGGGAGGCTGAGGCAGGTGGACTAC.........................................................271.000.001.00----------------------------------------------------------------------------
............AGAAGATCTATAAGGATGGA..........................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00--------------------------------
.......................................................................................................................................................................TCGGGAGGCTGAGGCAGGTTT..............................................................211.000.00----------------------------------------------1.00------------------------------
............AGAAGATCTATAAGGATGGAGAACG.....................................................................................................................................................................................................................2511.001.00---------1.00-------------------------------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGCGGC.............................................................271.000.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................TGGCCAACATGGTAAAACTCCATAG......251.000.00-------------------------------------------------------------------1.00---------
...................................................................................................................................................................................................................GACCAGCCTGGCCAACATGGTAG................231.000.00-------1.00---------------------------------------------------------------------
.......................................................................................................................................................................TCGGGAGGCTGAGGCAGGTGGATCCCC........................................................271.000.00-1.00---------------------------------------------------------------------------
....................................................................................................................................CGGACGCAGTGGCTCCCCC...................................................................................................191.000.00-----1.00-----------------------------------------------------------------------
....................................................................................................................................................................ACTTCGGGAGGCTGAGGCAGCGG...............................................................2301.001.001.00----------------------------------------------------------------------------
......................TAAGGATGGAGAACGCATAATCA.............................................................................................................................................................................................................2311.001.00------------------------------1.00----------------------------------------------
..................................................................................................................................................................ACACTTCGGGAGGCTGAGGCAGGAGGC.............................................................271.000.00-1.00---------------------------------------------------------------------------
.............................................................................TCCTGGAAGTCACCCCTGAAGAAC.....................................................................................................................................................2411.001.00-----------------------------------------------------------------------1.00-----
.................ATCTATAAGGATGGAGAACGCATAATTT.............................................................................................................................................................................................................281.000.00---------------------------------------------1.00-------------------------------
.......................AAGGATGGAGAACGCA...................................................................................................................................................................................................................1630.670.67------------------0.33--------------------------------------------------------0.33-
........................AGGATGGAGAACGCA...................................................................................................................................................................................................................1540.250.25---------0.25-------------------------------------------------------------------

Antisense strand
ATGTAATAGGAGAGAAGATCTATAAGGATGGAGAACGCATAATCACTCAGGTGAGTGAGGGCTTTACGCAGCTCCTTTCCTGGAAGTCACCCCTGAAGAACTAGTACATCATTTATCTCAAAAACTTCTTGCCGGACGCAGTGGCTCACGCCTGTAATCCCAACACTTCGGGAGGCTGAGGCAGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACTCCATCTCTACTA
...............................................................................................................................((((((.....(((((((....))).....((((........)))).)))).)))))).................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		TAX577453(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787
...............................................................................................................................................GCTCACGCCTGTAATCCCAACACTTCATC.............................................................................. 293.000.00--------------3.00--------------------------------------------------------------
................................................................................................................................................CTCACGCCTGTAATCCCAACAAA................................................................................... 233.000.00--------------------------1.00------------------------------1.00------------1.00------
.......................................................................................................................................................................................GGTGGATCACTTGAGGCCAAAA............................................. 222.000.00-------1.00--------------------------------------------------------1.00------------
......................................................................GCTCCTTTCCTGGAAGTACT................................................................................................................................................................ 202.000.00----------------------------1.00---------------------------------1.00--------------
................................................................................................................................................CTCACGCCTGTAATCCCAACAA.................................................................................... 222.000.00---------------------------------------1.00---------1.00---------------------------
...............................................................................................................................................................................................................................CAACATGGTAAAACTCCATTTG..... 222.000.00------------2.00----------------------------------------------------------------
.............................................................................................................................................................TCCCAACACTTCGGGGCGG.......................................................................... 191.000.00----------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................GGCCAGGAGTTCAAGACCAGCCTGGCCACAGG..................... 321.000.00-1.00---------------------------------------------------------------------------
....................................................................................................................................CGGACGCAGTGGCTCACGCCTGTACCC........................................................................................... 271.000.001.00----------------------------------------------------------------------------
....................................................................................................................................................CGCCTGTAATCCCAACACTTAAC............................................................................... 231.000.00---------------------------------------------------------------------1.00-------
......................TAAGGATGGAGAACGCCT.................................................................................................................................................................................................................. 181.000.00----------1.00------------------------------------------------------------------
...............................................................................................................................................................................................................................CAACATGGTAAAACTCCATTG...... 211.000.00---------------------------------------------------------------1.00-------------
.....................................................................................................................................................................................................................CCAGCCTGGCCAACATGGTACCCC............. 241.000.001.00----------------------------------------------------------------------------
.....................................................................................................................................................GCCTGTAATCCCAACACTTCGGGTGGA.......................................................................... 271.000.00----------------------1.00------------------------------------------------------
....................................................................................................................................................CGCCTGTAATCCCAACAAGCT................................................................................. 211.000.001.00----------------------------------------------------------------------------
......................................................................................................................................GACGCAGTGGCTCACGCCTGTAAACCC......................................................................................... 271.000.00-1.00---------------------------------------------------------------------------
....................................................................................................................................................CGCCTGTAATCCCAAACCC................................................................................... 191.000.00-1.00---------------------------------------------------------------------------
................................................................................................................................................CTCACGCCTGTAATCCCAACAA.................................................................................... 221.000.00---------------------------------1.00-------------------------------------------
.....................................................................................................................................................................................................GGCCAGGAGTTCAAGGGC................................... 181.000.00-----------------------------------------------1.00-----------------------------
.....................................................................................................................................GGACGCAGTGGCTCACGCCTGTCCCC........................................................................................... 261.000.001.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................GGCCAGGAGTTCAAGAGGC.................................. 191.000.00------------------------------------------------------1.00----------------------
....................................................................................................................................................................................GCAGGTGGATCACTTGAGGCCAGGAGCA.......................................... 281.000.00-------------1.00---------------------------------------------------------------
.......................................................................................................................................ACGCAGTGGCTCACGCCTGTTTCC........................................................................................... 241.000.001.00----------------------------------------------------------------------------
......................................................................GCTCCTTTCCTGGAAGACC................................................................................................................................................................. 191.000.00-----------------------------------------1.00-----------------------------------
..................................................................................................................................................CACGCCTGTAATCCCAACATGTG................................................................................. 231.000.00------1.00----------------------------------------------------------------------
...................................................................................................................................................................................................GAGGCCAGGAGTTCAAGACCATGAA.............................. 251.000.00--------------------------------------------------------1.00--------------------
................................................................................................................................................................................................CTTGAGGCCAGGAGTTCAAGACCAGGAA.............................. 281.000.00----1.00------------------------------------------------------------------------
.................................................................................................................................................TCACGCCTGTAATCCCAATCGA................................................................................... 221.000.00----------------------------------------------------------1.00------------------
......................................................................................................................................GACGCAGTGGCTCACGCCTGTAAGG........................................................................................... 251.000.00-1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................GGCCAGGAGTTCAAGAGGCA................................. 201.000.00---------------------1.00-------------------------------------------------------
...................................................................................................................................................ACGCCTGTAATCCCAACACTTCGTCT............................................................................. 261.000.00-------------------------------------------------------1.00---------------------
......................................................................................................................................GACGCAGTGGCTCACGCCTACCC............................................................................................. 231.000.00-1.00---------------------------------------------------------------------------
........................................................................................................................................................................................................CAGGAGTTCAAGACCAGCCTGGCCAACCAC.................... 301.000.00-----------------------------------------------------1.00-----------------------
......................................................................................................................................GACGCAGTGGCTCACGCCTGTATTT........................................................................................... 251.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................CACGCCTGTAATCCCAACACTTTC................................................................................ 241.000.001.00----------------------------------------------------------------------------
................................................................................................................................................................................................................CAAGACCAGCCTGGCCAACACTT................... 231.000.001.00----------------------------------------------------------------------------
...................................................................................................................................................................................................................GACCAGCCTGGCCAACATGGTAAACC............. 261.000.00-1.00---------------------------------------------------------------------------
...................................................................................TTCTTCAGGGGTGACTT...................................................................................................................................................... 1730.330.33----------------------------------------------------------------------------0.33
.................................................................................................................................ACAGGCGTGAGCCACTGCGTCCGGCA............................................................................................... 2660.170.17-0.17---------------------------------------------------------------------------