ID: uc010fur.2_intron_24_0_chr2_211504784_f.3p
GENE: (25)
chr2:211507008-211507257+


(6)
B-CELL 		(1)
BREAST 		(7)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HELA 		(14)
LIVER 		(7)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TGTTTAATTAGTACCCATTTTTCCTACTACTAATACAGTATGCATCATGGGTTTGAAATTTATATCTTGGAGTTTAAAAAATTGAATTGAAAATCATTAGCTTCCTTAGCCTGGACTGACTGGTGATACATTTCTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAGGCAGCAGTGTGGAATTTGATTGGTGTGCTGTCTCTAGTATCCGCACACTG
............................................................................................................((..((((.((.((((((((((..............))))))(((......)))................)))).)).....))))..))....................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343334SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR189782
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGTC..................25132.0032.003.009.008.002.004.00--4.00--1.00---1.00------------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCT.....................19128.0028.0017.005.001.004.00------1.00----------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGTC..................24124.0024.006.002.0011.001.002.00-----1.00---1.00------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGTCTC................26121.0021.007.005.002.003.00------2.00-1.00---1.00----------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCTGTC..................26121.0021.006.004.006.00-1.00--3.00-1.00-----------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGTGCT.....................24121.0021.006.006.001.002.00---3.00-----2.00-----------1.00-------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGC......................18119.0019.0014.003.00----------2.00--------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGT........................21118.0018.005.004.00-5.00--1.00---1.00-2.00--------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCT.....................18117.0017.0010.007.00-------------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCT.....................23115.0015.0010.002.00-2.00--------1.00--------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGT...................24115.0015.003.001.009.001.00--1.00--------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTG....................23114.0014.00-3.005.005.00---------1.00-------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGT...................23113.0013.003.001.005.001.00---2.00----1.00--------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGC......................22113.0013.003.003.003.00---2.00-------1.001.00-----------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCTGT...................25112.0012.003.00-2.001.006.00----------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGTG.......................24112.0012.002.002.003.003.001.00----------1.00-----------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGTCTC................27112.0012.003.003.00-2.002.00--------1.00--1.00----------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCT.....................21112.0012.005.002.003.00----------2.00-------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGTG.......................22112.0012.004.001.00-2.00---3.00-----2.00-------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGT........................20112.0012.005.003.002.002.00-----------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGT..........................18112.0012.001.001.00-1.00----9.00------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGT........................23111.0011.002.001.005.00------3.00-----------------------------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCT...............18111.0011.003.001.002.00---5.00--------------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGTCTCT...............27111.0011.002.003.00-4.00------------2.00----------------------------
..............................................................................................................CTGGACTGACTGGTGATACATTTCTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAG..................................................90111.0011.00-----11.00---------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCTG....................24111.0011.003.002.002.003.00---1.00-------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCT.....................20111.0011.001.005.00-1.001.00-1.00-----2.00--------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTGTCTC................25110.0010.001.001.006.00-2.00----------------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGTCT.................25110.0010.003.001.004.00----2.00-------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTG.........................1919.009.007.001.00-1.00-----------------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTG....................2219.009.005.003.00-1.00-----------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTG.........................2019.009.001.001.00-3.003.00---------1.00------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTG.......................2119.009.005.001.00-3.00-----------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGC......................1918.008.004.002.00-1.00--------1.00--------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTG.........................2218.008.001.002.002.003.00-----------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGT..........................1918.008.003.002.00-3.00-----------------------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTGTC..................2218.008.002.00---2.00----1.00-3.00---------------------------------
.....................................................................................................................................................................................AATCTCATTGTCTCTGCAG..................................................1918.008.00--------8.00------------------------------------
.......................................................................................................................................................................................................................TTGATTGGTGTGCTGTCTC................1918.008.002.00--2.001.00-1.00---2.00----------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATTGGTGTGCT.....................2717.007.007.00--------------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGT..........................2117.007.00---------7.00-----------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGT........................1917.007.00-1.001.002.00--1.00--------2.00-----------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCT.....................2217.007.00-3.002.002.00-----------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTGATTGGTGTG.......................2716.006.002.002.00-2.00-----------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGTCT.................2616.006.00--5.00-------1.00----------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTG.......................2015.005.002.00-1.002.00-----------------------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTGT........................2215.005.003.001.00-1.00-----------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGTGC......................2515.005.001.002.00-1.00-------1.00---------------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTGTCTC................2415.005.003.00-----1.00---1.00----------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTG.......................1815.005.004.00--1.00-----------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGTGC......................2315.005.004.00------1.00-------------------------------------
.........................................................................................................................................TTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAG..................................................6315.005.00-----------------5.00---------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTGTG.......................2315.005.00-1.003.001.00-----------------------------------------
.....................................................................................................................................CTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAG..................................................6715.005.00-----5.00---------------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGT........................1815.005.002.001.00---------2.00---------------------------------
..........................................................................................................................GTGATACATTTCTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAG..................................................7815.005.00-----5.00---------------------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTGTGCT.....................2515.005.003.002.00-------------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATTGGTG.........................2314.004.003.00-1.00------------------------------------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCTA..............1914.004.003.00--1.00-----------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTG................................1914.004.004.00--------------------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATTTTG...............................214.000.00---------------------2.00-2.00---------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGTGCTG....................2714.004.002.002.00-------------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATTGGTGTG.......................2514.004.002.002.00-------------------------------------------
......................................................................................................................................................................................................................TTTGATTGGTGTGCTGTCT.................1914.004.002.00-1.001.00-----------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGTGCTG....................2514.004.002.001.00-------------1.00-----------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTG.........................2114.004.001.00--2.00-----------------------------------1.00-----
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTGTCTCT...............2614.004.00---1.00-------3.00---------------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTGTGC......................2414.004.001.003.00-------------------------------------------
................................................................................................................GGACTGACTGGTGATACATTTCT...................................................................................................................2314.004.002.002.00-------------------------------------------
..........................................................................................................................................................................................................................ATTGGTGTGCTGTCTCTA..............1814.004.001.00---3.00----------------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCTGT...................2013.003.00-2.00-----------------------------1.00-------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTGATTGGTGT........................2613.003.00-2.00--------------1.00----------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTGTCT.................2313.003.00-1.00---------1.00---1.00-----------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTGTCTT................2413.003.00---------3.00-----------------------------------
........................................................................................................................................................................................................................TGATTGGTGTGCTGTCTCT...............1913.003.001.00------------2.00-------------------------------
......................................................................................................................................................................................................................TTTGATTGGTGTGCTGTCTC................2013.003.00-1.00-1.00------1.00----------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATTTT................................203.000.00------------------3.00--------------------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCTAG.............2013.003.001.00--2.00-----------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTTGG..............................203.000.00-------------------3.00-------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGC......................2013.003.001.00--2.00-----------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTGATTGGTG.........................2513.003.001.001.001.00------------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATTGGTGT........................2413.003.00---2.00------1.00----------------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTG....................2012.002.002.00--------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTT.................................1812.002.001.00----------1.00---------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTT.......................2112.0012.00--2.00------------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTGATTGGTGTGC......................2812.002.00------------------------2.00--------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATTGGTGTGC......................2612.002.001.001.00-------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTGATTGGTG.........................2612.002.002.00--------------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGC......................2112.002.00---1.00----------1.00------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATT..................................1812.002.00----------------------2.00----------------------
.........................................................................................................TTAGCCTGGACTGACTGGTGATACA........................................................................................................................2512.002.001.001.00-------------------------------------------
...................................................................................................................................................................................................TGCAGGCAGCAGTGTGGAATTT.................................2212.002.002.00--------------------------------------------
..................................................................................................................................................................................GCCAATCTCATTGTCTCTGC....................................................2012.002.00--------------------2.00------------------------
..................................................................................................................................................................................................................GGAATTTGATTGGTGTGCTGT...................2112.002.00--2.00------------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTG....................2112.002.001.001.00-------------------------------------------
.......................................................................................................................................................................................................................TTGATTGGTGTGCTGTCT.................1812.002.001.001.00-------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTGAT..............................2112.002.00--2.00------------------------------------------
........................................................................................................................................................................................................................TGATTGGTGTGCTGTCTC................1812.002.002.00--------------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGTGTGCTGTC..................2712.002.00------1.00-------1.00------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGCTG......................2121.500.50--1.50------------------------------------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCTT..............1911.0011.00--------------1.00------------------------------
.......................................................................................................................................................................................................................TTGATTGGTGTGCTGTCTCT...............2011.001.00-1.00-------------------------------------------
............ACCCATTTTTCCTACTAAT...........................................................................................................................................................................................................................191.000.00----------------------------------------1.00----
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGTCTT................2611.0010.001.00--------------------------------------------
.....................................................................................................................................................................................................................ATTTGATTGGTGTGCTGTCTT................211.000.00----1.00----------------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCTG....................1911.001.001.00--------------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTGT...................2211.001.00------1.00--------------------------------------
.........................................................................................................................................................................................................CAGCAGTGTGGAATTTGATTGGTGT........................2511.001.001.00--------------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGTG..................2511.0015.001.00--------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTGATTGGTGT........................2711.001.001.00--------------------------------------------
..........................................................................................................................................................................................................................ATTGGTGTGCTGTCTCTAGTA...........2111.001.001.00--------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTGA...............................2011.001.00-1.00-------------------------------------------
...............................................................................................................TGGACTGACTGGTGATACATTT.....................................................................................................................2211.001.00-1.00-------------------------------------------
....................................................................................................................................................................................................................AATTTGATTGGTGTGCTGATA.................2111.001.001.00--------------------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCTGTCTCCAG.............261.000.00---------1.00-----------------------------------
................................................................................................................................................................................................................GTGGAATTTGATTGGTGTGCTGCTT.................2511.009.001.00--------------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGG........................2311.008.00-1.00-------------------------------------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGT..........................2011.001.00-------------------------1.00-------------------
..................................................................................................................................TTTCTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAG..................................................7011.001.00------------------------------------1.00--------
......................................................................................................................................................................................................................TTTGATTGGTGTGCTGTGTC................2011.001.001.00--------------------------------------------
..........................................................................................................................................................................................................................ATTGGTGTGCTGTCTCTAG.............1911.001.00---1.00-----------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGATT.............................1911.001.00--1.00------------------------------------------
.........................................................................................................................................................................................................CAGCAGTGTGGAATTTGATTGGTG.........................2411.001.00-1.00-------------------------------------------
.................................................................................................................GACTGACTGGTGATACATTTCT...................................................................................................................2211.001.00-1.00-------------------------------------------
..................................................................................................................................................................................GCCAATCTCATTGTCTCTGCAG..................................................2211.001.00-----------1.00---------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCTGTCT.................2211.001.00---1.00-----------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTGAT..............................1811.001.00---1.00-----------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTATC..................2511.007.001.00--------------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCTGTA..................2611.0012.00----1.00----------------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATTTG................................2011.001.00---------------------------------1.00-----------
.........................................................................................................................................................................................................CAGCAGTGTGGAATTTTGG..............................191.000.00-----------------------------1.00---------------
............................................................................................................................................................................................................CAGTGTGGAATTTGATTGGTGTGCTGT...................2711.001.00--1.00------------------------------------------
................................................................................................................GGACTGACTGGTGATACATTTC....................................................................................................................2211.001.001.00--------------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTGTCAA................2511.001.00--1.00------------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGTGCT.....................2611.001.001.00--------------------------------------------
....................................................................................................................................................................................................................AATTTGATTGGTGTGCTGTCTCT...............2311.001.00-1.00-------------------------------------------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTGTGCTGTGTC................2711.0015.00---1.00-----------------------------------------
...........................................................................................................................................................................................................GCAGTGTGGAATTTGATTGGTGTGCTGT...................2811.001.001.00--------------------------------------------
...................................................................................................................................................................................................................GAATTTGATTGGTGTGCTGTCTCTAG.............2611.001.00---------1.00-----------------------------------
......................................................................................................TCCTTAGCCTGGACTGACTGGTGATAC.........................................................................................................................2711.001.00---------------1.00-----------------------------
......................................................................................................................................................................................................................TTTGATTGGTGTGCTGT...................1711.001.00--------------------------------1.00------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCTAGT............2111.001.001.00--------------------------------------------
...............................................................................................................TGGACTGACTGGTGATACATTTAT...................................................................................................................2411.001.001.00--------------------------------------------
......................................................................................................................................................................................................................TTTGATTGGTGTGCTGTCA.................191.000.00---1.00-----------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTGCTGTC..................2311.001.00------1.00--------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTTCG..............................201.000.00-----------------------------------------1.00---
...............................................................................................................TGGACTGACTGGTGATACA........................................................................................................................1911.001.00-1.00-------------------------------------------
.......................................................................................................................................................................................................GGCAGCAGTGTGGAATTTTGG..............................2111.002.00------------------------------1.00--------------
....................................................................................................................................................................................................................AATTTGATTGGTGTGCTG....................1811.001.001.00--------------------------------------------
.........................................................................................................TTAGCCTGGACTGACTGGTGATACATTTCT...................................................................................................................3011.001.00-1.00-------------------------------------------
.........................................................................................................................................................................................................................GATTGGTGTGCTGTCTCTAGTA...........2211.001.001.00--------------------------------------------
.................................................................................................................................................................................................................TGGAATTTGATTGGTGTTTA.....................201.000.00---1.00-----------------------------------------
..........................................................................................................................................................................................................................ATTGGTGTGCTGTCTCTAGTATCCGCA.....2711.001.001.00--------------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGGGT........................201.000.00--1.00------------------------------------------
...............................................................................................................TGGACTGACTGGTGATACATTTTT...................................................................................................................2411.001.001.00--------------------------------------------
............................................................................................................GCCTGGACTGACTGGGTGC...........................................................................................................................191.000.00----------------------------------1.00----------
.........................................................................................................................................................................................................CAGCAGTGTGGAATTTGATTGGTGTG.......................2611.001.00-1.00-------------------------------------------
...........................................................................................................AGCCTGGACTGACTGGTGA............................................................................................................................1911.001.00------1.00--------------------------------------
.....................................................................................................................................................................................AATCTCATTGTCTCTGCAA..................................................191.000.00--------1.00------------------------------------
.............................................................................................................................................................................................................................GGTGTGCTGTCTCTAGTATC.........2011.001.00------1.00--------------------------------------
........................................................................................................................................................................................................GCAGCAGTGTGGAATTTGATTGGT..........................2411.001.001.00--------------------------------------------
..............................................................................................................................................................................................................GTGTGGAATTTGATTGGTGTGCTATT..................2611.0015.001.00--------------------------------------------
.............................................................................................................................................................................................................AGTGTGGAATTTGATTGGGGT........................211.000.00---1.00-----------------------------------------
..........................................................................................................................................................................................................AGCAGTGTGGAATTTTG...............................171.000.00----------------------------1.00----------------
...........................................................................................................AGCCTGGACTGACTGGTGAT...........................................................................................................................2011.001.00------1.00--------------------------------------
.......................................................................................................................................................................TTATCCCTTTTGCCAATCTCATTGTCT........................................................2711.001.00-----------------------------------1.00---------
...............................................................................................................................................................................................................TGTGGAATTTGATTGGTG.........................1820.500.50-0.50-------------------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAAT...................................1730.330.33-------------------------------------------0.33-
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATA..................................1830.330.33--------------0.33------------------------------
......................................................................................................................................................................................................AGGCAGCAGTGTGGAATATT................................2030.330.33--------------------------------------------0.33

Antisense strand
TGTTTAATTAGTACCCATTTTTCCTACTACTAATACAGTATGCATCATGGGTTTGAAATTTATATCTTGGAGTTTAAAAAATTGAATTGAAAATCATTAGCTTCCTTAGCCTGGACTGACTGGTGATACATTTCTGCTTCTCTTTGTATTGTAACTTCGTGCTTCTCTTATCCCTTTTGCCAATCTCATTGTCTCTGCAGGCAGCAGTGTGGAATTTGATTGGTGTGCTGTCTCTAGTATCCGCACACTG
............................................................................................................((..((((.((.((((((((((..............))))))(((......)))................)))).)).....))))..))....................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343334SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR189782
......................................................................................................................................TGCTTCTCTTTGTATTAAA................................................................................................. 192.000.00--------------------------1.00----------1.00-------
.............................................................TTTTTTAAACTCCAAGATAT......................................................................................................................................................................... 2011.001.00------------------------------------------1.00--
........................................................................................................................................................................................................GCAGCAGTGTGGAATTAA................................ 181.000.00--------------------------------------1.00------
...............................................................................................................TGGACTGACTGGTGATATG........................................................................................................................ 191.000.00---------------------------1.00-----------------