ID: uc010goc.1_intron_23_0_chr21_40630599_r.5p
GENE: BRWD1(2)
chr21:40636186-40636435-


(3)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(7)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
AAATTCTGCAGATGAACATTTGATTCCACAGCTGGGCTATGTGGCAACAAGTAAGTGCAGTCTTTTTTTTTTTTTTTTTTTAAAGTTGTACTTGAATATTTTAAAGTATAATATAAATAATTTCCTTACCTTTAGATCCCCAATTATTAATATTTTGCAATATTTGTTTTATTATTTTTTTTCTGTGTATTGTTTTGAACCATTTAACTTCTGGACCTCATGTACCATTTACCTCTAAATAAGAACGACA
...................................................(((((((((.((((................)))))))))))))............................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR343335SRR343334SRR189787DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCCC.........................................................................................................................................................................2640.000.0032.008.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCCC.......................................................................................................................................................................2840.000.0031.009.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCCC...........................................................................................................................................................................2436.000.0028.008.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCCC......................................................................................................................................................................2935.000.0027.008.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCCC........................................................................................................................................................................2733.000.0026.007.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCCC.....................................................................................................................................................................3029.000.0020.009.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCCC..........................................................................................................................................................................2528.000.0025.003.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATT...................................................................................................................................................................2723.000.004.00-10.007.00--1.00-1.00----------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTGAG..........................................................................................................................................................................2521.000.0014.007.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCCC............................................................................................................................................................................2319.000.0014.005.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCC.........................................................................................................................................................................2617.000.0015.002.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCGAG.....................................................................................................................................................................2716.000.0011.005.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCGAG......................................................................................................................................................................2914.000.0012.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCC........................................................................................................................................................................2712.000.0010.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCC...........................................................................................................................................................................2411.000.0010.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTCCC.............................................................................................................................................................................2211.000.008.003.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCCCC......................................................................................................................................................................2910.000.007.003.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCGAG.......................................................................................................................................................................2810.000.006.004.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTCA..................................................................................................................................................................2810.000.00--3.007.00---------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTC.........................................................................................................................................................................2610.000.009.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCC..........................................................................................................................................................................2510.000.009.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCCCC.....................................................................................................................................................................309.000.005.004.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTC.......................................................................................................................................................................289.000.005.004.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCCCC........................................................................................................................................................................279.000.006.003.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCC......................................................................................................................................................................298.000.008.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCCCC.......................................................................................................................................................................288.000.006.002.00-----------------------
..........................................................................................CTTGAATATTTTAAACTGT.............................................................................................................................................198.000.00-----8.00-------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTGGG......................................................................................................................................................................297.000.004.003.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCC.......................................................................................................................................................................287.000.007.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCGAG.....................................................................................................................................................................307.000.006.001.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATTC..................................................................................................................................................................287.000.001.00-3.002.001.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCCCC..........................................................................................................................................................................257.000.007.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCCCT.........................................................................................................................................................................266.000.006.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTCCCC............................................................................................................................................................................236.000.006.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTGGG.......................................................................................................................................................................286.000.004.002.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATCTG..................................................................................................................................................................286.000.00--3.002.00----1.00----------------
.......................................................TGCAGTCTTTTTTTTTTTTCC..............................................................................................................................................................................216.000.004.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCGAG........................................................................................................................................................................275.000.004.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCT......................................................................................................................................................................295.000.003.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCC.............................................................................................................................................................................225.000.004.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTGGG.........................................................................................................................................................................265.000.004.00---1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCCCT......................................................................................................................................................................295.000.005.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTCCCC........................................................................................................................................................................255.000.004.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCCCC...........................................................................................................................................................................244.000.004.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTC..........................................................................................................................................................................254.000.003.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCTTG......................................................................................................................................................................294.000.003.00---1.00--------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCGG......................................................................................................................................................................264.000.004.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTTG..................................................................................................................................................................284.000.00--2.001.00----1.00----------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCCCC.........................................................................................................................................................................264.000.003.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTCCCC...............................................................................................................................................................................204.000.003.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTAG......................................................................................................................................................................294.000.002.002.00-----------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTCGAG.......................................................................................................................................................................264.000.004.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCT............................................................................................................................................................................234.000.003.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCTG........................................................................................................................................................................274.000.004.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCTG.......................................................................................................................................................................284.000.003.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCTTG........................................................................................................................................................................273.000.002.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTTAG.....................................................................................................................................................................303.000.001.002.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAACAAG..................................................................................................................................................................283.000.00--1.001.00----1.00----------------
.........................................................CAGTCTTTTTTTTTTTTTCGAG...........................................................................................................................................................................223.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCCCT...........................................................................................................................................................................243.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCGAG.........................................................................................................................................................................263.000.002.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCTT.........................................................................................................................................................................263.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTGGAG.....................................................................................................................................................................303.000.001.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTCGAG............................................................................................................................................................................233.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCTTG.......................................................................................................................................................................283.000.002.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTC........................................................................................................................................................................273.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTGGG..........................................................................................................................................................................253.000.001.002.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTGGG.....................................................................................................................................................................303.000.002.001.00-----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTTC..................................................................................................................................................................283.000.00--1.00-1.00-1.00------------------
..........................................................................................CTTGAATATTTTAAACTTT.............................................................................................................................................193.000.00-----3.00-------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCTGG.....................................................................................................................................................................273.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTCGAG................................................................................................................................................................................193.000.003.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTAG.......................................................................................................................................................................2813.001.002.001.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAGG......................................................................................................................................................................263.000.003.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTCG.......................................................................................................................................................................262.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTAG...........................................................................................................................................................................242.000.001.001.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCGGT.....................................................................................................................................................................272.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTGGG........................................................................................................................................................................272.000.002.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAATT....................................................................................................................................................................282.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCT.........................................................................................................................................................................262.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTCTTC............................................................................................................................................................................232.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTCTCC............................................................................................................................................................................232.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTCCC................................................................................................................................................................................192.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTCTG................................................................................................................................................................................192.000.002.00------------------------
................................TGGGCTATGTGGCAACAA........................................................................................................................................................................................................1812.002.00----------2.00--------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCTTT........................................................................................................................................................................272.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCTG..........................................................................................................................................................................252.000.001.001.00-----------------------
........................................................GCAGTCTTTTTTTTTTTTTTTCCC..........................................................................................................................................................................242.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTGA...........................................................................................................................................................................242.000.002.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTCTCC...........................................................................................................................................................................222.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTTCG.....................................................................................................................................................................302.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCGAG...........................................................................................................................................................................242.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCTCC......................................................................................................................................................................292.000.001.001.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCCTT.....................................................................................................................................................................272.000.002.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTAA..................................................................................................................................................................282.000.00--2.00----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCGAG..........................................................................................................................................................................252.000.002.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTCGAG........................................................................................................................................................................252.000.002.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAATTC...................................................................................................................................................................292.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTAG........................................................................................................................................................................272.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCTTT..........................................................................................................................................................................252.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCCCT........................................................................................................................................................................272.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCTCC........................................................................................................................................................................272.000.001.001.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCTTG..........................................................................................................................................................................252.000.001.001.00-----------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTCGAG.....................................................................................................................................................................282.000.002.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTTC.....................................................................................................................................................................302.000.002.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAACAG..................................................................................................................................................................282.000.00--2.00----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATACC....................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCTCA......................................................................................................................................................................291.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCTAC.....................................................................................................................................................................271.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAACCG...................................................................................................................................................................271.000.00------1.00------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTCGCC.......................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTGGG...........................................................................................................................................................................241.000.001.00------------------------
...TTCTGCAGATGAACATTTGATTCCACA............................................................................................................................................................................................................................2711.001.00----------------1.00--------
...............................................................TTTTTTTTTTTTTTTTTTAAAGTTGAGG...............................................................................................................................................................281.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCTTC...........................................................................................................................................................................241.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATTA..................................................................................................................................................................281.000.00--1.00----------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTCCGG.....................................................................................................................................................................281.000.001.00------------------------
...............................................................................................................................................................ATATTTGTTTTATTATTTTTTTTCTGTA...............................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCTCT......................................................................................................................................................................291.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAAAT....................................................................................................................................................................281.000.00-1.00-----------------------
......................................................................................................................................................................TTTTATTATTTTTTTTCTGTCC..............................................................221.000.00-------------1.00-----------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCTGA.........................................................................................................................................................................261.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTGGGC.....................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTGGT.......................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCACC......................................................................................................................................................................291.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTT......................................................................................................................................................................291.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCGAC.......................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTAAAG..........................................................................................................................................................................251.000.00----1.00--------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTACCG.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCCGG...........................................................................................................................................................................241.000.001.00------------------------
...............................................................................................................................................................ATATTTGTTTTATTATTTTTTTTCCGTG...............................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCG.............................................................................................................................................................................221.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATCAG..................................................................................................................................................................281.000.00--1.00----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCTTC.......................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCTT........................................................................................................................................................................271.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATATG..................................................................................................................................................................281.000.00--1.00----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTTG.....................................................................................................................................................................301.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTCCCT.......................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTATC.....................................................................................................................................................................301.000.00-1.00-----------------------
.........AGATGAACATTTGATTCTCA.............................................................................................................................................................................................................................201.000.00-----1.00-------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCCAG.........................................................................................................................................................................261.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAGTTATTT...............................................................................................................................................................311.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTGGAG..........................................................................................................................................................................251.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAAACT..................................................................................................................................................................281.000.00--1.00----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATTG..................................................................................................................................................................281.000.00--1.00----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAGTTTTT................................................................................................................................................................301.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTAAAGGG...................................................................................................................................................................321.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATGTG....................................................................................................................................................................281.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATCG...................................................................................................................................................................271.000.00------1.00------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTTCT.....................................................................................................................................................................301.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAGAGC....................................................................................................................................................................281.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAACGG..................................................................................................................................................................281.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAACCT..................................................................................................................................................................281.000.00----1.00--------------------
.............................................................................................................................................................CAATATTTGTTTTATTATTTTTTTTCTGTGTA.............................................................3211.001.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTGTC......................................................................................................................................................................291.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTGACC......................................................................................................................................................................271.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAACCCC..................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTACCC............................................................................................................................................................................231.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCTTT.......................................................................................................................................................................281.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCGGC.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTACG...........................................................................................................................................................................241.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTGGG.............................................................................................................................................................................221.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCTC.........................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCCCA..........................................................................................................................................................................251.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATGC.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTGAGG.....................................................................................................................................................................301.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTGTTG...............................................................................................................................................................................201.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCA............................................................................................................................................................................231.000.001.00------------------------
..............................................................................................................................................................AATATTTGTTTTATTATTTTTTTTCTGT................................................................2811.001.00-1.00-----------------------
........................................................GCAGTCTTTTTTTTTTTTTTTTTTTCCC......................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCTCC..........................................................................................................................................................................251.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTACTC.....................................................................................................................................................................271.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTACTT.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCG.........................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCT.......................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTAG.....................................................................................................................................................................301.000.001.00------------------------
...........................ACAGCTGGGCTATGTGGC.............................................................................................................................................................................................................1811.001.00------------------1.00------
..............AACATTTGATTCCACAGCTGGGT.....................................................................................................................................................................................................................231.000.00---------------------1.00---
.......................................................TGCAGTCTTTTTTTTTTTTTTTTGAA.........................................................................................................................................................................261.000.001.00------------------------
.....................GATTCCACAGCTGGGCTATGTGT..............................................................................................................................................................................................................231.000.00--------------1.00----------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTAGG.........................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCCG.......................................................................................................................................................................281.000.001.00------------------------
......................................................................................................................................................................TTTTATTATTTTTTTTCTCCAT..............................................................221.000.00--1.00----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAGC.....................................................................................................................................................................271.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATC...................................................................................................................................................................271.000.00------1.00------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTCC.....................................................................................................................................................................301.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCTT...........................................................................................................................................................................241.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTGGC.....................................................................................................................................................................301.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTGGAA.......................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCTG.....................................................................................................................................................................301.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAAAC....................................................................................................................................................................281.000.001.00------------------------
..................................................................................................................................................................TTTGTTTTATTATTTTTTTTCTCCT...............................................................251.000.00----1.00--------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTCTG......................................................................................................................................................................271.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTATC......................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCCCT.....................................................................................................................................................................301.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCTTG.........................................................................................................................................................................261.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCCG......................................................................................................................................................................261.000.001.00------------------------
...............................................................................................................................................................ATATTTGTTTTATTATTTTTTTCCTG.................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTCTCC.........................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTCTC.............................................................................................................................................................................221.000.001.00------------------------
........................................................................................TACTTGAATATTTTAAATTTT.............................................................................................................................................211.000.00-----1.00-------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCCGG........................................................................................................................................................................271.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTCAGC.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCCTT..........................................................................................................................................................................251.000.001.00------------------------
.........................................................................................ACTTGAATATTTTAAACTTT.............................................................................................................................................201.000.00-----1.00-------------------
.......................................................TGCAGTCTTTTTTTTTTTTAAAG............................................................................................................................................................................231.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCTG......................................................................................................................................................................291.000.001.00------------------------
........................................................GCAGTCTTTTTTTTTTTTTTTTTCC.........................................................................................................................................................................251.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATTT.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTGAT...........................................................................................................................................................................241.000.00-1.00-----------------------
........................................................................................TACTTGAATATTTTAAACTGT.............................................................................................................................................211.000.00-----1.00-------------------
.......................................................TGCAGTCTTTTTTTTTCGAG...............................................................................................................................................................................201.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTGGG.......................................................................................................................................................................261.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAATCC..................................................................................................................................................................281.000.00---1.00---------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTCG..................................................................................................................................................................281.000.00--1.00----------------------
........................................................GCAGTCTTTTTTTTTTTTTTTTTCCC........................................................................................................................................................................261.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAACC...................................................................................................................................................................271.000.00------1.00------------------
......................................................GTGCAGTCTTTTTTTTTTTTG...............................................................................................................................................................................211.000.00----1.00--------------------
.....................................................AGTGCAGTCTTTTTTTTTTTTTTTTTTCTA.......................................................................................................................................................................301.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAGTCC...................................................................................................................................................................291.000.001.00------------------------
.........................................................................................ACTTGAATATTTTAAACTGT.............................................................................................................................................201.000.00-----1.00-------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAAAAT..................................................................................................................................................................281.000.00---1.00---------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCCTC.......................................................................................................................................................................281.000.00-1.00-----------------------
...........................................................GTCTTTTTTTTTTTTTTTTTTTCGC......................................................................................................................................................................251.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTCTCC.....................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTCGGA........................................................................................................................................................................271.000.00-1.00-----------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTGGGG.......................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTGTC.......................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTAGT.....................................................................................................................................................................301.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCA......................................................................................................................................................................291.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCCTG.....................................................................................................................................................................301.000.00----1.00--------------------
.................................................................TTTTTTTTTTTTTTTTAAAGTTGGAT...............................................................................................................................................................261.000.00------1.00------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTAG..........................................................................................................................................................................251.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATCC.....................................................................................................................................................................271.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAGTG....................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCCT.......................................................................................................................................................................281.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAGTCAAC................................................................................................................................................................301.000.00----1.00--------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAGTC.....................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTGT......................................................................................................................................................................291.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAAAGG...................................................................................................................................................................291.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAGCCAC.................................................................................................................................................................291.000.00--1.00----------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAACG...................................................................................................................................................................271.000.00---1.00---------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATTGG..................................................................................................................................................................281.000.00------1.00------------------
.........................................................................................................................................................................................TGTATTGTTTTGAACTCTG..............................................191.000.00-----------------1.00-------
.....................................................AGTGCAGTCTTTTTTTTTTTTTCTC............................................................................................................................................................................251.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTA........................................................................................................................................................................2711.001.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTGAA............................................................................................................................................................................231.000.001.00------------------------
........................................................GCAGTCTTTTTTTTTTTTTCCC............................................................................................................................................................................221.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCGC.....................................................................................................................................................................301.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCGA.......................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTGAC.........................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTGT.......................................................................................................................................................................281.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTCGGG......................................................................................................................................................................291.000.00-1.00-----------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAGTT....................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTGAA...........................................................................................................................................................................241.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCCT........................................................................................................................................................................271.000.001.00------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTCTCC.......................................................................................................................................................................261.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTACCC........................................................................................................................................................................271.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTGTTT.........................................................................................................................................................................261.000.00----1.00--------------------
.......................................................................................................................................................................TTTATTATTTTTTTTCTATC...............................................................201.000.00------1.00------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTAAA.........................................................................................................................................................................261.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAAGTTTTGG...............................................................................................................................................................311.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTCCG...........................................................................................................................................................................241.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTAC........................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTCTTG................................................................................................................................................................................191.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTCTT.....................................................................................................................................................................301.000.00-1.00-----------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTCGGG.....................................................................................................................................................................301.000.001.00------------------------
.......................................................................................................................................................................TTTATTATTTTTTTTCTGGGG..............................................................211.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTCCG........................................................................................................................................................................271.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTAAG.......................................................................................................................................................................281.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAAATTC..................................................................................................................................................................301.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATCTT....................................................................................................................................................................281.000.001.00------------------------
........................................................GCAGTCTTTTTTTTTTTTTTTTTTCCCG......................................................................................................................................................................281.000.001.00------------------------
............................................................TCTTTTTTTTTTTTTTTTTTTAAATCTA..................................................................................................................................................................281.000.00--1.00----------------------
........................................................GCAGTCTTTTTTTTTTTTTTTTTTTCC.......................................................................................................................................................................271.000.001.00------------------------
......................................................GTGCAGTCTTTTTTTTTTTTTTCT............................................................................................................................................................................241.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATT......................................................................................................................................................................261.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTATG......................................................................................................................................................................261.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAACCCC..................................................................................................................................................................301.000.001.00------------------------
...............................CTGGGCTATGTGGCAACAA........................................................................................................................................................................................................1911.001.00---------------1.00---------
....................................................AAGTGCAGTCTTTTTTTTTTTTGAG.............................................................................................................................................................................251.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTATATT....................................................................................................................................................................3111.001.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTCCG............................................................................................................................................................................231.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTTTTTTCA.....................................................................................................................................................................301.000.001.00------------------------
........................................................GCAGTCTTTTTTTTTTTTTTCTTT..........................................................................................................................................................................241.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTGG............................................................................................................................................................................231.000.001.00------------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAGGAC....................................................................................................................................................................281.000.001.00------------------------
.......................................................TGCAGTCTTTTTTTTTTTTTGTG............................................................................................................................................................................231.000.00----1.00--------------------
.......................................................TGCAGTCTTTTTTTTTTTTTTTTAAG.........................................................................................................................................................................261.000.00-1.00-----------------------
..ATTCTGCAGATGAACATT......................................................................................................................................................................................................................................1830.330.33-----------------------0.33-
......TGCAGATGAACATTTGA...................................................................................................................................................................................................................................1730.330.33----------------------0.33--
......................................................GTGCAGTCTTTTTTTTTTTTTTTTTT..........................................................................................................................................................................2650.200.200.20------------------------
.........................................................CAGTCTTTTTTTTTTTTTTTTTTTAAA......................................................................................................................................................................2770.140.14---0.14---------------------
..........................................................AGTCTTTTTTTTTTTTTTTTTTTAAAG.....................................................................................................................................................................2790.110.110.11------------------------
.....................................................AGTGCAGTCTTTTTTTTTT..................................................................................................................................................................................1990.110.110.11------------------------

Antisense strand
AAATTCTGCAGATGAACATTTGATTCCACAGCTGGGCTATGTGGCAACAAGTAAGTGCAGTCTTTTTTTTTTTTTTTTTTTAAAGTTGTACTTGAATATTTTAAAGTATAATATAAATAATTTCCTTACCTTTAGATCCCCAATTATTAATATTTTGCAATATTTGTTTTATTATTTTTTTTCTGTGTATTGTTTTGAACCATTTAACTTCTGGACCTCATGTACCATTTACCTCTAAATAAGAACGACA
...................................................(((((((((.((((................)))))))))))))............................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR343335SRR343334SRR189787DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.....................................................AGTGCAGTCTTTTTTCC.................................................................................................................................................................................... 173.000.00-----------2.001.00------------
................................................AAGTAAGTGCAGTCTTTTTG...................................................................................................................................................................................... 202.000.00-------1.00-1.00---------------
...........................................................................................................ATAATATAAATAATTCCTA............................................................................................................................ 191.000.00-------------------1.00-----
................................................AAGTAAGTGCAGTCTTTCTG...................................................................................................................................................................................... 201.000.00-------1.00-----------------
.................................................AGTAAGTGCAGTCTTTGTG...................................................................................................................................................................................... 191.000.00---------1.00---------------
.......................................................................TTTTTTTTTTAAAGTTGTTG............................................................................................................................................................... 201.000.00-------1.00-----------------
..................................................................................................................................................................................................................CTGGACCTCATGTACCGG...................... 181.000.00-------1.00-----------------
.....................................................................................................................................................................................TCTGTGTATTGTTTTGTCA.................................................. 191.000.00--------------------1.00----
................................................AAGTAAGTGCAGTCTTTCCG...................................................................................................................................................................................... 201.000.00-------1.00-----------------
.................................................AGTAAGTGCAGTCTTTCCTG..................................................................................................................................................................................... 201.000.00---------1.00---------------
........................................................................................................ATTATTTATATTATACT................................................................................................................................. 1770.140.14------------------------0.14