ID: uc010gjn.1_intron_13_0_chr20_56847932_r.5p
GENE: PPP4R1L(3)
chr20:56861170-56861419-


(1)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(13)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(1)
OTHER 		(1)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CCACTCACTCGCCTGGAGAAGTATGCTTTCAGCGAGAACACCTTCAACCGGTAAGCCCAACCAGGCCTGTGTATGTTGACAACTCTGTGTTGTGTGCTTTAAGCTGACACTTGGGGCCACTTCTCTGTGACAGCTTTGAGGAGACTTCATGGATGATGAGGTAGGTTGGATACAGATTGTCACCAGGATGCTGGGCTTCTGTCTGAATGGTACCATCTTATTAGGCTTTTTCATTATTTTTGTTATTGTT
...............................................................(((((((((......(((((.....)))))..((.....))..))))...))))).....((((((.((((((.......(((((((.....)))))))))))))..))))))..........................................................................
...............................................................64.................................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189785SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................................TGAGGTAGGTTGGATAGTT...........................................................................1932.000.006.005.001.00-1.001.00-2.002.001.002.00-2.00--1.001.001.00---1.00-1.00---1.00-----1.00-1.001.00----------
....................................................................GTGTATGTTGACAACTCGG...................................................................................................................................................................1917.001.00--2.00-----------1.00-1.00-------------1.001.00--------1.00------
....................................................................GTGTATGTTGACAACTCGGTA.................................................................................................................................................................2115.001.00------2.00--1.00---2.00---------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATAGT............................................................................184.000.002.00------------------------1.00-----------------1.00---
....................................................................GTGTATGTTGACAACTCGGT..................................................................................................................................................................2013.001.00--1.00-1.00------------------------1.00-----------------
............................................................................................................................................................TGAGGTAGGTTGGATGGTT...........................................................................192.000.001.00----1.00-----------------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATAG.............................................................................172.000.00---1.00------------------------1.00------------------
............................................................................................................................................................TGAGGTAGGTTGGATAGTTT..........................................................................202.000.002.00----------------------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATAGTC...........................................................................192.000.001.001.00---------------------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATAGCT...........................................................................191.000.001.00----------------------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATTGGT...........................................................................191.000.00------------------------------------------1.00----
.........................................................................................................................................................TGATGAGGTAGGTTGTGTG..............................................................................191.000.00--------------------------1.00--------------------
....................................................................GTGTATGTTGACAACTCG....................................................................................................................................................................1811.001.00--------------------1.00--------------------------
.....................................................................................................................................................................................................................CATCTTATTAGGCTTATGC..................191.000.00------------------1.00----------------------------
............................................................................................................................................................TGAGGTAGGTTGGATTTTT...........................................................................191.000.001.00----------------------------------------------
....................................................................GTGTATGTTGACAACTCGA...................................................................................................................................................................1911.001.00--------------1.00--------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATGGT............................................................................181.000.00----------------------1.00------------------------
....................................................................GTGTATGTTGACAACTCGTTA.................................................................................................................................................................2111.001.00-----------------1.00-----------------------------
............................................................................................................................................................TGAGGTAGGTTGGATAGTTA..........................................................................201.000.00---------------1.00-------------------------------
.........................................................................................................................................................TGATGAGGTAGGTTGATTG..............................................................................191.000.00------------------------1.00----------------------
....................................................................GTGTATGTTGACAACTC.....................................................................................................................................................................1711.001.00-----1.00-----------------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATGGCT...........................................................................191.000.00-----------1.00-----------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATTGTT...........................................................................191.000.00----1.00------------------------------------------
....................................................................GTGTATGTTGACAACTCTT...................................................................................................................................................................191.000.00--1.00--------------------------------------------
.........................................................................................................................................................TGATGAGGTAGGTTGTA................................................................................171.000.00---------------------------------------1.00-------
............................................................................................................................................................TGAGGTAGGTTGGATAGGT...........................................................................191.000.00-----------1.00-----------------------------------
............................................................................................................................................................TGAGGTAGGTTGGATTTTG...........................................................................191.000.00-1.00---------------------------------------------
......................................................................................................GCTGACACTTGGGGCCACTTCTCTG...........................................................................................................................2511.001.00-------------------------------------1.00---------
....................................................................GTGTATGTTGACAACTCGTT..................................................................................................................................................................2011.001.00--1.00--------------------------------------------
....................................................................................................................................................................................................................................TTTCATTATTTTTGTTATT...1940.250.25---------------------------------------------0.25-

Antisense strand
CCACTCACTCGCCTGGAGAAGTATGCTTTCAGCGAGAACACCTTCAACCGGTAAGCCCAACCAGGCCTGTGTATGTTGACAACTCTGTGTTGTGTGCTTTAAGCTGACACTTGGGGCCACTTCTCTGTGACAGCTTTGAGGAGACTTCATGGATGATGAGGTAGGTTGGATACAGATTGTCACCAGGATGCTGGGCTTCTGTCTGAATGGTACCATCTTATTAGGCTTTTTCATTATTTTTGTTATTGTT
...............................................................(((((((((......(((((.....)))))..((.....))..))))...))))).....((((((.((((((.......(((((((.....)))))))))))))..))))))..........................................................................
...............................................................64.................................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189785SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................GTGACAGCTTTGAGGAG........................................................................................................... 172.000.00-------------------1.00------------------1.00--------
....................................................................................CTGTGTTGTGTGCTTTACCTT................................................................................................................................................. 211.000.00----------------------------------1.00------------
......................................................GCCCAACCAGGCCTGGGT.................................................................................................................................................................................. 181.000.00--------------------------------1.00--------------
..........................................................................................................................................................GATGAGGTAGGTTGGTAAG............................................................................. 191.000.00---1.00-------------------------------------------
.....................................ACACCTTCAACCGGTGTT................................................................................................................................................................................................... 181.000.00-----------------------------------------1.00-----
.......................................................................................................................................................GATGATGAGGTAGGTTGTAAA.............................................................................. 211.000.00---1.00-------------------------------------------
........................................................................................................................................................CAACCTACCTCATCAT.................................................................................. 1630.330.33--------------------------------------------0.33--
........................................................................................................................................................ATGATGAGGTAGGTTGG................................................................................. 170.330.00--------------------------------------------0.33--
...............................................................................................................................................................TGTATCCAACCTACC............................................................................ 1560.170.17----------------------------------------------0.17