ID: uc010hji.2_intron_7_0_chr3_46593101_r.5p
GENE: (1)
chr3:46607467-46607716-


(2)
AGO2.ip
(3)
B-CELL
(10)
BREAST
(7)
CELL-LINE
(28)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(1)
HELA
(1)
LIVER
(3)
OTHER
(1)
RRP40.ip
(29)
SKIN

Sense strand
ACAGCCGCGGCGGGCAGGCCAGGACTGTCAGTGCCCGCCCCTCGGGGCAGGTAAGCGCTGGGCGTCCGAGGTGGCCGGGGGGCGGGAGCGGGGGCCTTGCGCTCCCCGTGGGAGGACGCGGGCGGATGGCCGGTGCCCCGGGCGCTCAGTTGTTTAATCCTTCCTCTGTGCCTTGGTGACCTGCAATCTGCCGGAGCGACAGGGGTAAACGTCCCTAACCGGACAGCGGCTGGGGCTTAGGCATCCACCG
....................................................................((((.(((((((.((((..((((((((.....)).))))))(((((((....(((.....))).(((((...)))))............))))))).)))).))))))).))))....................................................................
..................................................................67.................................................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR189784SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040040(GSM532925)
G612N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532889(GSM532889)
G576N. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532887(GSM532887)
G761N. (cervix)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040007(GSM532892)
G601T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................TGGCCGGGGGGCGGGCGC.................................................................................................................................................................1824.000.00--4.003.001.00--1.00--1.001.001.001.00----1.001.001.00--1.001.00-1.00----1.001.00---1.00---1.00---1.00-------------------------------------------
........................................................................GGCCGGGGGGCGGGAGC.................................................................................................................................................................17318.6718.6715.001.33---1.00------------------------------------------0.33-------0.33-0.330.33----------------------------
...............................................................................GGGCGGGAGCGGGGGCTTTT.......................................................................................................................................................203.000.00-----------------------------1.00---1.00---1.00--------------------------------------------------
.......................................................................TGGCCGGGGGGCGGGCGCC................................................................................................................................................................193.000.00------------------------------1.00-----------1.001.00--------------------------------------------
........................................................................GGCCGGGGGGCGGGAGT.................................................................................................................................................................172.000.00-1.00-------------------------1.00------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGATC.................................................................................................................................................................172.000.001.001.00--------------------------------------------------------------------------------------
.........................................................................GCCGGGGGGCGGGAGTCG...............................................................................................................................................................181.000.001.00---------------------------------------------------------------------------------------
.........................................................................GCCGGGGGGCGGGAGCCGGC.............................................................................................................................................................2041.000.25----------------------0.25--------------------------0.25--------------0.250.25----------------------
.......................................................................TGGCCGGGGGGCGGGCGT.................................................................................................................................................................181.000.00-------1.00--------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGACG.................................................................................................................................................................171.000.001.00---------------------------------------------------------------------------------------
..AGCCGCGGCGGGCAGGCCAGGACTGTCAGTGCCC......................................................................................................................................................................................................................3411.001.00-----------------------------------------1.00----------------------------------------------
........................................................................GGCCGGGGGGCGGGAGACGG..............................................................................................................................................................201.000.00-----1.00----------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAAA.................................................................................................................................................................171.000.00------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................CTTCCTCTGTGCCTTGATT........................................................................191.000.00---------1.00------------------------------------------------------------------------------
..................................................GTAAGCGCTGGGCGTGCAG.....................................................................................................................................................................................191.000.00--------1.00-------------------------------------------------------------------------------
.......................................................................TGGCCGGGGGGCGGGAAGAG...............................................................................................................................................................201.000.00----------------------------------1.00-----------------------------------------------------
............................................................................GGGGGGCGGGAGCGGGGGAC..........................................................................................................................................................201.000.00--------------------------------------1.00-------------------------------------------------
....................................................................................................................CGCGGGCGGATGGCCGGGGTG.................................................................................................................211.000.00-------------------------1.00--------------------------------------------------------------
.......................................................................TGGCCGGGGGGCGGGCTC.................................................................................................................................................................181.000.00--------------1.00-------------------------------------------------------------------------
.....................................................................GGTGGCCGGGGGGCGGGGGGC................................................................................................................................................................211.000.00--------1.00-------------------------------------------------------------------------------
....................AGGACTGTCAGTGCCCG.....................................................................................................................................................................................................................1711.001.00----------------------------1.00-----------------------------------------------------------
..........................................................................CCGGGGGGCGGGAGCCGGC.............................................................................................................................................................1980.880.38-------------------0.12-0.12----------------------------------------0.25---------------------0.12-0.120.12
.........................................................................GCCGGGGGGCGGGAGCCG...............................................................................................................................................................1840.750.25--------------------------------------------------0.25----------0.25-0.25------------------------
........................................................................GGCCGGGGGGCGGGAGCC................................................................................................................................................................1830.6718.670.67---------------------------------------------------------------------------------------
..........................................................................CCGGGGGGCGGGAGCGG...............................................................................................................................................................1720.500.50-----------------------------------------------0.50----------------------------------------
........................................................................GGCCGGGGGGCGGGAGCGGG..............................................................................................................................................................2020.500.50----------------------0.50-----------------------------------------------------------------
....................AGGACTGTCAGTGCCC......................................................................................................................................................................................................................1620.500.50----------------------------------------------0.50-----------------------------------------
.........................................................................GCCGGGGGGCGGGAGCCGG..............................................................................................................................................................1940.500.25-0.25-----------------------------------------------------------------0.25--------------------
..........................................................................CCGGGGGGCGGGAGC.................................................................................................................................................................1580.380.38-----------------0.12--------------------------------0.12----------------------------------0.12--
........................................................................GGCCGGGGGGCGGGAGCAGG..............................................................................................................................................................2030.3318.67-0.33--------------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCAGGC.............................................................................................................................................................2130.3318.67-----0.33----------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCAGA..............................................................................................................................................................2030.3318.670.33---------------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCAGC..............................................................................................................................................................2030.3318.670.33---------------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCA................................................................................................................................................................1830.3318.67-0.33--------------------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCCGG..............................................................................................................................................................2030.3318.67----------------------0.33-----------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGAGCCG...............................................................................................................................................................1930.3318.67-----0.33----------------------------------------------------------------------------------
.........................................................................GCCGGGGGGCGGGAGCC................................................................................................................................................................1740.250.25------------------------------------------------------------------0.25---------------------
.........................................................................GCCGGGGGGCGGGAGCCGC..............................................................................................................................................................1940.250.25-0.25--------------------------------------------------------------------------------------
.........................................................................GCCGGGGGGCGGGAGC.................................................................................................................................................................1640.250.25-----------0.25----------------------------------------------------------------------------
.........................................................................GCCGGGGGGCGGGAGCCGGG.............................................................................................................................................................2040.250.25-0.25--------------------------------------------------------------------------------------
......................................................................GTGGCCGGGGGGCGGG....................................................................................................................................................................1650.200.20--------------------------------------------------------------------0.20-------------------
..........................................................................CCGGGGGGCGGGAGCCGC..............................................................................................................................................................1880.120.38------------------0.12---------------------------------------------------------------------
..........................................................................CCGGGGGGCGGGAGCAGGG.............................................................................................................................................................1980.120.38----------------0.12-----------------------------------------------------------------------

Antisense strand
ACAGCCGCGGCGGGCAGGCCAGGACTGTCAGTGCCCGCCCCTCGGGGCAGGTAAGCGCTGGGCGTCCGAGGTGGCCGGGGGGCGGGAGCGGGGGCCTTGCGCTCCCCGTGGGAGGACGCGGGCGGATGGCCGGTGCCCCGGGCGCTCAGTTGTTTAATCCTTCCTCTGTGCCTTGGTGACCTGCAATCTGCCGGAGCGACAGGGGTAAACGTCCCTAACCGGACAGCGGCTGGGGCTTAGGCATCCACCG
....................................................................((((.(((((((.((((..((((((((.....)).))))))(((((((....(((.....))).(((((...)))))............))))))).)))).))))))).))))....................................................................
..................................................................67.................................................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189782SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR189784SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040040(GSM532925)
G612N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532889(GSM532889)
G576N. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532887(GSM532887)
G761N. (cervix)
TAX577743(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR040030(GSM532915)
G013N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM532888(GSM532888)
G761T. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR040007(GSM532892)
G601T. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................GTGGCCGGGGGGCGGGCG.................................................................................................................................................................. 183.830.00------0.17---0.17-0.170.170.170.17--------------------------------0.17--0.330.170.33---------------0.170.170.17-0.170.170.170.17--0.170.170.17-0.17----
.............................................................................................................CCGCCCGCGTCCTCCC............................................................................................................................. 1612.002.00----2.00-----------------------------------------------------------------------------------
.........................................................................................................................................GAAGGATTAAACAACTGAGCGCCCGG....................................................................................... 2611.001.00-----------------1.00----------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGACCGC............................................................................................................................................................... 191.000.00------1.00---------------------------------------------------------------------------------
.................................................................................................................................CCGGTGCCCCGGGCGGCGG...................................................................................................... 191.000.00---------------------1.00------------------------------------------------------------------
.........................................................................................GGGGGCCTTGCGCTCCTCG.............................................................................................................................................. 191.000.00----------------1.00-----------------------------------------------------------------------
..........................................................................CCGGGGGGCGGGAGCGGGA............................................................................................................................................................. 1981.000.00---------1.00------------------------------------------------------------------------------
.....................................................................GGTGGCCGGGGGGCGCGTC.................................................................................................................................................................. 191.000.00-----------------------------------1.00----------------------------------------------------
.....................................................................GGTGGCCGGGGGGCGGCGTC................................................................................................................................................................. 201.000.00---------------1.00------------------------------------------------------------------------
........................................................................GGCCGGGGGGCGGGACCG................................................................................................................................................................ 181.000.00---------------------------------------------1.00------------------------------------------
................................GCCCGCCCCTCGGGGGAG........................................................................................................................................................................................................ 181.000.00---------------------------------------1.00------------------------------------------------
......................................................................GTGGCCGGGGGGCGGGCGT................................................................................................................................................................. 190.670.00------0.17-----------------------------------------------------------------0.17-----0.17---0.17-----
.............................................................................................................CGCCCGCGTCCTCCC.............................................................................................................................. 1530.670.67------------------------------------------------------0.33--0.33------------------------------
...........................................................................CCCCCGCTCCCGCCCCCCG............................................................................................................................................................ 1920.500.50----------0.50-----------------------------------------------------------------------------
........................................................................GCTCCCGCCCCCCGGCC................................................................................................................................................................. 1730.330.33-------------------------------------------------------0.33--------------------------------
......................................................................CCGCCCCCCGGCCAC..................................................................................................................................................................... 1560.330.33-------------------------------------------------0.17--0.17-----------------------------------
.........GTCCTGGCCTGCCCGC................................................................................................................................................................................................................................. 1640.250.25------------------------------------------------------------0.25---------------------------
......................................................................GTGGCCGGGGGGCGGGAGC................................................................................................................................................................. 190.170.00-----------------------------------------------------------------------------0.17----------
..............................................................................................................CCGCCCGCGTCCTCC............................................................................................................................. 1580.120.12--------------------0.12-------------------------------------------------------------------