ID: uc010fwk.2_intron_13_0_chr2_220427397_r.3p
GENE: (7)
chr2:220427347-220427596-


(1)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(2)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES

Sense strand
AGAAAGTCTGCTGTGCTTTTGTGACAGCTGTATTCGTGTGTCTCTAGCTGTGAGTAACTGTCAGCTGCTGTGAGATTTGGTCTCAGGAAGGTCCCTCTTCAACACATGGCCTACTTTCCAGGGGTAGGGAACACAACGGGGTCAGGGAGGACGGCAGGGCACACCCCTCATGCCCGGCAGTGGCTGTCCCTGTCCTCCAGACGTCTCCTCGTGGATCGTGTATCCCAGCGGCAAGGTGTATGTGGCAGCC
.................................................................................................................................................(((((((((..(((((.........)))))(((((...))))).)))))))))....................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGT.................................................21119.008.003.00---1.00--2.00-1.001.00--1.001.00----1.00-1.00----1.00---1.001.00---------1.00----1.00---1.00-----1.00-----
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGA.................................................21117.0017.00--1.001.001.003.00---1.00---1.00-1.00-1.00--1.00------1.00--------------1.00--1.00---1.00---1.00---1.00----
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAG..................................................2018.008.005.00--1.00---------------------------------------1.00-----------1.00------
...............................................................................................................................................................................................................................CCCAGCGGCAAGGTGTATGTGGC....2312.002.00------2.00-------------------------------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGTT................................................2212.008.00--------1.00---------1.00-------------------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGATAT..............................................2412.0017.00----------------2.00---------------------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGAAGA..............................................2412.0017.00---1.00---------------------------------1.00------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGTTT...............................................2312.008.00------------2.00-------------------------------------------------
...................................................................................................................................................AGGACGGCAGGGCACACCCCTAT................................................................................2312.001.00--------------------------------------1.00------------1.00----------
.......................................................................................................................................................................................................GACGTCTCCTCGTGGG...................................161.000.00------------------------------------------------1.00-------------
..........................................................................................................................................................................................TCCCTGTCCTCCAGAGCAG.............................................191.000.00--------------1.00-----------------------------------------------
..........................................................................................................................................................................................TCCCTGTCCTCCAGACGCTCA...........................................211.000.00--------------------------------------------1.00-----------------
.....................................................................................................................................................................................GGCTGTCCCTGTCCTCCAGA.................................................2011.001.00-----------------------------------------------1.00--------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGAAGT..............................................2411.0017.00-----------1.00--------------------------------------------------
...................................................................................................................................................AGGACGGCAGGGCACACCCCTTA................................................................................2311.001.00----------------------------------------------------------1.00---
...................................................................................................................................................................................................................TGGATCGTGTATCCCAGCGGCAA................2311.001.00---------------1.00----------------------------------------------
.....................................................................................................................................................................................GGCTGTCCCTGTCCTCCAGT.................................................201.000.00-----------1.00--------------------------------------------------
..........................................................................................................................................................................................TCCCTGTCCTCCAGATAAA.............................................191.000.001.00-------------------------------------------------------------
...................................................................................................................................................AGGACGGCAGGGCACACCCCT..................................................................................2111.001.00----------1.00---------------------------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGCAA...............................................2311.008.00----1.00---------------------------------------------------------
..........................................................................................................................................................................................TCCCTGTCCTCCAGAGAC..............................................181.000.00------------------------------------1.00-------------------------
...............................................................................................................................................................................................................................CCCAGCGGCAAGGTGTATGTGGTC...241.000.00------------------------1.00-------------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCCGT.................................................211.000.00-----------------------1.00--------------------------------------
..............................................................................................................................................CAGGGAGGACGGCAGGGCACAC......................................................................................2211.001.00---------------------------------1.00----------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGAT................................................2211.0017.001.00-------------------------------------------------------------
.............................................................................................................................................................................................................................ATCCCAGCGGCAAGGTGA...........181.000.00------------------------------------------------------1.00-------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGAA................................................2211.0017.00-----------------------------------1.00--------------------------
......................................................................................................................................AACGGGGTCAGGGAGGACGGCAGGGC..........................................................................................2611.001.00--1.00-----------------------------------------------------------
.........................................................................GATTTGGTCTCAGGAAGG...............................................................................................................................................................1811.001.00--1.00-----------------------------------------------------------
...............................ATTCGTGTGTCTCTAGCTG........................................................................................................................................................................................................1911.001.00-----------------------------1.00--------------------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCATA.................................................211.000.00--------1.00-----------------------------------------------------
..............................................................AGCTGCTGTGAGATTTGTAG........................................................................................................................................................................201.000.00--------------------------------1.00-----------------------------
...................................................................................................................................................AGGACGGCAGGGCACACCCCTT.................................................................................2211.001.00----------------------------------------------------1.00---------
...................................................................................................................................................AGGACGGCAGGGCACACCCCTAAT...............................................................................2411.001.00----------------------------------------1.00---------------------
....................................................................................................................................................................................TGGCTGTCCCTGTCCTCCAGGAA...............................................2311.008.00----------------------1.00---------------------------------------
.........................................................CTGTCAGCTGCTGTGAGATT.............................................................................................................................................................................2020.500.50-----------------0.50--------------------------------------------
.............................................................................................CCTCTTCAACACATG..............................................................................................................................................1540.250.25------------------------------------------------------------0.25-
....................................................................................................................................................................................TGGCTGTCCCTGTCCTC.....................................................1740.250.25-----------------------------------------------------------0.25--
.....................................................GTAACTGTCAGCTGC......................................................................................................................................................................................1550.200.20-------------------------------------------------------------0.20

Antisense strand
AGAAAGTCTGCTGTGCTTTTGTGACAGCTGTATTCGTGTGTCTCTAGCTGTGAGTAACTGTCAGCTGCTGTGAGATTTGGTCTCAGGAAGGTCCCTCTTCAACACATGGCCTACTTTCCAGGGGTAGGGAACACAACGGGGTCAGGGAGGACGGCAGGGCACACCCCTCATGCCCGGCAGTGGCTGTCCCTGTCCTCCAGACGTCTCCTCGTGGATCGTGTATCCCAGCGGCAAGGTGTATGTGGCAGCC
.................................................................................................................................................(((((((((..(((((.........)))))(((((...))))).)))))))))....................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................TCCCTGTCCTCCAGACAGC............................................. 191.000.00-------------------------1.00------------------------------------
................................................................................................................................................................................GCAGTGGCTGTCCCTAGGG....................................................... 191.000.00----------------------------------1.00---------------------------
..................................................................................................................................................................................................CTCCAGACGTCTCCTCTT...................................... 181.000.00----------------------------1.00---------------------------------
...................................................................................................................................................................................................TCCAGACGTCTCCTCTCT..................................... 181.000.00-1.00------------------------------------------------------------
..................................................................................................................................................................................................CTCCAGACGTCTCCTTTTA..................................... 191.000.00-1.00------------------------------------------------------------
..................................................................................................................................................................................................CTCCAGACGTCTCCTATT...................................... 181.000.00-1.00------------------------------------------------------------
..........................................................................................................................................................CAGGGCACACCCCTCATG.............................................................................. 181.000.00---------------------------------------1.00----------------------