ID: uc010hhf.2_intron_1_0_chr3_38539270_f.3p
GENE: EXOG(2)
chr3:38540972-38541221+


(4)
BREAST
(13)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(2)
OTHER
(1)
SKIN

Sense strand
AATATTATTTGAAAATAGGGAGCAATGTACCTGTGTTTTACTTGATTTTAATGTAAAAGGTCTTCTGTTTTCAGTAATGATGGACTGAGTTATTCAGATAGAATCTTCCTGCTGAAACAGAAAATGTTAGTATATAAAAAGTGTATATCTGTATTTTTTTTACCTTTTTTTTTGAGATGGATTTTTGCTATGTTGCCTAGGCTGGTCTTGAATTTCTGGGTTCAAGTGACCCTCCTGCCTCAGCCTCCTG
.................................................................................((.........(((((.(((.......))))))))..(((((((((..(((((((.....)))))))..)))))))))...))......................................................................................
..........................................................................75.......................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...............................................................................ATGGACTGAGTTATTCCT.........................................................................................................................................................18134.001.0029.003.00-----2.00------------------
................................................................................TGGACTGAGTTATTCCATC.......................................................................................................................................................1916.000.00--16.00-----------------------
...............................................................................ATGGACTGAGTTATTCCATC.......................................................................................................................................................20113.001.00--13.00-----------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCCTGC.253.000.00---3.00----------------------
...........................................................................................................................................................TTTTTTACCTTTTTTTTAAAT..........................................................................212.000.00----------1.00----1.00----------
...............................................................................................................................................................................................................................AAGTGACCCTCCTGCCTCAGACCC...242.000.00-----2.00--------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCCTGC272.000.00-----2.00--------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCTGGG272.000.00---2.00----------------------
...............................................................................................................................................................TTACCTTTTTTTTTGGACC........................................................................192.000.00-----2.00--------------------
...............................................................................ATGGACTGAGTTATTCC..........................................................................................................................................................1712.001.002.00-------------------------
...............................................................................................................................................................................................................................AAGTGACCCTCCTGCCTCAGCCTCCTGC281.000.00-----1.00--------------------
...........................................................................................................................................................TTTTTTACCTTTTTTTTTAAAT.........................................................................221.000.00---------------1.00----------
.........................................................................................................................................................................................................CTGGTCTTGAATTTCTGGGTTCAAGTGA.....................2811.001.00-----------------1.00--------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCAGCC.......191.000.00---1.00----------------------
...............................................................................................................................................................TTACCTTTTTTTTTGTCG.........................................................................181.000.00---1.00----------------------
..........................................................................TAATGATGGACTGAGACT..............................................................................................................................................................181.000.00--------------------1.00-----
............................................................................................................................................................................................................................TTCAAGTGACCCTCCTGCCTCAGCCTCCCAG311.000.00-----------1.00--------------
..................................................................................................................................................ATCTGTATTTTTTTTACCTG....................................................................................201.000.00------------1.00-------------
.............................................................................................................................................................................................ATGTTGCCTAGGCTGGTCGAAC.......................................221.000.00---1.00----------------------
.....................................................................................................................................................TGTATTTTTTTTACCTTTTTTTTTTGG..........................................................................271.000.00---1.00----------------------
.............................................................................................................................................................TTTTACCTTTTTTTTTGCCTC........................................................................211.000.00-----------1.00--------------
.......................................................................................................................................................TATTTTTTTTACCTTTTTTTTCTT...........................................................................2421.000.50---1.00----------------------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCTCCGAG231.000.00---1.00----------------------
.............................................................................................................................................................TTTTACCTTTTTTTTTGAGATGGAGTC..................................................................271.000.00-----1.00--------------------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCTCACG221.000.00-----1.00--------------------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCGAAG.211.000.00---1.00----------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCTCTC.....211.000.00---1.00----------------------
.............................................................................................TCAGATAGAATCTTCTAC...........................................................................................................................................181.000.00---------1.00----------------
...............................................................................ATGGACTGAGTTATTC...........................................................................................................................................................1611.001.00-------1.00------------------
...............................................................................................................................................................................................................................AAGTGACCCTCCTGCCTCAGCCTCCTCC281.000.00---1.00----------------------
............................................................................................................................................GTGTATATCTGTATTTTTT...........................................................................................1911.001.00--------------1.00-----------
..................................................................................................................................................................................................................................TGACCCTCCTGCCTCAGCCTACCG241.000.00-----1.00--------------------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCGAT..201.000.00---1.00----------------------
................................................................................................................................................................TACCTTTTTTTTTGACG.........................................................................171.000.00----------1.00---------------
...............................................................................................................................................................................................................................AAGTGACCCTCCTGCCTCAGCCTCCTCAGC301.000.00-----1.00--------------------
.........................................................................................................................................................TTTTTTTTACCTTTTTTTTTTTG..........................................................................231.000.00----------------1.00---------
.........................................................................................................................................................TTTTTTTTACCTTTTTTTTTTGTG.........................................................................241.000.00---1.00----------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCAGC261.000.00---1.00----------------------
.................................TGTTTTACTTGATTTTG........................................................................................................................................................................................................171.000.00---------1.00----------------
................................................................................................................................................................................................TTGCCTAGGCTGGTCGAAC.......................................191.000.00---1.00----------------------
.......................................................................................................................................................TATTTTTTTTACCTTTTTTTCAG............................................................................231.000.00----------------1.00---------
..................................................................................................................................................................................................................................TGACCCTCCTGCCTCAGCCTCTGGG251.000.00-----1.00--------------------
................................................................................TGGACTGAGTTATTCCTT........................................................................................................................................................181.000.00-1.00------------------------
..........................................................................................................................................................TTTTTTTACCTTTTTTTTTCTGA.........................................................................231.000.00------------------------1.00-
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCACG261.000.00---1.00----------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCCAGAG281.000.00---1.00----------------------
............................................................................ATGATGGACTGAGTTAT.............................................................................................................................................................1720.500.50-----------------0.50--------
.......................................................................................................................................................TATTTTTTTTACCTTTTTTTT..............................................................................2120.500.50-----------0.50--------------
..........................................................................................................................................................TTTTTTTACCTTTTTTTTTG............................................................................2030.330.33----------0.33---------------
...........................................................................................................................................................TTTTTTACCTTTTTTTTTG............................................................................1960.170.17----------0.17---------------

Antisense strand
AATATTATTTGAAAATAGGGAGCAATGTACCTGTGTTTTACTTGATTTTAATGTAAAAGGTCTTCTGTTTTCAGTAATGATGGACTGAGTTATTCAGATAGAATCTTCCTGCTGAAACAGAAAATGTTAGTATATAAAAAGTGTATATCTGTATTTTTTTTACCTTTTTTTTTGAGATGGATTTTTGCTATGTTGCCTAGGCTGGTCTTGAATTTCTGGGTTCAAGTGACCCTCCTGCCTCAGCCTCCTG
.................................................................................((.........(((((.(((.......))))))))..(((((((((..(((((((.....)))))))..)))))))))...))......................................................................................
..........................................................................75.......................................................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...............................................................................ATGGACTGAGTTATTCGTCT....................................................................................................................................................... 201196.000.00154.0029.00--1.00-6.00-3.00----2.00-----1.00------
...............................................................................ATGGACTGAGTTATTCGT......................................................................................................................................................... 18189.000.0039.0039.00--11.00---------------------
...............................................................................ATGGACTGAGTTATTCGATC....................................................................................................................................................... 20121.000.00--21.00-----------------------
...............................................................................ATGGACTGAGTTATTCGTC........................................................................................................................................................ 19116.000.007.001.006.00-1.00---1.00-----------------
...............................................................................ATGGACTGAGTTATTGTCT........................................................................................................................................................ 1913.000.006.005.00--1.00---1.00-----------------
...............................................................................ATGGACTGAGTTATTCG.......................................................................................................................................................... 17113.000.0011.00------2.00------------------
...............................................................................ATGGACTGAGTTATTGTC......................................................................................................................................................... 188.000.00-2.005.00-1.00---------------------
...............................................................................ATGGACTGAGTTATTGATC........................................................................................................................................................ 194.000.00--4.00-----------------------
..............................................................................GATGGACTGAGTTATTTCT......................................................................................................................................................... 194.000.00----4.00---------------------
..............................................................................................................................................................................................TGTTGCCTAGGCTGGTCTTGGGG..................................... 231.000.00-----1.00--------------------
.........................................................................................................................................................TTTTTTTTACCTTTTTTTGGAA........................................................................... 221.000.00-----------------------1.00--
......................................................................................................ATCTTCCTGCTGAAACACACA............................................................................................................................... 211.000.00---1.00----------------------
...............................................................................ATGGACTGAGTTATTCGTAT....................................................................................................................................................... 2011.000.001.00-------------------------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCTCCTGGGG 251.000.00-----1.00--------------------
.....................................................................................................................................................................................................................................CCCTCCTGCCTCAGCCTCCTGCCCC 251.000.00-----1.00--------------------
...............................................................................ATGGACTGAGTTATTCGGCT....................................................................................................................................................... 2011.000.001.00-------------------------
..............................................................................................................................................................................AGATGGATTTTTGCTATGTTGTT..................................................... 231.000.00------------------1.00-------
....................................................................................................................................................................................................................................ACCCTCCTGCCTCAGCCTCCTGGCC 251.000.00---1.00----------------------
...............................................................................ATGGACTGAGTTATTCGA......................................................................................................................................................... 1811.000.00------1.00-------------------
.....................................................................................................................................................................................................................................CCCTCCTGCCTCAGCCTCCTCGCG 241.000.00---1.00----------------------
...................................................................................................................................................................................................................................GACCCTCCTGCCTCAGCCTCCTCCC 251.000.00---1.00----------------------
...........................................................................................................................................................................................................................GTTCAAGTGACCCTCCTCTG........... 201.000.00---------------------1.00----
..................................GTTTTACTTGATTTTATTG..................................................................................................................................................................................................... 191.000.00---------1.00----------------
...............................................................................................................................................................................................GTTGCCTAGGCTGGTCTTGAGGCG................................... 241.000.00---1.00----------------------
.............................................................................................................................GTTAGTATATAAAAAGG............................................................................................................ 171.000.00------------1.00-------------
..............................................................................................................................................................................AGATGGATTTTTGCTATGTTGTAT.................................................... 241.000.00--------------1.00-----------
.....................................................................................................................................................................................................................................CCCTCCTGCCTCAGCCTCCCCGC 231.000.00-----1.00--------------------
................................................................................................................................................................................................................................AGTGACCCTCCTGCCTCAGCCTCCTCG 271.000.00-----1.00--------------------
...................................................................................................................................................................................................................................GACCCTCCTGCCTCAGCCTCCTGCCC 261.000.00-----1.00--------------------
..............................................................................................................................................................................AGATGGATTTTTGCTATGTTGTA..................................................... 231.000.00----------------------1.00---
...............................................................................ATGGACTGAGTTATTATCT........................................................................................................................................................ 191.000.001.00-------------------------
...........................................................................ACTCAGTCCATCATT................................................................................................................................................................ 1590.220.22-------------------------0.22