ID: uc010fqk.1_intron_1_0_chr2_173330392_f.5p
GENE: ITGA6(2)
chr2:173330342-173330591+


(1)
B-CELL 		(7)
BRAIN 		(10)
BREAST 		(10)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(5)
SKIN

Sense strand
CGACATCACCGCCCGGGGGCCATGCACGCGGATCGAGTTTGATAACGATGGTGCGTTCCTTTCCCTCACTCAGCGTTCACTCCGGCAGCTTGCCTGTACTGTTTCCATGAGGGAGGAGAGTGGGGACAAACATTTATTCTTGTAGAGAGGACTTCTTTTAATTGCATCAGACTTGACTGTTTTTTATTTGCCCTGAAAATATTTACTTACTTTACTTCTGAATCATACTGGGATGCCGCGTGTTTTGCTG
.................................................................((((((............(((.....))).......(((((....)))))..))))))...............................................................................................................................
.................................................................66...............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................TGAGGGAGGAGAGTGGATAG...........................................................................................................................2023.000.0011.002.004.001.00-1.001.00----1.00-----------------1.00---------1.00--
...........................................................................................................TGAGGGAGGAGAGTGTAT.............................................................................................................................189.000.001.001.00-1.001.001.00----1.00-1.00-------------------1.00-1.00-------
...........................................................................................................TGAGGGAGGAGAGTGTATA............................................................................................................................199.000.002.00-1.002.00-1.00-----------1.00---1.00------1.00-------------
...........................................................................................................TGAGGGAGGAGAGTGTA..............................................................................................................................175.000.00----1.00----1.001.001.00-------------1.00----------------
...............................................................................................................................................................................................................TACTTTACTTCTGAATCA.........................1813.003.00-------2.001.00---------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGATAA...........................................................................................................................202.000.00-1.00----------------------------------1.00-----
........................................................................................................................................................................................................ATTTACTTACTTTACTTCTGAATCA.........................2512.002.00--------1.00--------------1.00------------------
...........................................................................................................TGAGGGAGGAGAGTGGAGAG...........................................................................................................................202.000.002.00-----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGATAT...........................................................................................................................202.000.001.001.00----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGATGG...........................................................................................................................202.000.002.00-----------------------------------------
......................................................................................................................................................................................................ATATTTACTTACTTTACAG.................................191.000.00------1.00-----------------------------------
.................................................................................................................................................................................................................CTTTACTTCTGAATCATACTGGGA.................2411.001.00------------------------------1.00-----------
......................................................................CAGCGTTCACTCCGGCGATC................................................................................................................................................................201.000.00---------------1.00--------------------------
...........................................................................................................TGAGGGAGGAGAGTGGTTAA...........................................................................................................................201.000.001.00-----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGTAA.............................................................................................................................181.000.00------------1.00-----------------------------
.......................GCACGCGGATCGAGTTTGATAACG...........................................................................................................................................................................................................2411.001.00-------------------1.00----------------------
...........................................................................................................TGAGGGAGGAGAGTGCATC............................................................................................................................191.000.00------------------------1.00-----------------
...........................................................................................................TGAGGGAGGAGAGTGGGTAG...........................................................................................................................201.000.001.00-----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGGCAG...........................................................................................................................201.000.001.00-----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGTGTA............................................................................................................................191.000.00----1.00-------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGCTAG...........................................................................................................................201.000.00-1.00----------------------------------------
......................................................................................................................................................ACTTCTTTTAATTGCAACTG................................................................................201.000.00------1.00-----------------------------------
....................................................................................................................................TTTATTCTTGTAGAGAGTGGG.................................................................................................211.000.00---------------------------------1.00--------
...........................................................................................................TGAGGGAGGAGAGTGTATT............................................................................................................................191.000.00---------------------------1.00--------------
.................................................................................................................AGGAGAGTGGGGACACG........................................................................................................................171.000.00-----1.00------------------------------------
...................................................................................................................................ATTTATTCTTGTAGAGAGGCCG.................................................................................................221.000.00--------------1.00---------------------------
...........................................................................................................TGAGGGAGGAGAGTGGGTAGT..........................................................................................................................211.000.00---------1.00--------------------------------
......CACCGCCCGGGGGCCATGCACGC.............................................................................................................................................................................................................................2311.001.00----------------1.00-------------------------
...........................................................................................................TGAGGGAGGAGAGTGTAG.............................................................................................................................181.000.001.00-----------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGCTGG...........................................................................................................................201.000.00----1.00-------------------------------------
...........................................................................................................TGAGGGAGGAGAGTGGGTGG...........................................................................................................................201.000.00--------------------1.00---------------------
...........................................................................................................TGAGGGAGGAGAGTGGAA.............................................................................................................................181.000.00-------------------------------------1.00----
.........................................................................................................CATGAGGGAGGAGAGTGGGGA............................................................................................................................2120.500.50----------------------------------------0.50-
.................................................................................................................................................................................................................CTTTACTTCTGAATCA.........................1650.200.20-------0.20----------------------------------
.................................................................................................................................................................................TGTTTTTTATTTGCCCT........................................................1760.170.17-----------------------------------------0.17

Antisense strand
CGACATCACCGCCCGGGGGCCATGCACGCGGATCGAGTTTGATAACGATGGTGCGTTCCTTTCCCTCACTCAGCGTTCACTCCGGCAGCTTGCCTGTACTGTTTCCATGAGGGAGGAGAGTGGGGACAAACATTTATTCTTGTAGAGAGGACTTCTTTTAATTGCATCAGACTTGACTGTTTTTTATTTGCCCTGAAAATATTTACTTACTTTACTTCTGAATCATACTGGGATGCCGCGTGTTTTGCTG
.................................................................((((((............(((.....))).......(((((....)))))..))))))...............................................................................................................................
.................................................................66...............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................CTCCCTCATGGAAACAGTACAGG....................................................................................................................................... 2311.001.00-------------1.00----------------------------
................................................................................AACAGTACAGGCAAGCTGCCGGA................................................................................................................................................... 2311.001.00-----------------------------------1.00------
...................................................................AAGCTGCCGGAGTGAACGCTGAGT............................................................................................................................................................... 2411.001.00------------------1.00-----------------------
...........................................................................AGGCAAGCTGCCGGAGTGAA........................................................................................................................................................... 2011.001.00----------------------1.00-------------------
...............GGGGCCATGCACGCGAAA......................................................................................................................................................................................................................... 181.000.00--------------------------1.00---------------
.............................................................................AGGCAAGCTGCCGGAGTG........................................................................................................................................................... 1811.001.00--------------------------------------1.00---