ID: uc010fpl.2_intron_10_0_chr2_167129386_r.3p
GENE: (16)
chr2:167129336-167129585-


(2)
B-CELL
(12)
CELL-LINE
(1)
HEART
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(1)
SKIN
(1)
UTERUS

Sense strand
TAGTCTAGGGATACAGTGATGAGGAGTCTACCCTCGCCTCTGTCTCTCTCATGTGGTCTTATCCGTGTGTGAAAAGGTGCAGAAATCTTCGTTGCTGGTTTGTATTGTGGCCTATATTCGGAAAAGTGTACTTATTTTATTTTATTTTTTATATTTCCTGTCTCCCTATTTCTCTACCCCCTCTCCCCACCCTGATATAGGTCCTAAACCTATTTCTGGCCTTATTATTGAGCTCATTTAGTTCAGACAA

.............................................................................................................................126...........................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................CTTATTTTATTTTATTTTTCCAG.................................................................................................239.000.004.001.004.00----------------
.................................................................................................................................ACTTATTTTATTTTATTTTAG....................................................................................................217.000.004.002.001.00----------------
................................................................................................................................TACTTATTTTATTTTATTTTTTATATTTCCTG..........................................................................................3216.006.002.001.001.002.00---------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTATATTTCCTG..........................................................................................3115.005.001.001.003.00----------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTAAAG................................................................................................254.000.001.001.00-2.00---------------
..................................................................................................................................CTTATTTTATTTTATTTCAG....................................................................................................203.000.00-3.00-----------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTATCTTG..............................................................................................273.000.00-1.00-2.00---------------
................................................................................................................................TACTTATTTTATTTTATTTTAG....................................................................................................222.000.002.00------------------
..................................................................................................................................CTTATTTTATTTTATTTCTTG...................................................................................................212.000.00-1.001.00----------------
................................................................................................................................TACTTATTTTATTTTATTG.......................................................................................................192.000.00---2.00---------------
..................................................................................................................................CTTATTTTATTTTATTTCTAG...................................................................................................212.000.00--2.00----------------
........................................................................................................................................TTATTTTATTTTTTATATTGA.............................................................................................211.000.00------1.00------------
.................................................................................................................................ACTTATTTTATTTTATTTCACC...................................................................................................221.000.00----1.00--------------
....................................................................................................................................TATTTTATTTTATTTTTTATATGTCG............................................................................................261.000.00-1.00-----------------
.................................................................................................................................ACTTATTTTATTTTATTTCG.....................................................................................................201.000.00--1.00----------------
............................................................................................................................AGTGTACTTATTTTATTTTATTTTTTATATC...............................................................................................311.000.00----1.00--------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTATTAT...............................................................................................261.000.00---1.00---------------
................................................................................................................................TACTTATTTTATTTTATTTTTTATATTTCCCG..........................................................................................321.000.00--1.00----------------
.................................................................................................................................ACTTATTTTATTTTATTTCATC...................................................................................................221.000.00----1.00--------------
..................................................................................................................................CTTATTTTATTTTATTTTTTCAGT................................................................................................241.000.001.00------------------
..................................................................................................................................CTTATTTTATTTTATTTTTTCGG.................................................................................................231.000.001.00------------------
.................................................................................................................................ACTTATTTTATTTTATTTTATG...................................................................................................221.000.001.00------------------
..................................................................................................................................CTTATTTTATTTTATTTTTCCAA.................................................................................................231.000.00--1.00----------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTCG..................................................................................................231.000.001.00------------------
.......................................................................................................................................TTTATTTTATTTTTTATATTTTAAA..........................................................................................251.000.00-1.00-----------------
..................................................................................................................................CTTATTTTATTTTATTTTTTCTT.................................................................................................231.000.00-1.00-----------------
..............................................................................................................................TGTACTTATTTTATTTTATTGTCC....................................................................................................241.000.00------------------1.00
.................................................................................................................................ACTTATTTTATTTTATTTTTATG..................................................................................................231.000.00-1.00-----------------
......AGGGATACAGTGATGAGGAGT...............................................................................................................................................................................................................................2111.001.00---------------1.00---
..................................................................................................................................CTTATTTTATTTTATTTCACG...................................................................................................211.000.00--1.00----------------
.................................................................................................................................ACTTATTTTATTTTATTTTTTCAG.................................................................................................241.000.001.00------------------
................................................................................................................................TACTTATTTTATTTTATTTTTAAG..................................................................................................241.000.00-1.00-----------------
..................................................................................................................................................TTTTATATTTCCTGTCGCGT....................................................................................201.000.00----------1.00--------
.....................................................................................................................................ATTTTATTTTATTTTTTATCG................................................................................................211.000.00-1.00-----------------
..................................................................................................................................CTTATTTTATTTTATTTTTCCG..................................................................................................221.000.00---1.00---------------
......................................................................................................................................................................TATTTCTCTACCCCCCCG..................................................................181.000.00---------1.00---------
..................................................................................................................................CTTATTTTATTTTATTTTTTATAG................................................................................................241.000.00---1.00---------------
..................................................................................................................................CTTATTTTATTTTATTTTTACAG.................................................................................................231.000.00-1.00-----------------

Antisense strand
TAGTCTAGGGATACAGTGATGAGGAGTCTACCCTCGCCTCTGTCTCTCTCATGTGGTCTTATCCGTGTGTGAAAAGGTGCAGAAATCTTCGTTGCTGGTTTGTATTGTGGCCTATATTCGGAAAAGTGTACTTATTTTATTTTATTTTTTATATTTCCTGTCTCCCTATTTCTCTACCCCCTCTCCCCACCCTGATATAGGTCCTAAACCTATTTCTGGCCTTATTATTGAGCTCATTTAGTTCAGACAA

.............................................................................................................................126...........................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................................TTTCTCTACCCCCTCTAAA............................................................... 195.000.00-----2.00-----1.00----1.001.00-
.........................................................................................................................................................................TTCTCTACCCCCTCTCAA............................................................... 181.000.00--------1.00----------
................................................................................................................................................................................CCCCCTCTCCCCACCCTGGTAA.................................................... 221.000.00--------------1.00----
.........................................................................................................................................................................TTCTCTACCCCCTCTCAAA.............................................................. 191.000.00------------1.00------
........................................................................................................................................................................TTTCTCTACCCCCTCTACA............................................................... 191.000.00-------------1.00-----
......................................................................................................................................................................TATTTCTCTACCCCCTCTC................................................................. 191.000.00-------1.00-----------