ID: uc010fgu.1_intron_8_0_chr2_87113853_f.5p
GENE: LOC100286979(9)
chr2:87113803-87114052+


(2)
AGO2.ip
(1)
B-CELL
(3)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(2)
HEART
(3)
LIVER
(2)
OTHER
(6)
SKIN

Sense strand
CTGTTCAAAATGTGCATTCTGTGTGGACTCTCCGGAGAGTCAAATCAGAGGTAAGGAGAAAGGCAAGTCACTTCTCCTTAACAGGAAAGGGTAGGCTGGGTGCACTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTGAGGTCAGGACGTTCAAGACCAGCCTGGCCAACGTGGTGAAACCCCATCTATACCAAAAATATAAAAAATTAGCCAGGTGTGGTGGCTTCT
................................................................................................................(((((((..((((((....))))))((((.((((.((.((((..((((....))))..))))....)).)))))))).))).))))....................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR189786GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM339994(GSM339994)
hues6. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCG......................................................2138.000.0032.005.00--1.00-----------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCA......................................................2130.000.0025.004.00--1.00-----------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGTG......................................................2421.000.009.0012.00--------------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGGTG......................................................2218.000.007.0011.00--------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGCG......................................................2411.000.008.003.00--------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGC.......................................................2010.000.0010.00---------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCGA.....................................................228.000.008.00---------------------------------
...........................................................................................................................................................................TTCAAGACCAGCCTGGCCAACGGTG......................................................257.000.004.003.00--------------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGGCG......................................................227.000.005.002.00--------------------------------
...........................................................................................................GCTCACACCTGTAATCCTCTG..........................................................................................................................215.000.00-------2.001.00-1.00-------------1.00---------
....................................................................................................................................TGGGAGGCCAAGGCAGGCGGGGC...............................................................................................235.000.001.004.00--------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGCA......................................................244.000.002.002.00--------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGTGA.....................................................254.000.00-4.00--------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGC.......................................................233.000.003.00---------------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGGCA......................................................223.000.002.001.00--------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGAGA.....................................................252.000.001.001.00--------------------------------
.................................................................................................................................................................................ACCAGCCTGGCCAACGGCG......................................................192.000.002.00---------------------------------
...................................................................................................................................TTGGGAGGCCAAGGCAGGCGGGGC...............................................................................................242.000.00-2.00--------------------------------
........................................................................................................................................................................................TGGCCAACGTGGTGAAACCCCAAAG.........................................252.000.00------------1.00-1.00-------------------
..........................................................................................................................................................................GTTCAAGACCAGCCTGGCCAACGGTG......................................................262.000.00-2.00--------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGC...............................................................................................272.000.001.001.00--------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCAA.....................................................222.000.002.00---------------------------------
............................................................................................................................TAGCACTTTGGGAGGCCAAGGCAGCGG...................................................................................................272.000.002.00---------------------------------
...........................................................................................................................................................................TTCAAGACCAGCCTGGCCAACGGAG......................................................252.000.00-2.00--------------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGGC.......................................................212.000.001.001.00--------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGACA.....................................................221.000.00-1.00--------------------------------
...........................................................................................................................................................................TTCAAGACCAGCCTGGCCAACGGCCG.....................................................261.000.001.00---------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGAACGC.............................................................................................291.000.001.00---------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGGGA.....................................................251.000.001.00---------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGAC...............................................................................................271.000.00-1.00--------------------------------
...............................................................................................................................CACTTTGGGAGGCCAAGGCAGGCGGGGC...............................................................................................281.000.00-1.00--------------------------------
.............................................................................................................................AGCACTTTGGGAGGCCAAGGCAGGCGGGGT...............................................................................................301.000.00-1.00--------------------------------
...............................................................................................................................CACTTTGGGAGGCCAAGGCAGGCGGAA................................................................................................271.000.00-----1.00----------------------------
............................................................................................AGGCTGGGTGCACTGGCGCG..........................................................................................................................................201.000.00-1.00--------------------------------
............TGCATTCTGTGTGGACTCCCCG........................................................................................................................................................................................................................221.000.00---1.00------------------------------
............................................................................................AGGCTGGGTGCACTGGCTCACACCCG....................................................................................................................................261.000.001.00---------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGAG......................................................241.000.001.00---------------------------------
....................................................................................................................................TGGGAGGCCAAGGCAGGCGGGCCC..............................................................................................241.000.00-1.00--------------------------------
.............................................................................................................TCACACCTGTAATCCTAGCACTAGAA...................................................................................................................261.000.00--------------------------1.00-------
.................................................................................................................................................CAGGCGGATCACTTGAGGTCACCAG................................................................................251.000.00-1.00--------------------------------
........................................................................................................................................................................................TGGCCAACGTGGTGAAACCCCATAAA........................................261.000.00----------------1.00-----------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCC......................................................211.000.001.00---------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGTGG.....................................................251.000.001.00---------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGCA..............................................................................................281.000.00-1.00--------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGG................................................................................................261.000.00-1.00--------------------------------
.........................................................................................................................................................................CGTTCAAGACCAGCCTGA...............................................................181.000.00-----1.00----------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGTGGTAGTC.................................................271.000.00------1.00---------------------------
.............................................................................................................................AGCACTTTGGGAGGCCAAGGCAGGCGGG.................................................................................................281.000.00-------------------1.00--------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGAAGCG.............................................................................................291.000.00-1.00--------------------------------
..............................................................................................................................................................................AAGACCAGCCTGGCCAACGGGGA.....................................................231.000.001.00---------------------------------
............................................................................................................................................................................TCAAGACCAGCCTGGCCAACGGCGA.....................................................251.000.001.00---------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCT......................................................211.000.00-1.00--------------------------------
................TTCTGTGTGGACTCTCCGGAT.....................................................................................................................................................................................................................211.000.00----------------------1.00-----------
..........................................................................................................GGCTCACACCTGTAATCCTCTG..........................................................................................................................221.000.00---------1.00------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGCGG.....................................................221.000.001.00---------------------------------
...........................................................................................................................................................................TTCAAGACCAGCCTGGCCAACGGTGA.....................................................261.000.00-1.00--------------------------------
...............................................................................................................................................................................AGACCAGCCTGGCCAACGGTGC.....................................................221.000.001.00---------------------------------
................................................................................................................................ACTTTGGGAGGCCAAGGCAGGCGGGGG...............................................................................................271.000.00-1.00--------------------------------
...........................................................................................................................................................................TTCAAGACCAGCCTGGCCAACGGCG......................................................251.000.001.00---------------------------------
.............................................................................................................................AGCACTTTGGGAGGCCAAGGCAGGCGGGCTC..............................................................................................311.000.00-1.00--------------------------------
.................................................................................................................................CTTTGGGAGGCCAAGGCAGGCGGGGG...............................................................................................261.000.00-1.00--------------------------------
..........................ACTCTCCGGAGAGTCAAATCAG..........................................................................................................................................................................................................2230.670.67------------------------------0.67---
........AATGTGCATTCTGTGTGGACTCTCCGGA......................................................................................................................................................................................................................2830.330.33----------------------------0.33-----
................TTCTGTGTGGACTCTCCGGAG.....................................................................................................................................................................................................................2130.330.33------0.33---------------------------
...........GTGCATTCTGTGTGGACTCTCCGGA......................................................................................................................................................................................................................2530.330.33-------------------------------0.33--
..........TGTGCATTCTGTGTGGACTCTCCGGA......................................................................................................................................................................................................................2630.330.33------0.33---------------------------
.....................TGTGGACTCTCCGGAGAGT..................................................................................................................................................................................................................1930.330.33-----------------------------0.33----
...............ATTCTGTGTGGACTCTCCGGA......................................................................................................................................................................................................................2130.330.33----------------------------0.33-----
.....................TGTGGACTCTCCGGAGAG...................................................................................................................................................................................................................1830.330.33-----------------------------0.33----
................................................AGGTAAGGAGAAAGGC..........................................................................................................................................................................................1660.330.33---------0.17----------------------0.17-
........AATGTGCATTCTGTGTGGACTCTCCGGAGAGT..................................................................................................................................................................................................................3230.330.33--------0.33-------------------------
.................TCTGTGTGGACTCTCCGGAGAGT..................................................................................................................................................................................................................2330.330.33------0.33---------------------------
.........................................................................................................................................................................CGTTCAAGACCAGCCTGGCCAACGTG.......................................................2690.110.11---------------------------------0.11

Antisense strand
CTGTTCAAAATGTGCATTCTGTGTGGACTCTCCGGAGAGTCAAATCAGAGGTAAGGAGAAAGGCAAGTCACTTCTCCTTAACAGGAAAGGGTAGGCTGGGTGCACTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCGGATCACTTGAGGTCAGGACGTTCAAGACCAGCCTGGCCAACGTGGTGAAACCCCATCTATACCAAAAATATAAAAAATTAGCCAGGTGTGGTGGCTTCT
................................................................................................................(((((((..((((((....))))))((((.((((.((.((((..((((....))))..))))....)).)))))))).))).))))....................................................
......................................................................................................103..............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189784SRR189786GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189785SRR037931(GSM510469)
293GFP. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM339994(GSM339994)
hues6. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
................................................................................................................................................................................GACCAGCCTGGCCAACGTAATC.................................................... 227.000.00--7.00-------------------------------
.........................................................................................................................................GGCCAAGGCAGGCGGATCACTCGCC........................................................................................ 252.000.002.00---------------------------------
...........................................................................................................GCTCACACCTGTAATCCTAGCACTGTC.................................................................................................................... 272.000.00-2.00--------------------------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGCCC................................................. 232.000.00-2.00--------------------------------
...............................................................................................................................................GGCAGGCGGATCACTTGAGGTCACGG................................................................................. 262.000.002.00---------------------------------
..........................................................................................................................................................................................GCCAACGTGGTGAAACCCCATAACG....................................... 251.000.00---1.00------------------------------
...............................................................................................................................................GGCAGGCGGATCACTTGAGGC...................................................................................... 211.000.00-------------------------1.00--------
...................................................................................................................................................................................CAGCCTGGCCAACGTGGTGAAACCCC............................................. 261.000.001.00---------------------------------
......................................................................................................................................................................................CCTGGCCAACGTGGTGAAGCTC.............................................. 221.000.001.00---------------------------------
..........................................................................................................................................................................GTTCAAGACCAGCCTGGCCAACGTGGTCCCC................................................. 311.000.001.00---------------------------------
.............................................................................................................TCACACCTGTAATCCTAGCACTTCG.................................................................................................................... 251.000.00-1.00--------------------------------
....................................................................................................................................................GCGGATCACTTGAGGTCAAAT................................................................................. 211.000.00--------------------1.00-------------
..................................................................................................GGTGCACTGGCTCACACCTGTGGAC............................................................................................................................... 251.000.001.00---------------------------------
...........................................................................................................................................CCAAGGCAGGCGGATCAAAA........................................................................................... 201.000.00-----------------1.00----------------
.........................................................................................................................................GGCCAAGGCAGGCGGATCACTTCCTG....................................................................................... 261.000.00-1.00--------------------------------
.....................................................................................................................................................................................GCCTGGCCAACGTGGTGAAACCCCTG........................................... 261.000.00---------------------------1.00------
..................................................................................................GGTGCACTGGCTCACACCTGTGACC............................................................................................................................... 251.000.001.00---------------------------------
.................................................................................................GGGTGCACTGGCTCACACCTGTGGAC............................................................................................................................... 261.000.001.00---------------------------------
.........................................................................................................................................GGCCAAGGCAGGCGGATCACTCTG......................................................................................... 241.000.001.00---------------------------------
....................................................................................................................................................GCGGATCACTTGAGGTCAGGACGTAC............................................................................ 261.000.00-1.00--------------------------------
......................................GTCAAATCAGAGGTAAGAGCC............................................................................................................................................................................................... 211.000.00---------------1.00------------------
......................................................................................................................................................................................CCTGGCCAACGTGGTGAAAGTC.............................................. 221.000.001.00---------------------------------
................................................................................................................................................GCAGGCGGATCACTTGAGGTCAAC.................................................................................. 241.000.00----1.00-----------------------------
................................................................................................................................................................................GACCAGCCTGGCCAACGTGGTGGGA................................................. 251.000.001.00---------------------------------
........................................................................................................................................................................................TGGCCAACGTGGTGAAACCCCATCT......................................... 251.000.00-------------1.00--------------------
........................................................................................................................................................................................................ACCCCATCTATACCACTTT............................... 191.000.00-1.00--------------------------------
..................................................................GTCACTTCTCCTTAAGAAA..................................................................................................................................................................... 191.000.00-----------------------1.00----------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGAAGCCC.............................................. 261.000.00-1.00--------------------------------
..........................................................................................................................................................................................GCCAACGTGGTGAAACCCCATTAAG....................................... 251.000.00---1.00------------------------------
.............................................................................................GGCTGGGTGCACTGGCTCACACCTGTCACA............................................................................................................................... 301.000.001.00---------------------------------
..................................................................................................................................................................................................GGTGAAACCCCATCTATACGCG.................................. 221.000.001.00---------------------------------
.......................................................................................................................................GAGGCCAAGGCAGGCGGATCACTTCCC........................................................................................ 271.000.001.00---------------------------------
.....................................................................................................GCACTGGCTCACACCTGTCTTG............................................................................................................................... 221.000.001.00---------------------------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGAAACGGGC............................................ 281.000.001.00---------------------------------
..........................................................................................................................................................................GTTCAAGACCAGCCTGGCCAACGTCCCC.................................................... 281.000.001.00---------------------------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGCTA.................................................... 201.000.00-1.00--------------------------------
...................................................................................................................................................GGCGGATCACTTGAGGTCAATAA................................................................................ 231.000.00-----------1.00----------------------
................................................................................................................................................................................GACCAGCCTGGCCAACGTGGTGAGCCC............................................... 271.000.001.00---------------------------------
......................................................................................................................................................................................CCTGGCCAACGTGGTGAAACCCCAGTC......................................... 271.000.001.00---------------------------------
...........................................................................................................................................................................................................................TATAAAAAATTAGCCAGAGAA.......... 211.000.00------------------1.00---------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGAAAGGTT............................................. 271.000.00-1.00--------------------------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGCC.................................................. 221.000.00-1.00--------------------------------
.........................................................................................................................................................................................GGCCAACGTGGTGAAACCCCATGAC........................................ 251.000.00---1.00------------------------------
................................................................................................................................................................................................GTGGTGAAACCCCATCTAA....................................... 191.000.00---------------------1.00------------
.................................................................................................................................................................................ACCAGCCTGGCCAACGTGGTTGG.................................................. 231.000.001.00---------------------------------
..................................................................................................................................................................................CCAGCCTGGCCAACGTGGTGAAAAAC.............................................. 261.000.001.00---------------------------------
...............................................................................................................................................................................................CGTGGTGAAACCCCACCGG........................................ 191.000.00-1.00--------------------------------
.................................................................................................................................................................................ACCAGCCTGGCCAACGTGGTGAGGG................................................ 251.000.00-1.00--------------------------------
.............................................................................................................................................................................................AACGTGGTGAAACCCCATCTCAGG..................................... 241.000.00-1.00--------------------------------
...................................................................................................................................................................................ATAGATGGGGTTTCACCACGTTGGCCAGGCTG....................................... 3260.330.33-0.33--------------------------------
.....................................................................................................................................................................................TATAGATGGGGTTTCACCACGTTGGCCAGGC...................................... 3170.290.290.29---------------------------------
......................................................................................................................................................................................ATAGATGGGGTTTCACCACGTTGGCCAGG....................................... 2980.120.120.12---------------------------------