ID: uc010hki.1_intron_0_0_chr3_48785374_r.3p
GENE: PRKAR2A(11)
chr3:48785324-48785573-


(6)
B-CELL 		(5)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(7)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AAAAAAAAAAAAGTCATCCTCCTCCAACTACTGATTGACATATGGATCATCAGTTCAGACCCTCACTGCATACAGGATCCCTAGAGGGTTCTATTTAATAGCTTGAGGAAGGGAGACTTTAAAAGGACGTGTGTGAGTGAAATAGGATATAGCCATTACCACGGTGCCAGGACCTGACAGCGTTCCAATTCTTTTTGCAGCATGGGGAATCAAAGGTGGCATGCCAAGTTCAACTCAGGGCTGAGGTATC
....................................................................................................(((..(((((((....))))....((.((((.((((.((...((.....))..))))))))))...))....)))...))).....................................................................
....................................................................................................101.....................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................AGGAAGGGAGACTTTAAA...............................................................................................................................1824.004.00----------2.00----2.00------------------------------
......................................................................................................................TTAAAAGGACGTGTGTGA..................................................................................................................1814.004.004.00---------------------------------------------
................................................................................................................................................................ACGGTGCCAGGACCTGACAGCGTTC.................................................................2514.004.00--1.00--3.00----------------------------------------
.......................................................................................................................TAAAAGGACGTGTGTGAGT................................................................................................................1914.004.001.00----------------2.00----------------1.00-----------
................................................................................................................................................................ACGGTGCCAGGACCTGACAGCGTT..................................................................2414.004.00--4.00-------------------------------------------
.......................................................................................................................TAAAAGGACGTGTGTGAGTG...............................................................................................................2013.003.00--------3.00-------------------------------------
................................................................................................................GAGACTTTAAAAGGACGTGTG.....................................................................................................................2113.003.00----------------2.00----1.00------------------------
........................................................................................................................AAAAGGACGTGTGTGAGTGAAATAG.........................................................................................................2512.002.002.00---------------------------------------------
...........................................................................................................................................................................ACCTGACAGCGTTCCAATTCTTTTGC.....................................................262.000.00---2.00------------------------------------------
.......................................................................................................TGAGGAAGGGAGACTTTAAAAG.............................................................................................................................2212.002.00-----------2.00----------------------------------
.......................................................................................................................TAAAAGGACGTGTGTGAGTGAAA............................................................................................................2312.002.002.00---------------------------------------------
..........................................................................................................................................................................................................TGGGGAATCAAAGGTGGCA.............................1912.002.00-------------2.00--------------------------------
......................................................................................................................TTAAAAGGACGTGTGTGAGT................................................................................................................2012.002.00------------------------------------1.00--1.00------
.........................................................................................................................................TGAAATAGGATATAGCCATTACCACGGT.....................................................................................2811.001.00----1.00-----------------------------------------
.....................................................................................................................................................................GCCAGGACCTGACAGCGTTT.................................................................201.000.00-----------------------------------1.00----------
.................................................................................................................................TGTGTGAGTGAAATAGGATATAG..................................................................................................2311.001.00-1.00--------------------------------------------
........................................................................................................................................................................................................CATGGGGAATCAAAGGTGGCATGCCAAG......................2811.001.00--------------------------------------1.00-------
..........................................................................................................................................................................................................TGGGGAATCAAAGGTGGCATGCCAAGCTC...................291.000.00---1.00------------------------------------------
....................................................................................................................CTTTAAAAGGACGTGTGTGAGTG...............................................................................................................2311.001.00-------------------------------------1.00--------
..........................................................................................................................................................................................AATTCTTTTTGCAGCATGGG............................................2011.001.00-1.00--------------------------------------------
.........................AACTACTGATTGACATATGGA............................................................................................................................................................................................................2111.001.00-1.00--------------------------------------------
...................................................AGTTCAGACCCTCACTGTATA..................................................................................................................................................................................211.000.00--------------------------1.00-------------------
....................................................................................................GCTTGAGGAAGGGAGACTTTAA................................................................................................................................2211.001.00-1.00--------------------------------------------
....................................GACATATGGATCATCAGTTCAGACC.............................................................................................................................................................................................2511.001.00----1.00-----------------------------------------
...........................................................................................TATTTAATAGCTTGAGGAAGGGAGA......................................................................................................................................2511.001.00----1.00-----------------------------------------
..........................................................................................................................................................ATTACCACGGTGCCAGGACCTGACAGC.....................................................................2711.001.00----1.00-----------------------------------------
.....................................................................................................................................................................GCCAGGACCTGACAGCGTTCCAAT.............................................................2411.001.00-----1.00----------------------------------------
....................................GACATATGGATCATCGACA...................................................................................................................................................................................................191.000.00----------------------------------------1.00-----
.................................................................................................................AGACTTTAAAAGGACGTGTGTGAGTG...............................................................................................................2611.001.00-1.00--------------------------------------------
...................................................................................................AGCTTGAGGAAGGGAGACTTTAAAAGGACGT........................................................................................................................3111.001.00-------------------------------1.00--------------
.............................................................................................................................................................ACCACGGTGCCAGGACCTGACAGCGCTCC................................................................291.000.00---1.00------------------------------------------
.............................................................................................................................................................................................TCTTTTTGCAGCATGGGG...........................................1811.001.00-----------------------1.00----------------------
.......................................................................................................................................................................................................GCATGGGGAATCAAAGGTGGCAA............................231.000.00-------------------------1.00--------------------
..........................................................................................................................................................ATTACCACGGTGCCAGGACCTGACAGCTCC..................................................................3011.001.00---1.00------------------------------------------
..............................................................................................................................ACGTGTGTGAGTGAAATAGGATATAG..................................................................................................2611.001.00------------1.00---------------------------------
..............................................................................................................GGGAGACTTTAAAAGGACGT........................................................................................................................2011.001.00-1.00--------------------------------------------
..................................................................................................................GACTTTAAAAGGACGTGTGTGAGTGAAATAG.........................................................................................................3111.001.00------------1.00---------------------------------
................................................................................................................................................................................................................................CAAGTTCAACTCAGGGCTGAGGTATA261.000.00-1.00--------------------------------------------
......................................................................................................................TTAAAAGGACGTGTGTGAGTG...............................................................................................................2111.001.001.00---------------------------------------------
..................CTCCTCCAACTACTGATTGACATATTT.............................................................................................................................................................................................................271.000.00--------------------1.00-------------------------
.............................................................................................TTTAATAGCTTGAGGAAGGGAGAC.....................................................................................................................................2411.001.00------1.00---------------------------------------
.............................................................................................................................................................ACCACGGTGCCAGGACCTGACA.......................................................................2211.001.00------1.00---------------------------------------
.............................................................................................................................GACGTGTGTGAGTGAAATAGGATATAGCCA...............................................................................................3011.001.00----------------------1.00-----------------------
..............CATCCTCCTCCAACTACTGATTGAC...................................................................................................................................................................................................................2511.001.00------1.00---------------------------------------
.........................................................................................................................AAAGGACGTGTGTGAGTGA..............................................................................................................1911.001.00-------------------1.00--------------------------
............................................................................................................................................................................................................................ATGCCAAGTTCAACTCAGGGCTGA......2411.001.00---------------------------------1.00------------
..........................................................................................................................AAGGACGTGTGTGAGTGAA.............................................................................................................1911.001.00---------------------------1.00------------------
.............................................................................................................................................................ACCACGGTGCCAGGACCTGACAGCGTCC.................................................................281.000.00--------------1.00-------------------------------
.........................................ATGGATCATCAGTTCAGACCC............................................................................................................................................................................................2111.001.00-1.00--------------------------------------------
.........................................................GACCCTCACTGCATACAGGA.............................................................................................................................................................................2011.001.00--1.00-------------------------------------------
....................................................................................................................CTTTAAAAGGACGTGTGTGAG.................................................................................................................2111.001.00-----------------------------1.00----------------
.......................................................................................................................................................................................................................................AACTCAGGGCTGAGGTATC1911.001.00--1.00-------------------------------------------
.....................................................................................................................TTTAAAAGGACGTGTGTGAG.................................................................................................................2011.001.00------------------------1.00---------------------
..........................................................................................................................................................................................AATTCTTTTTGCAGCATGGGGAATC.......................................2511.001.00-1.00--------------------------------------------
..................................................................................................................................................................................AGCGTTCCAATTCTTTTTGCAGCATGGGGA..........................................3011.001.00--------------1.00-------------------------------
.......................................................................................................TGAGGAAGGGAGACTTTAAAAGG............................................................................................................................2311.001.00--1.00-------------------------------------------
.........................................................................................................................................TGAAATAGGATATAGCCATTACCACGGTGC...................................................................................3011.001.00----1.00-----------------------------------------
...........................................................................................................................................................................ACCTGACAGCGTTCCAATTCTTTTTG.....................................................2611.001.00-----1.00----------------------------------------
...........................................................................................................................AGGACGTGTGTGAGTGAAA............................................................................................................1911.001.00------1.00---------------------------------------
................................................ATCAGTTCAGACCCTCACTGC.....................................................................................................................................................................................2111.001.00------------------1.00---------------------------
..............................................................................................................GGGAGACTTTAAAAGGACGTGTGTGAGTGAAATAG.........................................................................................................3511.001.00------------------------------1.00---------------
.............................................................................................................................................................ACCACGGTGCCAGGACCTGACAGCGTCCC................................................................291.000.00---1.00------------------------------------------
....................................................................................................................................................................................................................................TTCAACTCAGGGCTGAGGTA..2011.001.00--------------------------------1.00-------------
..............................................................................................................................................TAGGATATAGCCATTACCACGGTGCCAGG...............................................................................2911.001.00----1.00-----------------------------------------
..............................CTGATTGACATATGGAT...........................................................................................................................................................................................................1720.500.50------------------------------------------0.50---
.......................................................................................................................................................................CAGGACCTGACAGCGT...................................................................1620.500.50-------------------------------------------0.50--
..............................................................................................................................................................................................CTTTTTGCAGCATGGGGA..........................................1820.500.50-----------------------------------------0.50----
...................................................................................................................................................................................................TGCAGCATGGGGAATC.......................................1630.330.33---------------------------------------------0.33
........................................................................................................................................................................AGGACCTGACAGCGT...................................................................1530.330.33--------------------------------------------0.33-

Antisense strand
AAAAAAAAAAAAGTCATCCTCCTCCAACTACTGATTGACATATGGATCATCAGTTCAGACCCTCACTGCATACAGGATCCCTAGAGGGTTCTATTTAATAGCTTGAGGAAGGGAGACTTTAAAAGGACGTGTGTGAGTGAAATAGGATATAGCCATTACCACGGTGCCAGGACCTGACAGCGTTCCAATTCTTTTTGCAGCATGGGGAATCAAAGGTGGCATGCCAAGTTCAACTCAGGGCTGAGGTATC
....................................................................................................(((..(((((((....))))....((.((((.((((.((...((.....))..))))))))))...))....)))...))).....................................................................
....................................................................................................101.....................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..........................................................................GGATCCCTAGAGGGTAAA.............................................................................................................................................................. 183.000.00-------3.00--------------------------------------
.................................................................................................ATAGCTTGAGGAAGGGAACC..................................................................................................................................... 202.000.00---------2.00------------------------------------
................TCCTCCTCCAACTACTGC........................................................................................................................................................................................................................ 181.000.00----------------------------1.00-----------------
..........................................................................................CTCAAGCTATTAAATAG............................................................................................................................................... 1730.330.33---------0.33------------------------------------