ID: uc010hki.1_intron_0_0_chr3_48785374_r.5p
GENE: PRKAR2A(11)
chr3:48788818-48789067-


(1)
AGO1.ip 		(3)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(5)
HEART 		(10)
LIVER 		(1)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGTGAAGATGTTTGGCTCCAGCGTGGATCTGGGCAACCTCGGGCAGTAGGTGTGCCACACCCCAGAGCCTTCTTAGTGTGACACCAAAACCTTCTGGTCAGCCACAGAACACATACAGAAAACAGACATGACAGAACTGTTCCTGCCGTTGCCGCCACTGCTGCCATTGCTGTGGTTATGGGCATTTAGAAAACTTGAAAGTCAGCACTAAAGGATGGGCAGAGGTTCAACCCACACCTCCACTTTGCT
...................................................................((((.......(((((.........(((((........)))))......(((..(((((...........))))).)))..))))).(((((.((.......)).)))))...))))..................................................................
............................................................61................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
....................................................................................................................................................................................................................AGGATGGGCAGAGGTTCAAC..................2014.004.00---4.00-----------------------------------------------------
......................................................................................................................................................................ATTGCTGTGGTTATGGGCATT...............................................................2114.004.00--4.00------------------------------------------------------
....................AGCGTGGATCTGGGCAACCTCGGGCAGC..........................................................................................................................................................................................................282.000.00---------2.00-----------------------------------------------
......................................................................................................................................................................ATTGCTGTGGTTATGGGCATTT..............................................................2212.002.00----------------2.00----------------------------------------
..............................................................................................................................................................................................................CACTAAAGGATGGGCAGAGGTT......................2212.002.00-------2.00-------------------------------------------------
.................................................................GAGCCTTCTTAGTGTGATA......................................................................................................................................................................192.000.00-2.00-------------------------------------------------------
...........................................................................................................................CAGACATGACAGAACTGTTC...........................................................................................................2012.002.00--------------------1.00--------------1.00---------------------
......................................................................................................................................GAACTGTTCCTGCCGTTGCCGCCACT..........................................................................................2612.002.00-2.00-------------------------------------------------------
.....................................................................................................................................AGAACTGTTCCTGCCGTTGCCGCCACT..........................................................................................2712.002.001.00----------------------------------------1.00---------------
......................................................................................................................GAAAACAGACATGACAGAA.................................................................................................................1912.002.00-2.00-------------------------------------------------------
................................................................................................................................................................................TTATGGGCATTTAGAAAACTT.....................................................2112.002.002.00--------------------------------------------------------
.....AAGATGTTTGGCTCCAGCGTGGATCTG..........................................................................................................................................................................................................................2712.002.00-----2.00---------------------------------------------------
........................................................................................................................................................................TGCTGTGGTTATGGGCAT................................................................1812.002.00------1.00--------------------1.00-----------------------------
..........................................................................TAGTGTGACACCAAAACCTTCTGGTCAGC...................................................................................................................................................2911.001.00----1.00----------------------------------------------------
............................................................................................................................................................................................................AGCACTAAAGGATGGGC.............................1721.001.00-------------------------1.00-------------------------------
..............................................................................................................................................................................................AAAACTTGAAAGTCAGCACTAAAGGATGGGCA............................3211.001.00-------------------1.00-------------------------------------
...............................................................................................................................................................................................................ACTAAAGGATGGGCAGAGGTTCAA...................2411.001.00-------------------------------------------1.00-------------
..................................................................................................................................................................................ATGGGCATTTAGAAAACTTGAAAGT...............................................2511.001.00---------------1.00-----------------------------------------
....................................................................................................................................................................................................TGAAAGTCAGCACTAAAGGATGGGCAGAG.........................2911.001.00----------1.00----------------------------------------------
...................................................................................................................................ACAGAACTGTTCCTGCCGTTGCCG...............................................................................................2411.001.00-------1.00-------------------------------------------------
......AGATGTTTGGCTCCAGCG..................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00------------
...........................ATCTGGGCAACCTCGGGCAGTAGGTGCG...................................................................................................................................................................................................281.000.00--------1.00------------------------------------------------
...................................................................................................................................................................................................................AAGGATGGGCAGAGGTTCAACCCATA.............261.000.00-1.00-------------------------------------------------------
......................................................................................................................GAAAACAGACATGACAGA..................................................................................................................1811.001.00--------------1.00------------------------------------------
........................................................................................................................................................CCGCCACTGCTGCCATTGCTGTGG..........................................................................2411.001.00-----------------------1.00---------------------------------
............................................................................................................................AGACATGACAGAACTGTTCCTGCCGTTGC.................................................................................................2911.001.00------------------------------------------1.00--------------
...................................................................................................................................................................................TGGGCATTTAGAAAACTTGAAAGTCAGC...........................................2811.001.00----1.00----------------------------------------------------
............................................................................................................................AGACATGACAGAACTG..............................................................................................................1611.001.00------------------------1.00--------------------------------
.........................................GGGCAGTAGGTGTGCCACACCCCAGAG......................................................................................................................................................................................2711.001.00----------1.00----------------------------------------------
............................................................................................................................AGACATGACAGAACTGTTC...........................................................................................................1911.001.00----------------------------1.00----------------------------
.................................................................................................................................TGACAGAACTGTTCCTGCCGTTGCC................................................................................................2511.001.001.00--------------------------------------------------------
............................................................................................................................AGACATGACAGAACTGTTCCTG........................................................................................................2211.001.00----------------------------------------------------1.00----
....................................................................................................................................................................................................................................CAACCCACACCTCCACTTTG..2011.001.00--------------------------------------------------1.00------
.....................................................................................................................AGAAAACAGACATGACATT..................................................................................................................191.000.00--------------------------------1.00------------------------
.......................GTGGATCTGGGCAACCTCGGGCAG...........................................................................................................................................................................................................2411.001.001.00--------------------------------------------------------
......................................................................................................................................................................................................AAAGTCAGCACTAAAGGATGGGCA............................2411.001.001.00--------------------------------------------------------
.................................................................................................................................................................................TATGGGCATTTAGAAAACTTGAA..................................................2311.001.00------------------------------1.00--------------------------
.......................................TCGGGCAGTAGGTGTGCCACACCCCA.........................................................................................................................................................................................2611.001.001.00--------------------------------------------------------
...................................................................................................................................................................................................TTGAAAGTCAGCACTAAAGGATGGGC.............................2611.001.00----1.00----------------------------------------------------
.............TGGCTCCAGCGTGGATCTGGGCAACCTCGGGC.............................................................................................................................................................................................................3211.001.00--------1.00------------------------------------------------
.............................................................................................TCTGGTCAGCCACAGAACACATACA....................................................................................................................................2511.001.001.00--------------------------------------------------------
..................................................................................................................................................................................................................AAAGGATGGGCAGAGGTTCAA...................2111.001.00-1.00-------------------------------------------------------
.........................................................................................................................AACAGACATGACAGAACTGT.............................................................................................................2011.001.00-------------------------------------1.00-------------------
.....................................................................................................................AGAAAACAGACATGACAGAA.................................................................................................................2011.001.00------------1.00--------------------------------------------
..............................................................................................................CACATACAGAAAACACG...........................................................................................................................171.000.00-----------------------------------------------------1.00---
............................................................................................................................................................................GTGGTTATGGGCATTTAGAAAAAT......................................................241.000.00-1.00-------------------------------------------------------
...............................................................................................................................................................................................................ACTAAAGGATGGGCAGAGGTT......................2111.001.00-1.00-------------------------------------------------------
.......................................................................................................................................................................TTGCTGTGGTTATGGGCATTTAG............................................................2311.001.001.00--------------------------------------------------------
...................................................................................................................................................................................TGGGCATTTAGAAAACTTGAAAGTC..............................................2511.001.00------------------------------------1.00--------------------
....................AGCGTGGATCTGGGCAAC....................................................................................................................................................................................................................1811.001.00---------------------------------1.00-----------------------
................................................................................................................................................................................................................CTAAAGGATGGGCAGAGGTTCAA...................2311.001.001.00--------------------------------------------------------
.........................................................................................................................................................................................................GTCAGCACTAAAGGATGGGCAGA..........................2311.001.00----------------------------------1.00----------------------
.......................................................................................................................AAAACAGACATGACAGAACTGTTC...........................................................................................................2411.001.00-----------------1.00---------------------------------------
......................................................................................................................................GAACTGTTCCTGCCGTTGCCGC..............................................................................................2211.001.00-----------1.00---------------------------------------------
............................TCTGGGCAACCTCGGGCAGTAGG.......................................................................................................................................................................................................2311.001.00---------------1.00-----------------------------------------
....................................................................................................................................................................................GGGCATTTAGAAAACTTGAAAGTCAGC...........................................2711.001.00-----------------------------------------------1.00---------
.....................................................................................CAAAACCTTCTGGTCAGCCACA...............................................................................................................................................2211.001.00----------1.00----------------------------------------------
............................................................................................................................AGACATGACAGAACTGTT............................................................................................................1811.001.00------1.00--------------------------------------------------
............................TCTGGGCAACCTCGGGCAGTAGCA......................................................................................................................................................................................................241.000.00-------------1.00-------------------------------------------
................................................................................................................................................................................................................CTAAAGGATGGGCAGAGGTT......................2011.001.00--------------1.00------------------------------------------
.....................................................................................................................AGAAAACAGACATGACAGAACTGTTC...........................................................................................................2611.001.00----------------------------------------1.00----------------
......................................................................................................................................................................................................AAAGTCAGCACTAAAGGATGG...............................2111.001.00-------------1.00-------------------------------------------
....................................................................................................................................................................................GGGCATTTAGAAAACTTGAA..................................................2011.001.00----------------------1.00----------------------------------
.................................................................................................................................................................................................ACTTGAAAGTCAGCACTAAAGGATGGGCAG...........................3011.001.00--------------------------1.00------------------------------
...................................................................................................................................................................................................................AAGGATGGGCAGAGGTTC.....................1811.001.001.00--------------------------------------------------------
..................................................................................................................................................................................................................AAAGGATGGGCAGAGGTTC.....................1911.001.00------------1.00--------------------------------------------
.................................................................................................................................................................................TATGGGCATTTAGAAAACTTGAAAGTCAGC...........................................3011.001.00------------------1.00--------------------------------------
........................................................................................................................AAACAGACATGACAGAACTGTTC...........................................................................................................2311.001.00-------------------------------------------------1.00-------
........................................................................................................................................................................................ATTTAGAAAACTTGAAAGTCAGC...........................................2311.001.00---------------------------------------------1.00-----------
...................................................................................................................................................................................................................AAGGATGGGCAGAGGTTCAACCCACACCTCC........3111.001.001.00--------------------------------------------------------
...................................................................................................................ACAGAAAACAGACATGACAGAACT...............................................................................................................2411.001.00------1.00--------------------------------------------------
...............................................................CAGAGCCTTCTTAGTGTGACAC.....................................................................................................................................................................2211.001.001.00--------------------------------------------------------
................................................................................................................................ATGACAGAACTGTTCCTGCCGTTGCCGC..............................................................................................2811.001.001.00--------------------------------------------------------
...................................................................................................................................................................................TGGGCATTTAGAAAACTTGAA..................................................2111.001.00---------------------------------------1.00-----------------
............................TCTGGGCAACCTCGGGCAGTAGGTGT....................................................................................................................................................................................................2611.001.00----1.00----------------------------------------------------
.......................................................................................................CACAGAACACATACAGAAAACAGACATGACA....................................................................................................................3111.001.00-----------1.00---------------------------------------------
........................................................................................................................AAACAGACATGACAGAACTGTT............................................................................................................2211.001.00---------------------------------------------------1.00-----
................................................................................................................................................................................................................CTAAAGGATGGGCAGAGGTTCA....................2211.001.00-1.00-------------------------------------------------------
....................................................................................................................CAGAAAACAGACATGACAGAACT...............................................................................................................2311.001.00-----1.00---------------------------------------------------
..................CCAGCGTGGATCTGGGCAACCT..................................................................................................................................................................................................................2211.001.00---------------------1.00-----------------------------------
................................................................................................................................................................................TTATGGGCATTTAGAAAACTTGA...................................................2311.001.00------------------------------------------------1.00--------
..................................................................................................................................................................................................................AAAGGATGGGCAGAGGTT......................1820.500.50------------------------------------------------------0.50--
.............................................................................................................................GACATGACAGAACTGTTC...........................................................................................................1820.500.50-----------------0.50---------------------------------------
...............................................................................................................................CATGACAGAACTGTTC...........................................................................................................1670.140.14-------------------------------------------------------0.14-
...................................................................................................................................................................................................TTGAAAGTCAGCACT........................................1590.110.11--------------------------------------------------------0.11

Antisense strand
TGGTGAAGATGTTTGGCTCCAGCGTGGATCTGGGCAACCTCGGGCAGTAGGTGTGCCACACCCCAGAGCCTTCTTAGTGTGACACCAAAACCTTCTGGTCAGCCACAGAACACATACAGAAAACAGACATGACAGAACTGTTCCTGCCGTTGCCGCCACTGCTGCCATTGCTGTGGTTATGGGCATTTAGAAAACTTGAAAGTCAGCACTAAAGGATGGGCAGAGGTTCAACCCACACCTCCACTTTGCT
...................................................................((((.......(((((.........(((((........)))))......(((..(((((...........))))).)))..))))).(((((.((.......)).)))))...))))..................................................................
............................................................61................................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
............................................................................................................................................................CACTGCTGCCATTGCTCCT........................................................................... 191.000.00--------------------------------------1.00------------------
...............................................................................................................................................CTGCCGTTGCCGCCACAGG........................................................................................ 191.000.00---------1.00-----------------------------------------------
.......................................................CCACACCCCAGAGCCGTGC................................................................................................................................................................................ 191.000.00-------------------------------1.00-------------------------
....................................................................................................................................CAGAACTGTTCCTGCCCAGT.................................................................................................. 201.000.00-----------------------------1.00---------------------------
.............................................................................................................................................................ACTGCTGCCATTGCTACCT.......................................................................... 191.000.00----------------------------------------------1.00----------
.............................................................................TGTGACACCAAAACCTTT........................................................................................................................................................... 181.000.00--------1.00------------------------------------------------