ID: uc010fog.2_intron_9_0_chr2_158675072_r.5p
GENE: ACVR1(1)
chr2:158732108-158732357-


(1)
AGO2.ip 		(2)
B-CELL 		(4)
BRAIN 		(10)
BREAST 		(17)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTCGCACTCCGCCTCCCCCGGCTCAGCCCCCGGCCGCGGCGGGACCCGAGGTGAGCGCAGGTCGCCGGCCGCGCCTGCTGGAGCCGGGAGGACTGAGGGAGGAGGTAGCCTAGCGGGAGAAGAGGCAGGGATCGGGGGTGGCAGGGTGGGCGTCTGCGGTGCCTCCCCCTCGCTTTCATTCCTTTCTCCCCCAAGCTTGATCCCCTCTCCGTGGGGGAAGCAGCCGCGGAACAAAACTGTCTTGCTTTGG
..............................................................................................(((((.(((((((.(((.((..........)).)))..........(((((.......)))))..))))))))))))...............................................................................
........................................................................................89..................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR040043(GSM532928)
G428T. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
.............................................................................................TGAGGGAGGAGGTAGTATA..........................................................................................................................................194.000.00----------------1.00-1.00----------------1.00--------1.00-----------------
.............................................................................................TGAGGGAGGAGGTAGTGTG..........................................................................................................................................193.000.00---------------1.00--------1.00---------------------1.00---------------
.............................................................................................TGAGGGAGGAGGTAGAATA..........................................................................................................................................193.000.003.00-------------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGTCTG..........................................................................................................................................192.000.002.00-------------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGAAGA..........................................................................................................................................192.000.002.00-------------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGCATA..........................................................................................................................................192.000.002.00-------------------------------------------------------------
.......................................................................................GAGGACTGAGGGAGGAGGTA...............................................................................................................................................2012.002.00-------2.00------------------------------------------------------
...........................................ACCCGAGGTGAGCGCAGGT............................................................................................................................................................................................1912.002.00---------2.00----------------------------------------------------
.......................................................................................................................................................GTCTGCGGTGCCTCCATC.................................................................................181.000.00------------1.00-------------------------------------------------
...............................................................................................AGGGAGGAGGTAGCCTAG.........................................................................................................................................1811.001.00-------------------------1.00------------------------------------
..............................CGGCCGCGGCGGGACCCCGA........................................................................................................................................................................................................201.000.00---------------------------1.00----------------------------------
.................................................................................................................................GATCGGGGGTGGCAGAA........................................................................................................171.000.00----1.00---------------------------------------------------------
...................................................................................................................................................................TCCCCCTCGCTTTCATTCCTT..................................................................2111.001.00-----1.00--------------------------------------------------------
............................................CCCGAGGTGAGCGCAGGT............................................................................................................................................................................................1811.001.00--------------------------------1.00-----------------------------
................................................AGGTGAGCGCAGGTCGCC........................................................................................................................................................................................1811.001.00-------------------------------------1.00------------------------
.............................................................................................TGAGGGAGGAGGTAGATAA..........................................................................................................................................191.000.001.00-------------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGTGTT..........................................................................................................................................191.000.00-------------1.00------------------------------------------------
........................................................................................AGGACTGAGGGAGGAGTGGG..............................................................................................................................................201.000.00--------------1.00-----------------------------------------------
...................................................................................................................................TCGGGGGTGGCAGGGTGCTTA..................................................................................................211.000.00-------------------------------1.00------------------------------
...............................................................................................................................................................................................CAAGCTTGATCCCCTCTCCGTGGA...................................241.000.00---------------------1.00----------------------------------------
.............................................................................................TGAGGGAGGAGGTAGAGTG..........................................................................................................................................191.000.001.00-------------------------------------------------------------
...................................................................................CCGGGAGGACTGAGGGAG.....................................................................................................................................................1811.001.00-------------------1.00------------------------------------------
.........CGCCTCCCCCGGCTCCGCC..............................................................................................................................................................................................................................191.000.00---------------------------------------------1.00----------------
....................................................................................................................................CGGGGGTGGCAGGGTTCG....................................................................................................181.000.00------1.00-------------------------------------------------------
.................................................................................................................CGGGAGAAGAGGCAGGGATCGGGGGTGG.............................................................................................................2811.001.00---------------------------------------1.00----------------------
.........CGCCTCCCCCGGCTCCTCC..............................................................................................................................................................................................................................191.000.00---------------------------------1.00----------------------------
.............................................................................................TGAGGGAGGAGGTAGCCTCGAT.......................................................................................................................................221.000.00------------------------------------1.00-------------------------
.............................................................................................TGAGGGAGGAGGTAGCGTGA.........................................................................................................................................201.000.00--------1.00-----------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGCAAAG.........................................................................................................................................201.000.001.00-------------------------------------------------------------
.......................................CGGGACCCGAGGTGAGCGCAGGTCGCCGGCCGCGCCTG.............................................................................................................................................................................3811.001.00------------------------------1.00-------------------------------
.............................................................................................TGAGGGAGGAGGTAGCAGTA.........................................................................................................................................201.000.00--------------------1.00-----------------------------------------
..................CGGCTCAGCCCCCGGCGGT.....................................................................................................................................................................................................................191.000.00------1.00-------------------------------------------------------
......................................................GCGCAGGTCGCCGGCCGC..................................................................................................................................................................................1811.001.00--------------------------------------1.00-----------------------
.............................................................................................TGAGGGAGGAGGTAGTAGG..........................................................................................................................................191.000.001.00-------------------------------------------------------------
............................................CCCGAGGTGAGCGCAGGTCGCCG.......................................................................................................................................................................................2311.001.00-----------------------------------------1.00--------------------
.............................................................................................TGAGGGAGGAGGTAGCA............................................................................................................................................171.000.00---1.00----------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGCATAG.........................................................................................................................................201.000.00--1.00-----------------------------------------------------------
...........CCTCCCCCGGCTCAGCGG.............................................................................................................................................................................................................................181.000.00-1.00------------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGCGTA..........................................................................................................................................191.000.00----------------------1.00---------------------------------------
................................................AGGTGAGCGCAGGTCGCCGGCC....................................................................................................................................................................................2211.001.00-----------------------1.00--------------------------------------
..........................CCCCCGGCCGCGGCGGGG..............................................................................................................................................................................................................181.000.00----------------------------------1.00---------------------------
........................................................................................................................................................................................................TCCCCTCTCCGTGGGGGAAGCAGCCG........................2611.001.00-----1.00--------------------------------------------------------
................CCCGGCTCAGCCCCCTCCC.......................................................................................................................................................................................................................191.000.00--1.00-----------------------------------------------------------
............................................................................................................................................................................................................................CAGCCGCGGAACAAAACTG...........1911.001.00------------------------------------------1.00-------------------
....................GCTCAGCCCCCGGCCAGGG...................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------
............................................................................................................................GCAGGGATCGGGGGTGAGTC..........................................................................................................201.000.00--1.00-----------------------------------------------------------
..............................CGGCCGCGGCGGGAC.............................................................................................................................................................................................................1521.001.00-----0.50------------------------------------------------0.50-------
.........................................................................................................................................................................................CTCCCCCAAGCTTGAAGC...............................................181.000.00--------------------------------------------------1.00-----------
............................CCCGGCCGCGGCGGGGA.............................................................................................................................................................................................................171.000.00-1.00------------------------------------------------------------
....................................................................................................................................CGGGGGTGGCAGGGTGGTT...................................................................................................191.000.00-----------------1.00--------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGTCGG..........................................................................................................................................191.000.001.00-------------------------------------------------------------
.......................................................................................GAGGACTGAGGGAGGATA.................................................................................................................................................181.000.00---1.00----------------------------------------------------------
..............................CGGCCGCGGCGGGACCGA..........................................................................................................................................................................................................181.000.00---------------------------------------------------1.00----------
.......................................................................................................................................................GTCTGCGGTGCCTCCCCCT................................................................................1911.001.00------------------------------------------------1.00-------------
.............................................................................................TGAGGGAGGAGGTAGCCTAGAT.......................................................................................................................................221.000.00---1.00----------------------------------------------------------
.............................................................................................TGAGGGAGGAGGTAGTCTA..........................................................................................................................................191.000.001.00-------------------------------------------------------------
..................................CGCGGCGGGACCCGAG........................................................................................................................................................................................................1620.500.50----------------------------------------------------0.50---------
................................................................................................................GCGGGAGAAGAGGCAGG.........................................................................................................................1720.500.50----------0.50---------------------------------------------------
..................................................GTGAGCGCAGGTCGCCGG......................................................................................................................................................................................1820.500.50-------------------------------------------------------0.50------
...................................................................................CCGGGAGGACTGAGG........................................................................................................................................................1550.400.40--------------------------------------------------------0.40-----
...............................GGCCGCGGCGGGACC............................................................................................................................................................................................................1530.330.33-----------0.33--------------------------------------------------
........................................................................................................................AGAGGCAGGGATCGG...................................................................................................................1550.200.20----------------------------------------------------------0.20---

Antisense strand
CTCGCACTCCGCCTCCCCCGGCTCAGCCCCCGGCCGCGGCGGGACCCGAGGTGAGCGCAGGTCGCCGGCCGCGCCTGCTGGAGCCGGGAGGACTGAGGGAGGAGGTAGCCTAGCGGGAGAAGAGGCAGGGATCGGGGGTGGCAGGGTGGGCGTCTGCGGTGCCTCCCCCTCGCTTTCATTCCTTTCTCCCCCAAGCTTGATCCCCTCTCCGTGGGGGAAGCAGCCGCGGAACAAAACTGTCTTGCTTTGG
..............................................................................................(((((.(((((((.(((.((..........)).)))..........(((((.......)))))..))))))))))))...............................................................................
........................................................................................89..................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR040043(GSM532928)
G428T. (cervix)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
..........................CCCGCCGCGGCCGGGGG............................................................................................................................................................................................................... 1712.002.00-1.00---------------------------------------------1.00--------------
............................................................................................................................................................................................................CTCTCCGTGGGGGAACCA............................ 182.000.00-----------1.00----------------1.00---------------------------------
.........................GCCCCCGGCCGCGGCGGGC.............................................................................................................................................................................................................. 191.000.00-----------------------------1.00--------------------------------
.................................CCGCGGCGGGACCCGATC....................................................................................................................................................................................................... 181.000.00----------------------------------------1.00---------------------
................................................................................................................................................................GCCTCCCCCTCGCTTTAC........................................................................ 181.000.00-------------------------------------------------1.00------------
.........................................................CAGGTCGCCGGCCGCGACG.............................................................................................................................................................................. 191.000.00----------1.00---------------------------------------------------
...............................GGCCGCGGCGGGACCCCCCA....................................................................................................................................................................................................... 201.000.00--------1.00-----------------------------------------------------
..............................................................................................................................................................GTGCCTCCCCCTCGCTTGAG........................................................................ 201.000.00----1.00---------------------------------------------------------
...........................CCCGCCGCGGCCGGGG............................................................................................................................................................................................................... 1621.001.00-1.00------------------------------------------------------------
....................................................................................................................................................................CCCCCTCGCTTTCATGCGG................................................................... 191.000.00----1.00---------------------------------------------------------
..................................................................................CCTCCCTCAGTCCTCCCGGC.................................................................................................................................................... 2011.001.00--------------------------1.00-----------------------------------
............................CCCGCCGCGGCCGGG............................................................................................................................................................................................................... 1540.750.75-0.25---------------------------------------------------0.50--------
..............................................................................................................................................................................................GGGGATCAAGCTTGG............................................. 1530.330.33---------------------------------------------------------0.33----
............................CCCGGCCGCGGCGGGAG............................................................................................................................................................................................................. 170.250.00-0.25------------------------------------------------------------
............................CCCGGCCGCGGCGGGA.............................................................................................................................................................................................................. 160.250.00-0.25------------------------------------------------------------
...........................CCCCGGCCGCGGCGGTT.............................................................................................................................................................................................................. 170.220.00-----------0.11-------------------------------------------------0.11
..........................CGCCGCGGCCGGGGG................................................................................................................................................................................................................. 1580.120.12-----------------------------------------------------------0.12--
...........................CCGCCGCGGCCGGGG................................................................................................................................................................................................................ 1590.110.11------------------------------------------------------------0.11-