ID: uc010fep.2_intron_11_0_chr2_72740382_r.5p
GENE: (10)
chr2:72741563-72741812-


(10)
CELL-LINE 		(2)
HEART 		(1)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CAGCATGAAACTTTAGATGGCTACAGGAAGTATTTTAATCAAATTGTAGGGTAGGTATATATATATATATATATATATTTATTTATTTATTTATTTATTTATTTATTGAAATTTATACTCTTTCCATACATAGAGTTGTGAATGTTGGAAAAATAAATCAGGTTTTCCTTAGGAAATTCTTTTCATTTTCTTTTTTTTAATCCTTAAGACAAGATTTGTTTTTGATTTTCTAATGATTTAAAAGGAACAC
................................................................................................((((((((.((.(((((((((((((..........))))).)))))).)).)).)))))))).(((........((((((..........)))))).........)))..............................................
.....................................................................70........................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..........................................................................ATATTTATTTATTTATTTATTTATTTATCAAG................................................................................................................................................3224.000.007.003.006.008.00-----------------
..........................................................................ATATTTATTTATTTATTTATTTATCAAG....................................................................................................................................................2819.000.002.003.0010.004.00-----------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTATTG..............................................................................................................................................34818.8818.883.382.127.256.12-----------------
........................................................................................................................................................................................ATTTTCTTTTTTTTAACTCG..............................................2012.000.007.002.002.001.00-----------------
............................................................................ATTTATTTATTTATTTATTTATCATG....................................................................................................................................................266.000.003.003.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTCG....................................................................................................................................................286.000.00-2.001.003.00-----------------
......................................................................................................................................................................................TCATTTTCTTTTTTTTAATCTTTG............................................245.000.001.00-2.002.00-----------------
......................................................................ATATATATTTATTTATTTATTTATTTATTTTAAG..................................................................................................................................................345.000.001.001.00-3.00-----------------
...................................................................TATATATATATTTATTTATTTATTTATTTCTAG......................................................................................................................................................335.000.00-1.00-4.00-----------------
...........................................................................TATTTATTTATTTATTTATTTATTTATTTATCAG.............................................................................................................................................344.000.002.001.001.00------------------
.......................................................................................................................................................................................CATTTTCTTTTTTTTAACCG...............................................204.000.00-4.00-------------------
................ATGGCTACAGGAAGTATTTTAATCAAATTG............................................................................................................................................................................................................3014.004.00------4.00--------------
..........................................................................ATATTTATTTATTTATTTATTCTTG.......................................................................................................................................................253.000.003.00--------------------
.................................................................................................................................................................................TCTTTTCATTTTCTTTTTTTTTTTG................................................253.000.001.00-2.00------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTCTTG..............................................................................................................................................343.000.00-3.00-------------------
........................................................................ATATATTTATTTATTTATTTATTTATCTTG....................................................................................................................................................303.000.002.001.00-------------------
............................................................................ATTTATTTATTTATTTATTTATTTATTTATCAG.............................................................................................................................................333.000.001.00--1.00-1.00---------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTATG...............................................................................................................................................333.000.002.001.00-------------------
..................................................................ATATATATATATTTATTTATTTATTTATTTCTAG......................................................................................................................................................343.000.003.00--------------------
........................................................................ATATATTTATTTATTTATTTATCTTG........................................................................................................................................................263.000.00-3.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTCAG.......................................................................................................................................................253.000.001.00-1.001.00-----------------
..............................................................................TTATTTATTTATTTATTTATTTATCATG................................................................................................................................................282.000.002.00--------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTACAAG.................................................................................................................................................312.000.002.00--------------------
..........................................................................ATATTTATTTATTTATTTATCTTG........................................................................................................................................................242.000.002.00--------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTACTTG.............................................................................................................................................352.000.002.00--------------------
......................................................................ATATATATTTATTTATTTATTTATTTATTTTTTG..................................................................................................................................................342.000.00-1.00-1.00-----------------
......................................................................ATATATATTTATTTATTTATTTATTTCAAG......................................................................................................................................................302.000.001.001.00-------------------
........................................................................ATATATTTATTTATTTATTTATTTATTTTAAG..................................................................................................................................................322.000.001.00-1.00------------------
............................................................................ATTTATTTATTTATTTATTTATTTATCTCG................................................................................................................................................302.000.00---2.00-----------------
............................................................................ATTTATTTATTTATTTATTTATTTATCTGC................................................................................................................................................302.000.00-------2.00-------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTACTG..............................................................................................................................................342.000.00--2.00------------------
.........................................................................TATATTTATTTATTTATTTATTTATTTAAG...................................................................................................................................................302.000.001.001.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTATCG......................................................................................................................................................262.000.001.00--1.00-----------------
.............................................................................TTTATTTATTTATTTATTTATTTATTTATCTCG............................................................................................................................................332.000.002.00--------------------
..............................................................................TTATTTATTTATTTATTTATTTATCTCG................................................................................................................................................282.000.002.00--------------------
.......................................................................TATATATTTATTTATTTATCTTG............................................................................................................................................................232.000.002.00--------------------
...........................................................................TATTTATTTATTTATTTATTTATTTATCTGC................................................................................................................................................312.000.00----2.00----------------
......................................................................ATATATATTTATTTATTTATTTATTTCTAG......................................................................................................................................................302.000.002.00--------------------
.............................................................................TTTATTTATTTATTTATTTATTTATTTATCCG.............................................................................................................................................322.000.00--2.00------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTCG................................................................................................................................................322.000.002.00--------------------
.............................................................................TTTATTTATTTATTTATTTATTTATCTGC................................................................................................................................................292.000.00----2.00----------------
............................................................................ATTTATTTATTTATTTATTTATTTATCGGT................................................................................................................................................302.000.00----2.00----------------
..........................................................................ATATTTATTTATTTATTTATTTATTTCAG...................................................................................................................................................292.000.001.001.00-------------------
...................................................................................................................................................................................TTTTCATTTTCTTTTTTTTACAAT...............................................242.000.00---2.00-----------------
........................................................................ATATATTTATTTATTTATTTAACAG.........................................................................................................................................................251.000.00---1.00-----------------
..........................................................................ATATTTATTTATTTATTTATTTATCTAG....................................................................................................................................................281.000.00-1.00-------------------
.................................................................................................................................................................................TCTTTTCATTTTCTTTTTTTTTG..................................................231.000.001.00--------------------
........................................................................ATATATTTATTTATTTATTCTG............................................................................................................................................................221.000.00--1.00------------------
........................................AAATTGTAGGGTAGGTATATATAT..........................................................................................................................................................................................2411.001.00-------------1.00-------
..........................................................................ATATTTATTTATTTATTTATTTATTTAAAAG.................................................................................................................................................311.000.00--1.00------------------
.................................................GGTAGGTATATATATACATG.....................................................................................................................................................................................201.000.00----------1.00----------
......................................................................ATATATATTTATTTATTTATTTATTTATCG......................................................................................................................................................301.000.00--1.00------------------
.......................................................................TATATATTTATTTATTTATTTATTTCG........................................................................................................................................................271.000.001.00--------------------
...............................................................TATATATATATATATTTATTTCAAG..................................................................................................................................................................251.000.00-1.00-------------------
..........................................................................ATATTTATTTATTTATTTATCAAA........................................................................................................................................................241.000.001.00--------------------
....................................................................ATATATATATTTATTTATTTATTTATTTCTAG......................................................................................................................................................321.000.001.00--------------------
........................................................................................................................................................................................ATTTTCTTTTTTTTAACG................................................181.000.001.00--------------------
...............................ATTTTAATCAAATTGTAGG........................................................................................................................................................................................................1911.001.00-------------------1.00-
.......................................................................TATATATTTATTTATTTATTTATTTATTTTAAG..................................................................................................................................................331.000.00--1.00------------------
..................................TTAATCAAATTGTAGGCT......................................................................................................................................................................................................181.000.00-----------1.00---------
..........................................................................ATATTTATTTATTTATTTATTTATTTACA...................................................................................................................................................291.000.00--1.00------------------
.........................................................................................................................................................................................TTTTCTTTTTTTTAATCCAG.............................................201.000.00--1.00------------------
........................................................................................................................................................................................ATTTTCTTTTTTTTAACACG..............................................201.000.00--1.00------------------
......................................................................................................................................................................................TCATTTTCTTTTTTTTAATCTCTG............................................241.000.00-1.00-------------------
.........................................................................TATATTTATTTATTTATTTATCTTG........................................................................................................................................................251.000.001.00--------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTCTTG...............................................................................................................................................331.000.001.00--------------------
...........................AAGTATTTTAATCAAATTGTAGG........................................................................................................................................................................................................2311.001.00------------1.00--------
..........................................................................ATATTTATTTATTTATTTATTTATTTAGG...................................................................................................................................................291.000.00--1.00------------------
..........................................................................ATATTTATTTATTTATTTATTTCTAG......................................................................................................................................................261.000.00-1.00-------------------
...................................................................................................................................................................................TTTTCATTTTCTTTTTTTTAC..................................................211.000.00----1.00----------------
.......................................................................TATATATTTATTTATTTATTTATCTT.........................................................................................................................................................261.000.00---1.00-----------------
..........................................................................ATATTTATTTATTTATTTATTTATTTAACAG.................................................................................................................................................311.000.00---1.00-----------------
......................................................................................................................................................................................TCATTTTCTTTTTTTTAATCTTA.............................................231.000.00--1.00------------------
.........................................................................TATATTTATTTATTTATTTATTTATCTTG....................................................................................................................................................291.000.00-1.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTCTAA......................................................................................................................................................261.000.00-1.00-------------------
........AACTTTAGATGGCTACAGGAAGTACT........................................................................................................................................................................................................................261.000.00-------1.00-------------
.......................CAGGAAGTATTTTAATCAAATTGTA..........................................................................................................................................................................................................2511.001.00----------------1.00----
.....TGAAACTTTAGATGGCTACAGGAAGTATTTTA.....................................................................................................................................................................................................................3211.001.00--------------------1.00
...........................................................................................................................................................................................TTCTTTTTTTTAATCCTATAG..........................................211.000.001.00--------------------
..................................................................ATATATATATATTTATTTATTTATTTATTTCAAG......................................................................................................................................................341.000.00---1.00-----------------
........................................................................................................................................................................................ATTTTCTTTTTTTTAATCCAAG............................................221.000.001.00--------------------
..................................................................ATATATATATATTTATTTATTTATTTATTCTG........................................................................................................................................................321.000.00-1.00-------------------
........................................................................ATATATTTATTTATTTATCTTG............................................................................................................................................................221.000.001.00--------------------
..................................................................................................................................TAGAGTTGTGAATGTTGGAAAAATAAA.............................................................................................2711.001.00------------------1.00--
.....................................................................TATATATATTTATTTATTTCTTG..............................................................................................................................................................231.000.001.00--------------------
......................................................................ATATATATTTATTTATTTATTTATTTATTTCAAG..................................................................................................................................................341.000.00-1.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTACTTG.................................................................................................................................................311.000.00-1.00-------------------
...........................................................TATATATATATATATATATTTATTTATTTCTAG..............................................................................................................................................................331.000.00--1.00------------------
.........................................................................TATATTTATTTATTTATTTATTTATTTCAG...................................................................................................................................................301.000.00---1.00-----------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATCAAT................................................................................................................................................321.000.00--1.00------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTCTCG...............................................................................................................................................331.000.00-1.00-------------------
...................................................................TATATATATATTTATTTATTTATTTATTTCTAA......................................................................................................................................................331.000.001.00--------------------
........................................................................................................................................................................................ATTTTCTTTTTTTTAACCCG..............................................201.000.001.00--------------------
.........................................................................................................................................................................................TTTTCTTTTTTTTAATCCAAAG...........................................221.000.00-1.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATGTG.................................................................................................................................................311.000.00--1.00------------------
........................................................................ATATATTTATTTATTTATTTATTTATTTCGAG..................................................................................................................................................321.000.00----1.00----------------
............................................................................ATTTATTTATTTATTTATTTATTTATTTATCCTG............................................................................................................................................341.000.001.00--------------------
....................................................................ATATATATATTTATTTATTTATTTATTTATTCTG....................................................................................................................................................341.000.001.00--------------------
..........................................................................ATATTTATTTATTTATTTATTTCTT.......................................................................................................................................................251.000.001.00--------------------
........................................................................ATATATTTATTTATTTATTTATTTATGTTG....................................................................................................................................................301.000.001.00--------------------
..............................................................................................................................................................................AATTCTTTTCATTTTCTTTCA.......................................................211.000.00-----1.00---------------
...............................................................TATATATATATATATTTATTTATTTACTG..............................................................................................................................................................291.000.001.00--------------------
..................................................................................................................................................................................CTTTTCATTTTCTTTTTTTGTCA.................................................231.000.00-----1.00---------------
...........................................................TATATATATATATATATATTTATTTATTTCCG...............................................................................................................................................................321.000.001.00--------------------
.........................................................................TATATTTATTTATTTATTTAGGT..........................................................................................................................................................231.000.00----1.00----------------
.............................................................................TTTATTTATTTATTTATTTATTTATTTATTGACC...........................................................................................................................................341.000.00----1.00----------------
........................................................................ATATATTTATTTATTTATTTATTTATTTCG....................................................................................................................................................301.000.00-1.00-------------------
.......AAACTTTAGATGGCTACAGGAAGTATT........................................................................................................................................................................................................................2711.001.00-------1.00-------------
........................................................................ATATATTTATTTATTTATTTATTTATTCA.....................................................................................................................................................291.000.00-1.00-------------------
...................................................................................................................................................................................TTTTCATTTTCTTTTTTTTATTAG...............................................241.000.00-----1.00---------------
........................................................................ATATATTTATTTATTTATTTATTTATTTTCAG..................................................................................................................................................321.000.00---1.00-----------------
.....................................................................................................................................................................................................................ATTTGTTTTTGATTTAGG...................181.000.00----1.00----------------
.....................................................................TATATATATTTATTTATTTATTTATTTCAAG......................................................................................................................................................311.000.001.00--------------------
.......................................................................TATATATTTATTTATTTATTTATTTAACAG.....................................................................................................................................................301.000.00-1.00-------------------
........................AGGAAGTATTTTAATCAAATTGTAG.........................................................................................................................................................................................................2511.001.00---------1.00-----------
......................................................................ATATATATTTATTTATTTATTTATTTCAA.......................................................................................................................................................291.000.00--1.00------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTATTTGTG...............................................................................................................................................331.000.00---1.00-----------------
...................................................................TATATATATATTTATTTATTTATTTATTTCAG.......................................................................................................................................................321.000.00---1.00-----------------
.........................................................................TATATTTATTTATTTATTTATTTATTTCTAG..................................................................................................................................................311.000.001.00--------------------
.................................................................................TTTATTTATTTATTTATTTATTTATTGCGAG..........................................................................................................................................311.000.00-----1.00---------------
......................................................................ATATATATTTATTTATTTATTTATTTCAG.......................................................................................................................................................291.000.00--1.00------------------
............................................................................ATTTATTTATTTATTTATTTATTTATTTATCCG.............................................................................................................................................331.000.00--1.00------------------
...CATGAAACTTTAGATGGCT....................................................................................................................................................................................................................................1911.001.00---------------1.00-----
......................................................................ATATATATTTATTTATTTCTTG..............................................................................................................................................................221.000.00-1.00-------------------
...................................................TAGGTATATATATATACTTG...................................................................................................................................................................................201.000.00--------------1.00------
..........................................................................ATATTTATTTATTTATTTATTTATTCACG...................................................................................................................................................291.000.00-1.00-------------------
.................................................................................................................................................................................TCTTTTCATTTTCTTTTTTTATTT.................................................241.000.00-----1.00---------------
.........................................................................TATATTTATTTATTTATTTATTTATGG......................................................................................................................................................271.000.00---1.00-----------------
......................................................................ATATATATTTATTTATTTATTTATTTATTTCG....................................................................................................................................................321.000.00-1.00-------------------
...................................................................................................................................................................................................................AGATTTGTTTTTGATTTTCTAACGAT.............261.000.00----1.00----------------
.................................................................................................................................................................................TCTTTTCATTTTCTTTTTTTTATTT................................................251.000.001.00--------------------
........................................................................ATATATTTATTTATTTATTTATTTATTCT.....................................................................................................................................................291.000.001.00--------------------
...............................................................................................................................................................................ATTCTTTTCATTTTCTTTCCC......................................................211.000.00----1.00----------------
..........................................................................ATATTTATTTATTTATTTATCTAG........................................................................................................................................................241.000.001.00--------------------
...........................................................TATATATATATATATATATTTATTTATTTATG...............................................................................................................................................................321.000.00--1.00------------------
.........................................................................TATATTTATTTATTTATTTAATAG.........................................................................................................................................................241.000.00-1.00-------------------
........................................................................ATATATTTATTTATTTATTTATTCG.........................................................................................................................................................251.000.001.00--------------------
...................................................................................................................................................................................TTTTCATTTTCTTTTTTTTACA.................................................221.000.00--1.00------------------
....................................................................ATATATATATTTATTTATTTATTTATTTACTG......................................................................................................................................................321.000.00-1.00-------------------
..................................................................................................................................................................................CTTTTCATTTTCTTTTTTTTCTTT................................................241.000.00-1.00-------------------
............................................................................ATTTATTTATTTATTTATTTATTTATTTATCCC.............................................................................................................................................331.000.001.00--------------------
.......................................................................TATATATTTATTTATTTATTTATTTCAG.......................................................................................................................................................281.000.00--1.00------------------
........................................................................ATATATTTATTTATTTATTTATTTCAA.......................................................................................................................................................271.000.00-1.00-------------------
........................................................................ATATATTTATTTATTTATTTATTTACG.......................................................................................................................................................271.000.00-1.00-------------------
..........................................................................ATATTTATTTATTTATTTATTTATTTCAAG..................................................................................................................................................301.000.00-1.00-------------------

Antisense strand
CAGCATGAAACTTTAGATGGCTACAGGAAGTATTTTAATCAAATTGTAGGGTAGGTATATATATATATATATATATATTTATTTATTTATTTATTTATTTATTTATTGAAATTTATACTCTTTCCATACATAGAGTTGTGAATGTTGGAAAAATAAATCAGGTTTTCCTTAGGAAATTCTTTTCATTTTCTTTTTTTTAATCCTTAAGACAAGATTTGTTTTTGATTTTCTAATGATTTAAAAGGAACAC
................................................................................................((((((((.((.(((((((((((((..........))))).)))))).)).)).)))))))).(((........((((((..........)))))).........)))..............................................
.....................................................................70........................................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................................................TTTTTTTAATCCTTAGAAC........................................ 192.000.00--------2.00------------
.....................................................................................................TTTATTGAAATTTATCCT................................................................................................................................... 182.000.001.00----1.00---------------
..................................................GTAGGTATATATATAGTTT..................................................................................................................................................................................... 191.000.00-----------------1.00---