ID: uc010fgb.2_intron_23_0_chr2_84847029_f.3p
GENE: (24)
chr2:84848115-84848364+


(1)
B-CELL
(2)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(6)
CERVIX
(4)
HEART
(3)
LIVER
(1)
OTHER
(2)
SKIN
(1)
XRN.ip

Sense strand
CTCCAAGTGGAAGCAGTAAAATAAAGCAATAGGTGGGGTGAAAGGAGATAGATGCATAGTGGAATGTCAATAGAAGTTTCAGTATTTGTGGTCAGGCTTCAGCGTTTATGTAGCTTAGGATTCTGTAATGGAAATACAGAAGGCATACAGCTTACAAGTCCCACACAAGCCACTTTATCAATGCTCTGATTACCTTTTAGGTTAGCTTGGGGAAAGGCCTCAAGGCCCGAGGCAATGTAGAGGAATGGCT
.....................................................(((((.((((((.((....)).)))))).))..)))...(((..((((((.........)))..)))..))).............................................................................................................................
..................................................51.........................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040025(GSM532910)
G613T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040010(GSM532895)
G529N. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040028(GSM532913)
G026N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................GTTTATGTAGCTTAGCTCC................................................................................................................................1922.000.004.00-4.002.003.001.002.00-----1.00-----1.00----1.00---1.00---1.00-1.00--
.......................................................................................................GTTTATGTAGCTTAGCTC.................................................................................................................................1814.000.002.00-1.001.00-2.00-2.002.00-----1.00-------1.00-1.00-------1.00---
......................................................................................................CGTTTATGTAGCTTACC...................................................................................................................................1733.670.33-3.67----------------------------------
.......................................................................................................GTTTATGTAGCTTAGGTGTT...............................................................................................................................203.000.003.00-----------------------------------
......................................................................................................CGTTTATGTAGCTTACCT..................................................................................................................................1832.330.33-2.33----------------------------------
.......................................................................................................GTTTATGTAGCTTAGCTTC................................................................................................................................192.000.00---------------1.00--------------1.00-----
.......................................................................................................GTTTATGTAGCTTAGTTCC................................................................................................................................192.000.001.00---------------1.00-------------------
.......................................................................................................GTTTATGTAGCTTAGGCTT................................................................................................................................192.000.00---------2.00--------------------------
.......................................................................................................GTTTATGTAGCTTAGCTGC................................................................................................................................191.000.001.00-----------------------------------
......................................................CATAGTGGAATGTCAATAGAA...............................................................................................................................................................................2111.001.00----------1.00-------------------------
.......................................................................................................GTTTATGTAGCTTAGCG..................................................................................................................................171.000.00-----------------------------1.00------
..............................................................................................................................................................................................................................AGGCCCGAGGCAATGTAGAGGAA.....2311.001.00--------------------------1.00---------
.......................................................................................................GTTTATGTAGCTTAGCTG.................................................................................................................................181.000.00---1.00--------------------------------
......................................................................................................CGTTTATGTAGCTTACCTC.................................................................................................................................1931.000.33-0.67---------0.33------------------------
.........................................................................................................................................................................................................................CCTCAAGGCCCGAGGCGGCA.............201.000.00----------------------------1.00-------
.......................................................................................................GTTTATGTAGCTTAGCGCC................................................................................................................................191.000.00---------------------1.00--------------
.......................................................................................................GTTTATGTAGCTTAGGTCCT...............................................................................................................................201.000.001.00-----------------------------------
.......................................................................................................GTTTATGTAGCTTAGCTCA................................................................................................................................191.000.00-----------1.00------------------------
......................................................................................................CGTTTATGTAGCTTAA....................................................................................................................................1630.670.33-0.67----------------------------------
......................................................................................................CGTTTATGTAGCTTAAAA..................................................................................................................................1830.670.33-0.67----------------------------------
......................................................................................................CGTTTATGTAGCTTACCA..................................................................................................................................1830.330.33-0.33----------------------------------
......................................................................................................CGTTTATGTAGCTTAAA...................................................................................................................................1730.330.33-0.33----------------------------------
......................................................................................................CGTTTATGTAGCTTACAAA.................................................................................................................................1930.330.33-0.33----------------------------------
......................................................................................................CGTTTATGTAGCTTAC....................................................................................................................................1630.330.33-0.33----------------------------------
......................................................................................................CGTTTATGTAGCTTA.....................................................................................................................................1530.330.33----------------------------------0.33-
.......TGGAAGCAGTAAAATA...................................................................................................................................................................................................................................1690.110.11-----------------------------------0.11

Antisense strand
CTCCAAGTGGAAGCAGTAAAATAAAGCAATAGGTGGGGTGAAAGGAGATAGATGCATAGTGGAATGTCAATAGAAGTTTCAGTATTTGTGGTCAGGCTTCAGCGTTTATGTAGCTTAGGATTCTGTAATGGAAATACAGAAGGCATACAGCTTACAAGTCCCACACAAGCCACTTTATCAATGCTCTGATTACCTTTTAGGTTAGCTTGGGGAAAGGCCTCAAGGCCCGAGGCAATGTAGAGGAATGGCT
.....................................................(((((.((((((.((....)).)))))).))..)))...(((..((((((.........)))..)))..))).............................................................................................................................
..................................................51.........................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040025(GSM532910)
G613T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040010(GSM532895)
G529N. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040028(GSM532913)
G026N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................TAGCTTAGGATTCTGGCG.......................................................................................................................... 181.000.00-------------------------1.00----------
.......................................................................AGAAGTTTCAGTATTTTTTG............................................................................................................................................................... 201.000.00-----------------1.00------------------
.......................................GAAAGGAGATAGATGGAGT................................................................................................................................................................................................ 191.000.00--------------------1.00---------------
...............................................................................................................................................................................TATCAATGCTCTGATTTCG........................................................ 191.000.00-------------------1.00----------------
.............................................................................................................................................................................TTTATCAATGCTCTGAG............................................................ 171.000.00-------------1.00----------------------
.........................................................................................................................................................CTTGTGTGGGACTTGT................................................................................. 1630.670.67----------0.67-------------------------