ID: uc010fgg.2_intron_3_0_chr2_85589384_f.3p
GENE: ELMOD3(4)
chr2:85598009-85598258+


(2)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(6)
BREAST
(13)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(24)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AATCTGGGAGCTGGAAGAGCCTGGCTCTAGAGACTCAACAGGTGCCTTGCAGCTTCTGCCTCCTTCCCTTGGCCCAAAGGCCAGCCAGATAGCTGGGGGAGTTACTTTCTGCAAGCACTGCCTCTGGTCTGAGCCTGATGGGAAGTTGATTAAGGGAAATGAACCAGCATTCTGCCCATTGCCTGCAACTTCTTCCCCAGAAAAGAATCCAGCCAACTATTCGAAGGACTGGGCTCGCCGCCCTCCGACA
......................................................................................................................................(((..(((((((((....(((..((((...(((....)))..)))).))).)))))))))...)))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAGT.................................................23119.0010.002.004.00---1.003.00----1.00--2.00---1.00--1.00------------------1.001.00------1.00-1.00---------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAG..................................................22110.0010.007.00---1.00----------1.00----------------------------1.00---------------------
.........................................................................................................................................ATGGGAAGTTGATTAAGGGAAA...........................................................................................2215.005.00-4.00-------------------------1.00--------------------------------------
.........................................................................................................................................ATGGGAAGTTGATTAAGGGAA............................................................................................2115.005.00-------------2.00------------1.00----1.00-1.00--------------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAT..................................................2214.002.004.00-----------------------------------------------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCATT.................................................2313.002.002.00----1.00------------------------------------------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCATA.................................................2313.002.00-3.00----------------------------------------------------------------
..........................................................................................................................................TGGGAAGTTGATTAAGGGA.............................................................................................1912.002.00--------2.00---------------------------------------------------------
......................................................................................................TACTTTCTGCAAGCACTG..................................................................................................................................1812.002.00-----------------1.00-------------------------1.00----------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAA..................................................2212.002.002.00-----------------------------------------------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCA...................................................2112.002.002.00-----------------------------------------------------------------
........................................................................................................................................GATGGGAAGTTGATTAAGGG..............................................................................................2011.001.00----------------------------1.00-------------------------------------
.....................................................................................................................................................................AGCATTCTGCCCATTGTGT..................................................................191.000.00------------------------------1.00-----------------------------------
..........................................................................................................................................TGGGAAGTTGATTAAGGGAAATGAACC.....................................................................................2711.001.00------------------------------------------1.00-----------------------
....................................................................................................................................................................................................................................CTGGGCTCGCCGCCCGGGT...191.000.00----------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................ATTCGAAGGACTGGGCGATA............201.000.00--------------------------------1.00---------------------------------
....................................................................................................................................................................................................................CCAACTATTCGAAGGACTGG..................2011.001.00---------------------------------------1.00--------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAGC.................................................2311.0010.00---------1.00--------------------------------------------------------
........................................................................................................................................GATGGGAAGTTGATTAAGGGAAAT..........................................................................................2411.001.00--------------------------------------1.00---------------------------
..................................................................................................................................................................................TTGCCTGCAACTTCTTCCCCAGA.................................................2311.001.00------------------------1.00-----------------------------------------
.............................................................................................TGGGGGAGTTACTTTCC............................................................................................................................................171.000.00---------------------------------------------------1.00--------------
.........................................................................................................................................ATGGGAAGTTGATTAAGGGA.............................................................................................2011.001.00----------------------1.00-------------------------------------------
..........................CTAGAGACTCAACAGGTG..............................................................................................................................................................................................................1811.001.00---------------------------------------------1.00--------------------
......................................................................................................................................................................................................................AACTATTCGAAGGACTGGGCTCGCCGCC........2811.001.00-----------------------------------------------1.00------------------
...............................................................................................................................................................................................................................AAGGACTGGGCTCGC............1530.330.33-------------------------------------------------------0.33----------
........................................................................................................CTTTCTGCAAGCACTG..................................................................................................................................1630.330.33--------------------------------------------------------0.33---------

Antisense strand
AATCTGGGAGCTGGAAGAGCCTGGCTCTAGAGACTCAACAGGTGCCTTGCAGCTTCTGCCTCCTTCCCTTGGCCCAAAGGCCAGCCAGATAGCTGGGGGAGTTACTTTCTGCAAGCACTGCCTCTGGTCTGAGCCTGATGGGAAGTTGATTAAGGGAAATGAACCAGCATTCTGCCCATTGCCTGCAACTTCTTCCCCAGAAAAGAATCCAGCCAACTATTCGAAGGACTGGGCTCGCCGCCCTCCGACA
......................................................................................................................................(((..(((((((((....(((..((((...(((....)))..)))).))).)))))))))...)))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040041(GSM532926)
G612T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................................................................................TCGCCGCCCTCCGACCG 1710.000.00--7.00---------2.00----------------------1.00------------------------------
..........................................................................................................................................................................................................................................TCGCCGCCCTCCGACC 165.000.00---------------1.00-------------1.00------1.001.00-----------1.00----------------
..........................................................................................................................................................................................................................................TCGCCGCCCTCCGACCGG 183.000.00-------2.00---------------1.00------------------------------------------
..........................................................................................................................................................................TCTGCCCATTGCCTGCTAA............................................................. 192.000.00----1.00-----------------------------1.00-------------------------------
...........................................................................................................................................................................................................................................CGCCGCCCTCCGACAGCG 181.200.00-------0.40--------------------------------------------0.20----0.200.20-0.20-----
.........................................................................................................................................................................................................................................CTCGCCGCCCTCCGACGCTG 201.000.00----------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................................TCGCCGCCCTCCGACCGGC 191.000.00-------------------------1.00----------------------------------------
..........................................................................................................................................................................TCTGCCCATTGCCTGCTAGA............................................................ 201.000.00----1.00-------------------------------------------------------------
.......................................................................................................................................................................................................................................GGCTCGCCGCCCTCCGACGTG 211.000.00-----------1.00------------------------------------------------------
...........................................................................................................................................................................................................................................CGCCGCCCTCCGACAGCGG 191.000.00----------------------------------------------------0.40-0.20----0.20--0.20---
..........................................................................................................................................................................TCTGCCCATTGCCTGCTTA............................................................. 191.000.00----------------------------------------------1.00-------------------
...................................................................................................AGTTACTTTCTGCAAATCG.................................................................................................................................... 191.000.00-------------------1.00----------------------------------------------
............................AGAGACTCAACAGGTGCTA........................................................................................................................................................................................................... 191.000.00---------1.00--------------------------------------------------------
...................................................................................................AGTTACTTTCTGCAAATTG.................................................................................................................................... 191.000.001.00-----------------------------------------------------------------
......................................................TCTGCCTCCTTCCCTTGTA................................................................................................................................................................................. 191.000.00--------------------1.00---------------------------------------------
.......................................................................................................................................................................................TGCAACTTCTTCCCCATAG................................................ 191.000.00-----1.00------------------------------------------------------------
.........................................................TGGGCCAAGGGAAGGAGGC.............................................................................................................................................................................. 1921.001.00----------------1.00-------------------------------------------------
.........................................................GCCAAGGGAAGGAGGC................................................................................................................................................................................. 1670.570.57----------------0.29-----------------------------------------------0.140.14
.....................................................................................CTCCCCCAGCTATCTG..................................................................................................................................................... 1620.500.50-----------------------------------------------------0.50------------
...........................................................................................................................................................................................................................................TGTCGGAGGGCGGCG 1550.400.40------------------------------------------------------0.20------0.20----
.........................................................GGCCAAGGGAAGGAGGC................................................................................................................................................................................ 1740.250.25----------------0.25-------------------------------------------------
...........................................................................................................................................................................................................................................CGCCGCCCTCCGACACC 170.200.00-------0.20----------------------------------------------------------
...........................................................................................................................................................................................TTTTCTGGGGAAGAAGT.............................................. 1760.170.17---------------------------------------------------------------0.17--