ID: uc010gcd.1_intron_6_0_chr20_10625905_r
GENE: JAG1(8)
chr20:10625855-10626053-


(1)
AGO2.ip 		(3)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(3)
HELA 		(4)
LIVER 		(1)
RRP40.ip 		(47)
SKIN 		(2)
XRN.ip

Sense strand
CTTCTACTGTGACTGTAAAAATGGGTGGAAAGGAAAGACCTGCCACTCACGTAAGTGGTAGTTGGCCTTGGATGCTATCTCTGGGACCCTTCCCTCTGTCTTCTGTGGGAGGGGGCCACTGGGACTCACACTGAAATATTTTCCTCCAGGTGACAGTCAGTGTGATGAGGCCACGTGCAACAACGGTGGCACCTGCTAT
..................................................((.(((..(((.((((((..((.......))..)).((((((((............)))))))))))))))..))).))......................................................................
..................................................51................................................................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................TGGGACTCACACTGAAATATTTTCCTCCAGA.................................................31130.001.00-1.002.004.002.00-2.003.003.00-2.00-1.00-----1.001.00--1.00-2.001.00---1.00--------1.00-----1.00------1.00---------------
..............................................................................................................................CACACTGAAATATTTTCCTCCAGA.................................................24125.0015.007.001.001.001.00--------1.001.001.00-----2.001.00---------2.001.00-1.00-----1.00-------1.001.00----------1.00---1.00--
..............................................................................................................................CACACTGAAATATTTTCCTCCAG..................................................23115.0015.00-1.00--1.00-2.00--1.001.001.00--1.00-------1.00---1.00-----1.00------1.00----------1.00------1.001.00--------
......................................................................................................................CTGGGACTCACACTGAAATATTTTCCTCCAGA.................................................32113.002.00-------1.00-2.00-2.00------1.00--1.00-1.00--1.00-1.00----------------1.00-------1.00---------1.00---
.......................................................................................................................TGGGACTCACACTGAAATATTTTCCTCCAGAA................................................3218.001.00-2.00-1.002.00------1.00-----1.00-----------------------------1.00-------------------
..............................................................................................................................CACACTGAAATATTTTCCTCCAGAA................................................2517.0015.00--3.00---------1.00----------1.00--------------------------------1.00----1.00-----
..................................................GTAAGTGGTAGTTGGCCTTGGATGCTATCTCTGGGACCCTTCCCTCTGTCTTCTGTGGGAGGGGGCCACTGGGACTCACACTGAAATATTTTCCTCCAG..................................................9916.006.00-----6.00-------------------------------------------------------------
.............................................................................................................................TCACACTGAAATATTTTCCTCCAGA.................................................2515.002.00-------1.00--------------------1.001.001.00----------1.00-------------------------
......................................................................................................................CTGGGACTCACACTGAAATATTTTCCTCCAGAA................................................3315.002.00-1.00--1.00---------1.002.00---------------------------------------------------
..............................AGGAAAGACCTGCCACTC.......................................................................................................................................................1814.004.003.00------------------------------------1.00-----------------------------
........................................................................................................................................................ACAGTCAGTGTGATGAGG.............................1812.002.00---------------------------2.00---------------------------------------
......................................................................................................................................................TGACAGTCAGTGTGATGAGGCC...........................2212.002.00----------------2.00--------------------------------------------------
......................................................................................................................CTGGGACTCACACTGAAATATTTTCCTCCAG..................................................3112.002.00------1.00----------1.00-------------------------------------------------
.......................................................................................................................TGGGACTCACACTGAAATATTTTCCTCCAGAAG...............................................3312.001.00---------------------------------2.00---------------------------------
.............................................................................................................................TCACACTGAAATATTTTCCTCCAG..................................................2412.002.00---------1.00-----1.00---------------------------------------------------
........................................................................................................................GGGACTCACACTGAAATATTTTCCTCCAGA.................................................302.000.00-2.00-----------------------------------------------------------------
..............................AGGAAAGACCTGCCAAAGG......................................................................................................................................................191.000.00-----------------------------------------------------------------1.00-
.....................................................................................................................ACTGGGACTCACACTGAAATATTTTCCTCCAG..................................................3211.001.00--1.00----------------------------------------------------------------
..................................................GTAAGTGGTAGTTGGCCTTGGA...............................................................................................................................2211.001.00-----------------------------------------------------------1.00-------
...............................................................................................................................ACACTGAAATATTTTCCTCCAG..................................................2211.001.00-------------------------1.00-----------------------------------------
.........TGACTGTAAAAATGGGTGGAAAGG......................................................................................................................................................................2411.001.00----------------1.00--------------------------------------------------
.......................................................................................CCTTCCCTCTGTCTTCTGTGGG..........................................................................................2211.001.00-------------1.00-----------------------------------------------------
.......................GGTGGAAAGGAAAGACCTGC............................................................................................................................................................2011.001.001.00------------------------------------------------------------------
................................................................................................................GGGCCACTGGGACTCACACTGAAAT..............................................................2511.001.00-------------------------------------------1.00-----------------------
....................................................................................................................CACTGGGACTCACACTGAAATATTTTCCTCCAG..................................................3311.001.00-------------------1.00-----------------------------------------------
......CTGTGACTGTAAAAATGGGTGG...........................................................................................................................................................................2211.001.00-1.00-----------------------------------------------------------------
..............................................................................................................................CACACTGAAATATTTTCCTCCATAG................................................251.000.00----------1.00--------------------------------------------------------
...........................................................................................................................................................GTCAGTGTGATGAGGCCACGTGCAACAACGGT............3211.001.00------------1.00------------------------------------------------------
..............................................................................................................................CACACTGAAATATTTTCCTCCAGAAA...............................................2611.0015.00---1.00---------------------------------------------------------------
.........TGACTGTAAAAATGGGTGGAAAGGAAAGACC...............................................................................................................................................................3111.001.00------------------------------1.00------------------------------------
.........TGACTGTAAAAATGGGTGGAAA........................................................................................................................................................................2211.001.00----------------------------------------------1.00--------------------
..............................................................................................................................................CCTCCAGGTGACAGTCAGTGTGATGA...............................2611.001.00-----------------------------------1.00-------------------------------
...............................................................................................................................ACACTGAAATATTTTCCTCCAGA.................................................2311.001.00--------------------------------------------------------------1.00----
.......................................................................................................................TGGGACTCACACTGAAATATTTTCCTCCAG..................................................3011.001.00-1.00-----------------------------------------------------------------
............................................................................................................................CTCACACTGAAATATTTTCCTCCAGA.................................................261.000.00-------------1.00-----------------------------------------------------
........GTGACTGTAAAAATGGGTGGAAAGGAAA...................................................................................................................................................................2811.001.001.00------------------------------------------------------------------
...................................................................................................CTTCTGTGGGAGGGGGCC..................................................................................1811.001.00-1.00-----------------------------------------------------------------
.............................................................................................................................TCACACTGAAATATTTTCCTCCAGAA................................................2611.002.00--------1.00----------------------------------------------------------
...................................................................................................................................................AGGTGACAGTCAGTGTGAT.................................1911.001.00----------------------------------------------------1.00--------------
..................................................GTAAGTGGTAGTTGGCCTTGGATGCTATCTCTGGGACCCTTCCCTCTGTCTTCTGTGGGAGGGGGCCACTGGGACTCACACTGAAATATTTTCCTCTAGT.................................................1001.000.00------------------------------------------------------1.00------------
.......................................................................................................TGTGGGAGGGGGCCACTGGA............................................................................201.000.00-------------1.00-----------------------------------------------------
...CTACTGTGACTGTAAAAATGGGTGG...........................................................................................................................................................................2511.001.00-------------------------------------------------------1.00-----------
.....ACTGTGACTGTAAAAATG................................................................................................................................................................................1811.001.00------------------------------------1.00------------------------------
..................................................GTAAGTGGTAGTTGGCCTTGG................................................................................................................................2111.001.00------------------------------------------1.00------------------------
.......TGTGACTGTAAAAATGGGTGGAA.........................................................................................................................................................................2311.001.001.00------------------------------------------------------------------
...............................................................................................CTGTCTTCTGTGGGAGGG......................................................................................1820.500.50----------------------------------0.50--------------------------------
........GTGACTGTAAAAATGG...............................................................................................................................................................................1640.250.25-----------------------------------0.25-------------------------------
..................................................GTAAGTGGTAGTTGG......................................................................................................................................1540.250.25--------------0.25----------------------------------------------------

Antisense strand
CTTCTACTGTGACTGTAAAAATGGGTGGAAAGGAAAGACCTGCCACTCACGTAAGTGGTAGTTGGCCTTGGATGCTATCTCTGGGACCCTTCCCTCTGTCTTCTGTGGGAGGGGGCCACTGGGACTCACACTGAAATATTTTCCTCCAGGTGACAGTCAGTGTGATGAGGCCACGTGCAACAACGGTGGCACCTGCTAT
..................................................((.(((..(((.((((((..((.......))..)).((((((((............)))))))))))))))..))).))......................................................................
..................................................51................................................................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................................TCCAAGGCCAACTAC............................................................................................................................... 1540.250.25------------------------------------------------------------------0.25