| (1) AGO1.ip | (1) AGO1.ip OTHER.mut | (1) AGO2.ip | (1) BRAIN | (1) BREAST | (11) CELL-LINE | (1) HELA | (1) LIVER | (1) OTHER | (1) OVARY | (1) RRP40.ip | (1) XRN.ip |
| AAGAAGCTGGATAGGTTCCACTGGCATTCACATAGCGCATGAGGAAGCTGAGGCACATGTGCCCCTGGACCGCACGGATGCCTCTGTGGCCTCCCTGTGCCACCTCCTGGCCCGGCCAGGGGACATCTGGGGCCTGGGCAGCAGCATGGGGCTCTCAGAGGGTGGAGGGCTAGGGCCTGATGCTGCTGCTGTGGGCCCAGGTCTCTCAACTACGGGGGCATCGGCACCATCATTGGACATGAGCTGACCC .................................................................................................................................((((((((((((((((((.(((((((.....(((.....)))))))))).))))))))))).))))))).................................................... .................................................................................................................................130...................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | GSM379267(GSM379267) Small RNA from clear cell ovarian cancer tissue. (ovary) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR095854(SRX039177) "miRNA were isolated from FirstChoice Human B. (brain) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189786 | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGG........................................................ | 21 | 1 | 226.00 | 226.00 | 109.00 | 40.00 | 43.00 | 30.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................GGGCCTGATGCTGCTGCTGTGG........................................................ | 22 | 1 | 26.00 | 26.00 | 9.00 | 8.00 | 1.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGGA....................................................... | 22 | 1 | 21.00 | 226.00 | 13.00 | 1.00 | 2.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGGGG........................................................ | 21 | 9.00 | 0.00 | 5.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................GATGCTGCTGCTGTGGGCCCAGA................................................. | 23 | 8.00 | 0.00 | 7.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTC................................................................................................ | 20 | 1 | 7.00 | 7.00 | - | - | 1.00 | - | 4.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................TAGGGCCTGATGCTGCTGCTGTGG........................................................ | 24 | 1 | 6.00 | 6.00 | 3.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCT................................................................................................. | 19 | 1 | 5.00 | 5.00 | - | - | - | - | 4.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................AGGGCCTGATGCTGCTGCTGTGG........................................................ | 23 | 1 | 5.00 | 5.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTTG........................................................ | 21 | 4.00 | 0.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................GGGCCTGATGCTGCTGCTGTGGA....................................................... | 23 | 1 | 4.00 | 26.00 | - | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................GGGCCTGATGCTGCTGCTGGGG........................................................ | 22 | 4.00 | 0.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCTCA............................................................................................. | 23 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTT................................................................................................ | 20 | 1 | 3.00 | 5.00 | - | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCTCT............................................................................................. | 23 | 1 | 3.00 | 2.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCTC.............................................................................................. | 22 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCTCTT............................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGAGG........................................................ | 21 | 2.00 | 0.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGGGCCTGATGCTGCTGCTGGGG........................................................ | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................AGGGCTAGGGCCTGATGCTGCTGCTGTGG........................................................ | 29 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................CCCGGCCAGGGGACAGAGA......................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGGGCCTGATGCTGCTGCTGTGT........................................................ | 23 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................................TTGGACATGAGCTGACC. | 17 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................CCATCATTGGACATGAGCTGACC. | 23 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................CGGCACCATCATTGGACATGAG....... | 22 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGGAAG..................................................... | 24 | 1 | 1.00 | 226.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGGGGG....................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGGGCCTGATGCTGCTGCTGTGGTT...................................................... | 25 | 1 | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................AGGAAGCTGAGGCACAAG............................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................TCGGCACCATCATTGGACATGAGC...... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGGGA...................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCT............................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCCC.............................................................................................. | 22 | 1 | 1.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................................TGGGGCCTGGGCAGCAGCATGG..................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTAAC.............................................................................................. | 22 | 1 | 1.00 | 5.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TGGGGCTCTCAGAGGGTGG..................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................CGCATGAGGAAGCTGGAG..................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGGGGA....................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGGGCCTGATGCTGCTGCTGTGTT....................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGAGGA....................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................TCGGCACCATCATTGGACATGAGCTGACC. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGGC....................................................... | 22 | 1 | 1.00 | 226.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................GGCATCGGCACCATCATTGGACATGAGCT..... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................GACATCTGGGGCCTGGGGGG............................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................TGGGCAGCAGCATGGGGCTCTCTAT........................................................................................... | 25 | 1 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGGTG........................................................ | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTGTGGT....................................................... | 22 | 1 | 1.00 | 226.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................ACCATCATTGGACATGAG....... | 18 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................GTGCCCCTGGACCGC................................................................................................................................................................................. | 15 | 4 | 0.75 | 0.75 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.75 |
| ..................................................................................................................................................................................GATGCTGCTGCTGTGGGCCC.................................................... | 20 | 2 | 0.50 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTTTGG........................................................ | 21 | 3 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCTTGGG........................................................ | 21 | 3 | 0.33 | 0.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GGCCTGATGCTGCTGCT............................................................ | 17 | 3 | 0.33 | 0.33 | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAGAAGCTGGATAGGTTCCACTGGCATTCACATAGCGCATGAGGAAGCTGAGGCACATGTGCCCCTGGACCGCACGGATGCCTCTGTGGCCTCCCTGTGCCACCTCCTGGCCCGGCCAGGGGACATCTGGGGCCTGGGCAGCAGCATGGGGCTCTCAGAGGGTGGAGGGCTAGGGCCTGATGCTGCTGCTGTGGGCCCAGGTCTCTCAACTACGGGGGCATCGGCACCATCATTGGACATGAGCTGACCC .................................................................................................................................((((((((((((((((((.(((((((.....(((.....)))))))))).))))))))))).))))))).................................................... .................................................................................................................................130...................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | GSM379267(GSM379267) Small RNA from clear cell ovarian cancer tissue. (ovary) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | TAX577740(Rovira) total RNA. (breast) | SRR095854(SRX039177) "miRNA were isolated from FirstChoice Human B. (brain) | GSM956925Ago2D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR189786 | SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................TGTGCCCCTGGACCGCCACA............................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........................................................TGCCCCTGGACCGCACTCCG........................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .........................................................................................................................................................................................CTGCTGTGGGCCCAGTACC.............................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .......................................................................................GGCCTCCCTGTGCCAG................................................................................................................................................... | 16 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ............................................................................................CAGGAGGTGGCACAGGG............................................................................................................................................. | 17 | 6 | 0.17 | 0.17 | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |