ID: uc010hev.2_intron_9_0_chr3_17349627_r.5p
GENE: (14)
chr3:17413367-17413616-


(1)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(2)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(5)
LIVER 		(3)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTTTACATGCACTTGAACAGACTAGAAATTGCACCACAGATATATGGGTTGTAAGTATTAAAGTTCTTTGTTTGTTTGTTTGTTTTTTGAGACAGAGTCTCCATCTTTCACCCATGCTAGAGTGCAGTGGCATGATCTTGGCTTACTGCAAACTCTGCCCCCTGGGCTCAAGCGATCCTCCCATCTCAGCTTCCCAAGTAGCTGGTACCACAGACGCGTGCCACCAAGCCCAGCTAAGTTTTTGTAGTTT
............................................((((.((.(((......((..((((((((................)))))))).))....))).)))))).......((((....)))).....................................................................................................................
............................................45..........................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925PAZD5SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................TCTTTGTTTGTTTGTTTGTTTTATCC................................................................................................................................................................263.000.003.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTTGC...............................................................................................................................................................283.000.001.002.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTGAC..............................................................................................................................................................283.000.001.002.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTACTC................................................................................................................................................................263.000.00-3.00----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTCCCC................................................................................................................................................................273.000.002.001.00----------------------------------
.............TGAACAGACTAGAAATTGCACCA......................................................................................................................................................................................................................2313.003.00------------2.00---1.00-------------------
..............................................................GTTCTTTGTTTGTTTGTTTGTTTTCCTC................................................................................................................................................................282.000.00-2.00----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTCCTC.................................................................................................................................................................262.000.002.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTCTTG................................................................................................................................................................272.000.002.00-----------------------------------
.................................................TGTAAGTATTAAAGTAGA.......................................................................................................................................................................................182.000.00--------2.00---------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTTTCT................................................................................................................................................................252.000.002.00-----------------------------------
..............................................................................................................................................................................................................ACCACAGACGCGTGCCACTAC.......................212.000.002.00-----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTGG...............................................................................................................................................................272.000.001.001.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTCCCC................................................................................................................................................................262.000.002.00-----------------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTTTCG................................................................................................................................................................252.000.002.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTGTCC.......................................................................................................................................................................201.000.00-----1.00------------------------------
.............TGAACAGACTAGAAATTGCACCACAGAT.................................................................................................................................................................................................................2811.001.00-------1.00----------------------------
.............................................................AGTTCTTTGTTTGTTTGTTTGTTTC....................................................................................................................................................................251.000.00-1.00----------------------------------
...............AACAGACTAGAAATTGCACCACAGATATATG............................................................................................................................................................................................................3111.001.00------------------------------1.00-----
........GCACTTGAACAGACTAGAAATTGCA.........................................................................................................................................................................................................................2511.001.00---------1.00--------------------------
.................................................................................................................ATGCTAGAGTGCAGTGGATA.....................................................................................................................201.000.001.00-----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTACTG................................................................................................................................................................261.000.001.00-----------------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTTTGTTCG.............................................................................................................................................................281.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTGTTT...................................................................................................................................................................241.000.00-1.00----------------------------------
...........................................................................................................TCACCCATGCTAGAGTGCAGCGGC.......................................................................................................................241.000.001.00-----------------------------------
............TTGAACAGACTAGAAATTGCAC........................................................................................................................................................................................................................2211.001.00-----------1.00------------------------
............................................................................................................................................................................................................................CCACCAAGCCCAGCTAGCGT..........201.000.00-----1.00------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTCTTC.................................................................................................................................................................261.000.00-1.00----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTTTTG..............................................................................................................................................................291.000.001.00-----------------------------------
..............................................................GTTCTTTGTTTGTTTGTTTGTTTTTCCC................................................................................................................................................................281.000.001.00-----------------------------------
...............AACAGACTAGAAATTGCA.........................................................................................................................................................................................................................1821.001.00-----------------------1.00------------
........GCACTTGAACAGACTAGAAATTGCACCACAGAT.................................................................................................................................................................................................................3311.001.00-------------------------------1.00----
...........................................................................................................................................................TGCCCCCTGGGCTCAAGCGATCCTCT.....................................................................261.000.00-1.00----------------------------------
.............TGAACAGACTAGAAATTGCACC.......................................................................................................................................................................................................................2211.001.00---------1.00--------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTCTT.................................................................................................................................................................261.000.00-1.00----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTCCC...............................................................................................................................................................281.000.00-1.00----------------------------------
................................................................................................................................................ACTGCAAACTCTGCCCCCTGGGTGG.................................................................................251.000.00-1.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTCAC.................................................................................................................................................................251.000.001.00-----------------------------------
............................................................................................................................CAGTGGCATGATCTTGGCTGAAA.......................................................................................................231.000.00-------------1.00----------------------
.............................................................AGTTCTTTGTTTGTTTGTTTGTTTTTGG.................................................................................................................................................................281.000.00------------------1.00-----------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTGGAG..............................................................................................................................................................281.000.001.00-----------------------------------
.................................................................................................................................................................................................................ACAGACGCGTGCCACCAAGCTC...................221.000.00-1.00----------------------------------
.................................................................................................................................................................................CTCCCATCTCAGCTTCGA.......................................................181.000.00-------------------1.00----------------
.................................................................................................................................................................................................................ACAGACGCGTGCCACCAAGCCCGGCT...............261.000.001.00-----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTGCC..............................................................................................................................................................281.000.001.00-----------------------------------
..............................................................GTTCTTTGTTTGTTTGTTTGTTTTGCTC................................................................................................................................................................281.000.001.00-----------------------------------
............TTGAACAGACTAGAAATTGCACAA......................................................................................................................................................................................................................2411.001.00----------------------1.00-------------
.............................................................AGTTCTTTGTTTGTTTGTTTGC.......................................................................................................................................................................221.000.001.00-----------------------------------
...........................................................AAAGTTCTTTGTTTGTTA.............................................................................................................................................................................181.000.00-----1.00------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTACTT.................................................................................................................................................................261.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTGCGG..............................................................................................................................................................291.000.00-1.00----------------------------------
...TACATGCACTTGAACAGACTAGAAA..............................................................................................................................................................................................................................2511.001.00-------1.00----------------------------
..........ACTTGAACAGACTAGAAATTGCACCA......................................................................................................................................................................................................................2611.001.00-----------1.00------------------------
........GCACTTGAACAGACTAGAA...............................................................................................................................................................................................................................1921.001.00---------------------------1.00--------
................................................................TCTTTGTTTGTTTGTTTGTTTTCTT.................................................................................................................................................................251.000.00-1.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTGCT..............................................................................................................................................................281.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTTGCT..............................................................................................................................................................291.000.00-1.00----------------------------------
.............................................................AGTTCTTTGTTTGTTTGTTTGTTTTTC..................................................................................................................................................................271.000.001.00-----------------------------------
...........................................................................................................................................................TGCCCCCTGGGCTCAAGTGAG..........................................................................211.000.001.00-----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTCTTA................................................................................................................................................................261.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTGAGACGG...........................................................................................................................................................321.000.001.00-----------------------------------
.............................................................AGTTCTTTGTTTGTTTGTTTGTTTTTT..................................................................................................................................................................2711.001.001.00-----------------------------------
.............................................................AGTTCTTTGTTTGTTTGTTTGTTTTGG..................................................................................................................................................................271.000.00-1.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTCTTG...................................................................................................................................................................231.000.001.00-----------------------------------
.............................................................................................................................AGTGGCATGATCTTGGCGCAG........................................................................................................211.000.00-1.00----------------------------------
...............................................................TTCTTTGTTTGTTTGTTCGAG......................................................................................................................................................................211.000.001.00-----------------------------------
..............................................................GTTCTTTGTTTGTTTGTTTGTTTTTGG.................................................................................................................................................................271.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTCTGT................................................................................................................................................................271.000.001.00-----------------------------------
...........................................................................................................TCACCCATGCTAGAGTGCAGCGG........................................................................................................................231.000.001.00-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTGCT...............................................................................................................................................................281.000.00-1.00----------------------------------
.............TGAACAGACTAGAAATTGCACCACAGA..................................................................................................................................................................................................................2711.001.00-------1.00----------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTCT...............................................................................................................................................................271.000.00-1.00----------------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTTTTGCC..............................................................................................................................................................271.000.001.00-----------------------------------
.............TGAACAGACTAGAAATTGCAC........................................................................................................................................................................................................................2111.001.00-----------------1.00------------------
..........................................................................................................................TGCAGTGGCATGATCTTGGAAAA.........................................................................................................231.000.00--------------------1.00---------------
.............................................................AGTTCTTTGTTTGTTTGTTTGCTTG....................................................................................................................................................................251.000.001.00-----------------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTACTG................................................................................................................................................................251.000.001.00-----------------------------------
..........................................................................................................................TGCAGTGGCATGATCTTGGAT...........................................................................................................211.000.00-------------------------1.00----------
................................................................TCTTTGTTTGTTTGTTTGTTTTTTTGC...............................................................................................................................................................271.000.00-1.00----------------------------------
.................................................................CTTTGTTTGTTTGTTTGTTTTTTTGC...............................................................................................................................................................261.000.00-1.00----------------------------------
................................................................TCTTTGTTTGTTTGTTTGTTTTACT.................................................................................................................................................................251.000.00-1.00----------------------------------
..............................................................GTTCTTTGTTTGTTTGTTTGTTTTTTG.................................................................................................................................................................2720.500.500.50-----------------------------------
......................................................................................................................................................AACTCTGCCCCCTGGGCTCAAGCG............................................................................2420.500.500.50-----------------------------------
...............................................................TTCTTTGTTTGTTTGTTTGTTTTTTGAG...............................................................................................................................................................2860.500.500.17----0.33------------------------------
......................................................................................................................................................................................................TAGCTGGTACCACAGACGC.................................1930.330.33---------------------------------0.33--
......................................................................................................................................................................................................TAGCTGGTACCACAGACG..................................1830.330.33----------------------------------0.33-
...........................................................................................................................................................TGCCCCCTGGGCTCAAGCGA...........................................................................2060.170.17-0.17----------------------------------
................................................................................................................................GGCATGATCTTGGCTTACTGCAAACTCTG.............................................................................................2970.140.14-----------------------------------0.14

Antisense strand
CTTTACATGCACTTGAACAGACTAGAAATTGCACCACAGATATATGGGTTGTAAGTATTAAAGTTCTTTGTTTGTTTGTTTGTTTTTTGAGACAGAGTCTCCATCTTTCACCCATGCTAGAGTGCAGTGGCATGATCTTGGCTTACTGCAAACTCTGCCCCCTGGGCTCAAGCGATCCTCCCATCTCAGCTTCCCAAGTAGCTGGTACCACAGACGCGTGCCACCAAGCCCAGCTAAGTTTTTGTAGTTT
............................................((((.((.(((......((..((((((((................)))))))).))....))).)))))).......((((....)))).....................................................................................................................
............................................45..........................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925PAZD5SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................AGATGGGAGGATCGCTTGAGCCCAGG................................................................ 2608.008.00--3.002.002.00---------------------1.00---------
....................................................................................................................................................................AGATGGGAGGATCGCTTGAGCC................................................................ 2205.005.00--2.001.002.00-------------------------------
..................................................................................................................................................................................................................TTAGCTGGGCTTGGTGGCACGCGTCTG............. 2712.002.00-2.00----------------------------------
...................................................................................................................................................................AGATGGGAGGATCGCTTGAGCCC................................................................ 2302.002.00---1.001.00-------------------------------
.................................................................................................................................................................AGATGGGAGGATCGCTTGAGCCCAG................................................................ 2502.002.00---2.00--------------------------------
.......................................................................................................................................................................................................................GCGTGCCACCAAGCCCAGCTCTG............ 232.000.002.00-----------------------------------
..................................................................................................................................................................TGGGCTCAAGCGATCCTCCCAAG................................................................. 232.000.00------2.00-----------------------------
..............................................................................................................CCCATGCTAGAGTGCAGTGGCAA..................................................................................................................... 231.000.00-----------------------------1.00------
......................................................................................................................................................................................................................CGCGTGCCACCAAGCCCAGCTACTG........... 251.000.001.00-----------------------------------
...........................................................................................................................................................................................................................TTAGCTGGGCTTGGTGGC............. 1801.001.00---------------1.00--------------------
.....................................................................................................................................................................ATGGGAGGATCGCTTGAGC.................................................................. 1901.001.00----------1.00-------------------------
........................................................................................................................................................................AGATGGGAGGATCGCTTG................................................................ 1801.001.00----------1.00-------------------------
.......................................................................................................................................................................................TCTCAGCTTCCCAAGTGCG................................................ 191.000.00------------------------1.00-----------
.................................................................................................................................................................ATGGGAGGATCGCTTGAGCCCAG.................................................................. 2301.001.00--1.00---------------------------------
..........................................................................................................................................................................................................................TGCCACCAAGCCCAGCTAGCGC.......... 221.000.00-1.00----------------------------------
.................................................................................................................................................................................CTCCCATCTCAGCTTCCCACCGA.................................................. 231.000.00---------------------1.00--------------
.................................................................................................................................................................CTGGGCTCAAGCGATCCTCCCATAGGC.............................................................. 271.000.00-1.00----------------------------------
.............................................................................................................................................................CCCCCTGGGCTCAAGCGATCCTGG..................................................................... 241.000.001.00-----------------------------------
......................................................................................................................................................................ATGGGAGGATCGCTTGAG.................................................................. 1801.001.00--1.00---------------------------------
.................................................................................................................................................................................CTCCCATCTCAGCTTCCCACACT.................................................. 231.000.00-1.00----------------------------------
........................................................................................................................AGTGCAGTGGCATGATCTTGGCTT.......................................................................................................... 241.000.00------1.00-----------------------------
.........................................................................................................................................................................................................................GTGCCACCAAGCCCATCTG.............. 191.000.00----------------------------1.00-------
.................................................................................................................................................................................TGGGAAGCTGAGATGGGAG...................................................... 1901.001.00--------------1.00---------------------
....................................................................................................................................................................GGCTCAAGCGATCCTCCCATACGG.............................................................. 241.000.00-1.00----------------------------------
.......................................................................................................................................................ACTCTGCCCCCTGGGCCG................................................................................. 181.000.00--------------------------------1.00---