ID: uc010fgf.2_intron_6_0_chr2_85576705_r.5p
GENE: (1)
chr2:85581259-85581508-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
B-CELL 		(3)
BREAST 		(19)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(2)
HELA 		(6)
LIVER 		(1)
OTHER 		(22)
SKIN 		(1)
XRN.ip

Sense strand
AGCGCCCCTGGTAACTGACAAGGAGGCCAGGAAGAAGGTTCTCAAACAAGGTAGCAGGAGGGACCCTGGGGTCCGGGGCTGCACTCGAGGCTTTCTCACAGATTTGGGTTCTCATTTTGCCAAGGCAGCCGCTACCAGACGTGGGCCTTAGTTTCCCCATATGTAAAGTACTAGGAGGGCTTCCTTGCACGTGGAGGAGCCCCGCTTTAGTGTGCAACACTGTCGATAGCCTTTGCCCTAGTAGGCCCCG
...................................................................((..((((((.(((.....(((.....))).))).))))))..)).....((.(((((.((((.((.((....(((((..........)))))..(((...)))..)))))))).))))))).............................................................
...................................................................68.......................................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR189787SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)
........................................................................CCGGGGCTGCACTCGCGC................................................................................................................................................................1826.000.0011.005.001.00--1.00-1.00---1.00-------2.00--1.00--1.00--------1.00---1.00----------------------------
.......................................................................TCCGGGGCTGCACTCGCGC................................................................................................................................................................1916.000.002.001.001.00--1.00-2.001.00--1.00---1.00-1.00---------------------1.00----------1.00--------1.00--1.00--1.00-
......................................................................GTCCGGGGCTGCACTCGCGC................................................................................................................................................................20111.004.001.003.001.001.00-----1.00---1.00-1.00--------------1.001.00-----------------------------------
......................................................................GTCCGGGGCTGCACTCGCGCT...............................................................................................................................................................2118.004.00------3.00--1.00-----1.00-------2.00-------------------------------1.00-----------
........................................................................CCGGGGCTGCACTCGCGCT...............................................................................................................................................................197.000.002.00-2.00------1.00----------------------------------1.00---------------------1.00
......................................................................GTCCGGGGCTGCACTCGC..................................................................................................................................................................1817.004.00------------1.00-1.00------1.00--------------1.00----1.00-1.00-------------1.00---------
.......................................................................TCCGGGGCTGCACTCGCG.................................................................................................................................................................185.000.00--1.00----1.00-------------1.00---1.00-----------1.00-----------------------------
........................................................................CCGGGGCTGCACTCGC..................................................................................................................................................................164.000.00------------1.00-1.00-------1.00-----------------1.00--------------------------
.....................................................................GGTCCGGGGCTGCACGCGC..................................................................................................................................................................194.000.00--------1.00---------2.00---------------------------------------1.00--------
......................................................................GTCCGGGGCTGCACTCG...................................................................................................................................................................1714.004.00----3.00-----------------------------------------------------------1.00--
......................................................................GTCCGGGGCTGCACTCGCG.................................................................................................................................................................1913.004.001.00-----1.00-------------------------------------------------1.00----------
........................................................................CCGGGGCTGCACTCGCG.................................................................................................................................................................173.000.00----1.00-------1.00---------------1.00--------------------------------------
............................AGGAAGAAGGTTCTCAAACA..........................................................................................................................................................................................................2013.003.00---3.00---------------------------------------------------------------
.......................................................................TCCGGGGCTGCACTCGCGCT...............................................................................................................................................................202.000.001.00----------1.00-------------------------------------------------------
................GACAAGGAGGCCAGGAAGAAGG....................................................................................................................................................................................................................2212.002.00--------------------2.00----------------------------------------------
.......................................................................TCCGGGGCTGCACTCACGC................................................................................................................................................................192.000.00-----1.00-----------------------------------------1.00-------------------
.......................................................................TCCGGGGCTGCACTCGC..................................................................................................................................................................172.000.00-------------2.00-----------------------------------------------------
...........................CAGGAAGAAGGTTCTCAA.............................................................................................................................................................................................................1821.501.50---------------------------1.50---------------------------------------
......................GAGGCCAGGAAGAAGCCG..................................................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00---
..........GTAACTGACAAGGAGGC...............................................................................................................................................................................................................................1711.001.00------------------------------------------1.00------------------------
...................................................................................................AGATTTGGGTTCTCATTTTGCCAAGGCAG..........................................................................................................................2911.001.00-----------------------------------------------------1.00-------------
.....................................................................GGTCCGGGGCTGCACGCG...................................................................................................................................................................181.000.00--------1.00----------------------------------------------------------
...................................................................................................................................................................TAAAGTACTAGGAGGGCTGGCT.................................................................221.000.00----------1.00--------------------------------------------------------
.......................................................................TCCGGGGCTGCACTCGTGA................................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------
............................AGGAAGAAGGTTCTCAAACAAGCT......................................................................................................................................................................................................241.000.00-----------------1.00-------------------------------------------------
...................................................................................................................................................................TAAAGTACTAGGAGGGCAGGT..................................................................211.000.00----------1.00--------------------------------------------------------
.................................................................................................ACAGATTTGGGTTCTCATTTTG...................................................................................................................................2211.001.00----------------1.00--------------------------------------------------
........................GGCCAGGAAGAAGGTTCTCAAACAA.........................................................................................................................................................................................................2511.001.00---1.00---------------------------------------------------------------
..................................................................TGGGGTCCGGGGCTGCGTC.....................................................................................................................................................................191.000.00---------------------------------------------------1.00---------------
........................................................................CCGGGGCTGCACTCGCGA................................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------
................................AGAAGGTTCTCAAACAAG........................................................................................................................................................................................................1811.001.00----------------------------------------------1.00--------------------
.....CCCTGGTAACTGACAAGGAGGC...............................................................................................................................................................................................................................2211.001.00--------------------------1.00----------------------------------------
...................AAGGAGGCCAGGAAGAAGGT...................................................................................................................................................................................................................2011.001.00----------------1.00--------------------------------------------------
............................................................GGACCCTGGGGTCCGGGGCTGCACTCGAGGCT..............................................................................................................................................................3211.001.00-------------------------------------------------1.00-----------------
...................................................................................................................................................................TAAAGTACTAGGAGGGCTGGTA.................................................................221.000.00----------1.00--------------------------------------------------------
......CCTGGTAACTGACAAGGAGGC...............................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------1.00-----
........................................................................CCGGGGCTGCACTCGCGCA...............................................................................................................................................................191.000.001.00------------------------------------------------------------------
.....................................................................GGTCCGGGGCTGCACGC....................................................................................................................................................................171.000.00-----------------------------------1.00-------------------------------
......................................................................GTCCGGGGCTGCACTC....................................................................................................................................................................1611.001.001.00------------------------------------------------------------------
..............................GAAGAAGGTTCTCAAACAAGGAA.....................................................................................................................................................................................................231.000.00--------------1.00----------------------------------------------------
.................ACAAGGAGGCCAGGAAGAAGGT...................................................................................................................................................................................................................2211.001.00----------------------------------------------------1.00--------------
..............................................................................................................................................................ATATGTAAAGTACTAATTG.........................................................................191.000.00---------------------------------------------1.00---------------------
.................................................................CTGGGGTCCGGGGCTAAA.......................................................................................................................................................................181.000.00------------------------------------------------1.00------------------
.........................GCCAGGAAGAAGGTTCTCAAACA..........................................................................................................................................................................................................2311.001.00----------------1.00--------------------------------------------------
.......................................................................TCCGGGGCTGCACTCGCTC................................................................................................................................................................191.000.00---------------------------------1.00---------------------------------
......................................................................GTCCGGGGCTGCACTCAC..................................................................................................................................................................1811.001.00-----1.00-------------------------------------------------------------
.......CTGGTAACTGACAAGGAGGC...............................................................................................................................................................................................................................2011.001.00--------------------------1.00----------------------------------------
......................................................................GTCCGGGGCTGCACTAAG..................................................................................................................................................................181.000.00--------------------------------1.00----------------------------------
..........................CCAGGAAGAAGGTTCTCAA.............................................................................................................................................................................................................1920.500.50-----------------0.50-------------------------------------------------

Antisense strand
AGCGCCCCTGGTAACTGACAAGGAGGCCAGGAAGAAGGTTCTCAAACAAGGTAGCAGGAGGGACCCTGGGGTCCGGGGCTGCACTCGAGGCTTTCTCACAGATTTGGGTTCTCATTTTGCCAAGGCAGCCGCTACCAGACGTGGGCCTTAGTTTCCCCATATGTAAAGTACTAGGAGGGCTTCCTTGCACGTGGAGGAGCCCCGCTTTAGTGTGCAACACTGTCGATAGCCTTTGCCCTAGTAGGCCCCG
...................................................................((..((((((.(((.....(((.....))).))).))))))..)).....((.(((((.((((.((.((....(((((..........)))))..(((...)))..)))))))).))))))).............................................................
...................................................................68.......................................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR189787SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)
.....................................................................................................................................................AGTTTCCCCATATGTAGTGG................................................................................. 201.000.00------------------------------------------------------------1.00------
............................................................................................................................................................................................................................CTACTAGGGCAAAGGCTATCGACA...... 2411.001.00------------------------------------------------------1.00------------
.................................................................................................................................................................................CCTCCACGTGCAAGGAAGCC..................................................... 2011.001.00------------------------1.00------------------------------------------
..........................................................................GGGGCTGCACTCGAGTGG.............................................................................................................................................................. 181.000.00-----------------------------1.00-------------------------------------
..................................................................................................TGGCAAAATGAGAACCCAAATCTG................................................................................................................................ 2411.001.00------------------------1.00------------------------------------------