ID: uc010exg.1_intron_6_0_chr2_10583963_r
GENE: ODC1(5)
chr2:10583913-10584270-


(1)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(4)
BREAST 		(21)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(5)
HELA 		(1)
LIVER 		(1)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GATAGTGAAGTTGAGTTGATGAAAGTTGCCAGAGCACATCCCAAAGCAAAGTGAGTTATTCCCCCATCTGAGGGCAAGATCGGGAGCATAAGATATGTGGATTCTTATCAAACAAACTTAAATTTCTGATTATTATATTTCTATACTTTAGTAGAAAGTAGTTGAAACCCCCATTGAGTCATGAAGCCTGGGACTCAAACTACAGAATATATCAGCGACAGTATTTAGAACAGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAGGTTGGTTTTGCGGATTGCCACTGATGATTCCAAAGCAGTCTGTCGTCTCA
...............................................................................................(((((......................((((.((((((....(((((((......)))))))))))))))))......(((((((...........))))))).)))))..........................................................................................................................................................
..........................................................................................91.....................................................................................................................210..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189785GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
....................................................................................................................................................................................................................................AACAGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................80115.0015.00-14.00-------------------------------------1.00--------------
.....................................................................................................................................................................................................................................ACAGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................79115.0015.00-2.0013.00---------------------------------------------------
...AGTGAAGTTGAGTTGATG.................................................................................................................................................................................................................................................................................................................................................18112.0012.0012.00-----------------------------------------------------
.....TGAAGTTGAGTTGATGA................................................................................................................................................................................................................................................................................................................................................17111.0011.0011.00-----------------------------------------------------
................................................................................................................................................................................................................................................TTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................68110.0010.00-10.00----------------------------------------------------
...............................................................................................TGTGGATTCTTATCAAACA....................................................................................................................................................................................................................................................1919.009.009.00-----------------------------------------------------
......................................................................................................................................................................................................................................CAGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................7818.008.00--8.00---------------------------------------------------
.........................................................................GCAAGATCGGGAGCATAAGAT........................................................................................................................................................................................................................................................................2117.007.00-----7.00------------------------------------------------
..TAGTGAAGTTGAGTTGATG.................................................................................................................................................................................................................................................................................................................................................1914.004.00------4.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGTTTTGCGGATTGCCACTGATGATT.....................2614.004.00---4.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................GTTGGTTTTGCGGATTGC................................1814.004.00---4.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGATGATT.....................2313.003.00----3.00-------------------------------------------------
...........................GCCAGAGCACATCCCAAAGC.......................................................................................................................................................................................................................................................................................................................2013.003.00---3.00--------------------------------------------------
............................................................................................................................................................................................................................................................................................................................TGCGGATTGCCACTGATG........................1812.002.00----2.00-------------------------------------------------
............................CCAGAGCACATCCCAAAGC.......................................................................................................................................................................................................................................................................................................................1912.002.00-----------2.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................CCAAAGCAGTCTGTCGTCTC.2012.002.00--------1.00-----------------------1.00---------------------
....GTGAAGTTGAGTTGATG.................................................................................................................................................................................................................................................................................................................................................1712.002.00-----------------2.00------------------------------------
.......................................................................................................................................................................................................................................AGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................7712.002.00-2.00----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TGGTTTTGCGGATTGCCACTGAT.........................2312.002.00----1.00----1.00--------------------------------------------
.......AAGTTGAGTTGATGAAAGT............................................................................................................................................................................................................................................................................................................................................1912.002.00---1.00-----------------------------------------------1.00--
....................................................................................................................................................................................................................................................................................TGAGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................3212.002.00----------1.00----------------1.00--------------------------
..............................................................................................................................................................................................................................................................................................................................................ATTCCAAAGCAGTCTGTCGTCTC.2312.002.00----------------2.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................................TGATTCCAAAGCAGTCTGTCGT....2212.002.00---2.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................AGACATTTGCTGCACTTTCCTTGCTTGTAG..................................................3012.002.00-----------------------1.00----------------------------1.00-
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGATG........................2012.002.00----2.00-------------------------------------------------
..................ATGAAAGTTGCCAGAGCACA................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------1.00-------------
............................................................................................................................................................................................................................................................................................................................TGCGGATTGCCACTGATGA.......................1911.001.00-------------1.00----------------------------------------
.......AAGTTGAGTTGATGAAAGTTGCCAGAGTTTT................................................................................................................................................................................................................................................................................................................................311.000.00------------------------------------------1.00-----------
.................................................................................................................................................................................................................................................................................................................................................CCAAAGCAGTCTGTCGGCAA.201.000.00---------------------------------1.00--------------------
.............................................................................................................................................................................................................................................................................................................................GCGGATTGCCACTGATGA.......................1811.001.00----1.00-------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................CCAAAGCAGTCTGTCGTCT..1911.001.00--------1.00---------------------------------------------
.....................................................................................................................................................................................TGAAGCCTGGGACTCAAACTACAGA........................................................................................................................................................2511.001.00-----------------------------------------------------1.00
.............................................................................................................................................................................................................................................................................................................................GCGGATTGCCACTGATGATT.....................2011.001.00-------------------------1.00----------------------------
..................................................................................................................................................................................TCATGAAGCCTGGGACTC..................................................................................................................................................................1811.001.00-----1.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGTTTTGCGGATTGCCACT............................1911.001.00-------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGTTTTGCGGATTGCC...............................1611.001.00-------------1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................CCAAAGCAGTCTGTCGTC...1811.001.00--------------------------------------1.00---------------
.............................................................................................................................................................................................................................................................................................................................GCGGATTGCCACTGAT.........................1611.001.00-------1.00----------------------------------------------
.......AAGTTGAGTTGATGAAAGTTGCCAGAGCACATC..............................................................................................................................................................................................................................................................................................................................3311.001.00--------------------1.00---------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGAAGAT......................221.000.00------------1.00-----------------------------------------
........................GTTGCCAGAGCACATCCCAAAGCAAA....................................................................................................................................................................................................................................................................................................................2611.001.00--------------------------------------------1.00---------
.....................................................................................................................................................................................................................................................................................GAGACATTTGCTGCACTTTCCTTGCTTGGAG..................................................311.000.00----------1.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TTCCAAAGCAGTCTGTCGTCT..2111.001.00----1.00-------------------------------------------------
.ATAGTGAAGTTGAGTTGATGAAAGTTG..........................................................................................................................................................................................................................................................................................................................................2711.001.00------------------------------------1.00-----------------
...AGTGAAGTTGAGTTGATGA................................................................................................................................................................................................................................................................................................................................................1911.001.00--------1.00---------------------------------------------
...................................................................................................................................................................................................................................GAACAGGATTGTTTTTATTTTAATTGTGGC.....................................................................................................3011.001.00---------1.00--------------------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGACGAT......................221.000.00------------1.00-----------------------------------------
...................................................................................................................................................................................................................................GAACAGGATTGTTTTGGC.................................................................................................................181.000.00----------------------------------1.00-------------------
...................................................................................................................................................................................................................TCAGCGACAGTATTTAGAACAGGATTG........................................................................................................................2711.001.00----1.00-------------------------------------------------
.............................................GCAAAGTGAGTTATTCCCCCATCTGAG..............................................................................................................................................................................................................................................................................................2711.001.00-------------------------------------------------1.00----
........................................................................................................................................................................................................................GACAGTATTTAGAACTCTG...........................................................................................................................191.000.00------------------1.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................GGTTTTGCGGATTGCCACTGA..........................2111.001.00--------------------------1.00---------------------------
..........................................................................................................................................................................................................................................................................................................................................GATGATTCCAAAGCAGTCTGTCG.....2311.001.00------------------------------------------------1.00-----
....................................................................................................................................................................................................................CAGCGACAGTATTTAGAACAGGATTG........................................................................................................................2611.001.00-----------------------------1.00------------------------
..............................................................................................................................................................................................................................................................................................................................................ATTCCAAAGCAGTCTGGCGC....201.000.00---------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................TTCCAAAGCAGTCTGTCG.....1811.001.00-------1.00----------------------------------------------
.....TGAAGTTGAGTTGATGC................................................................................................................................................................................................................................................................................................................................................171.000.001.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................GATTCCAAAGCAGTCTGTCGT....2111.001.00-----------------------------------------1.00------------
.........................................................................................................................................................................................................................................................................................................................TTTTGCGGATTGCCACTGATG........................2111.001.00--------------1.00---------------------------------------
........AGTTGAGTTGATGAAAGTTGC.........................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------1.00-------
............................................................................................................................................................................................................................................................................................................................................TGATTCCAAAGCAGTCTGGCGT....221.000.00----------1.00-------------------------------------------
........................................CCAAAGCAAAGTGAGGC.............................................................................................................................................................................................................................................................................................................171.000.00------------------------1.00-----------------------------
............................................................CCCCCATCTGAGGGCGG.........................................................................................................................................................................................................................................................................................171.000.00-----------------------------------------------1.00------
.............................................................CCCCATCTGAGGGCACCA.......................................................................................................................................................................................................................................................................................181.000.00---------------------1.00--------------------------------
....................................................................................................................................................................................................................................................................................................................GTTGGTTTTGCGGATTGCC...............................1911.001.00---1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGTTTTGCGGATTGCCACTGATGAT......................2511.001.00-------------------1.00----------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGACGAA......................221.000.00------------1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................TTTGCGGATTGCCACTGATT........................201.000.00-------1.00----------------------------------------------
..................................................................TCTGAGGGCAAGATCGGGAGCATAAG..........................................................................................................................................................................................................................................................................2611.001.00------------------------------1.00-----------------------
............................................................................................................................................................................................................................................................................................................................TGCGGATTGCCACTG...........................1511.001.00--------------------------------------------------1.00---
............................................................................................................................................................................................................................................................................................................................................TGATTCCAAAGCAGTCTGTCG.....2111.001.00----------------------------1.00-------------------------
...........................GCCAGAGCACATCCCAAAGCA......................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------1.00------------------
......................AAGTTGCCAGAGCACATCCCAAAGCAAA....................................................................................................................................................................................................................................................................................................................2811.001.00-------------------------------------------1.00----------
................................................................................................................................................................................................................................................................................................................................................TCCAAAGCAGTCTGTCGT....1811.001.00--------1.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................................................TGATTCCAAAGCAGTCTGTCGTC...2311.001.00-------------------------------------1.00----------------
.......................................................................................................................................................................................................................................................................................................................................ACTGATGATTCCAAAGCA.............1811.001.00----------------------1.00-------------------------------
.......................AGTTGCCAGAGCACATCT.............................................................................................................................................................................................................................................................................................................................181.000.00-----------1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................TGGTTTTGCGGATTGCCACTGATG........................2411.001.00----1.00-------------------------------------------------
..............................................................................................................................................................................................................................ATTTAGAACAGGATTGT.......................................................................................................................1720.500.50---------0.50--------------------------------------------
....................GAAAGTTGCCAGAGCAC.................................................................................................................................................................................................................................................................................................................................1730.330.33-------------0.33----------------------------------------

Antisense strand
GATAGTGAAGTTGAGTTGATGAAAGTTGCCAGAGCACATCCCAAAGCAAAGTGAGTTATTCCCCCATCTGAGGGCAAGATCGGGAGCATAAGATATGTGGATTCTTATCAAACAAACTTAAATTTCTGATTATTATATTTCTATACTTTAGTAGAAAGTAGTTGAAACCCCCATTGAGTCATGAAGCCTGGGACTCAAACTACAGAATATATCAGCGACAGTATTTAGAACAGGATTGTTTTTATTTTAATTGTGGCTATAAGTGAACATCTATCATGAGACATTTGCTGCACTTTCCTTGCTTGTAGGTTGGTTTTGCGGATTGCCACTGATGATTCCAAAGCAGTCTGTCGTCTCA
...............................................................................................(((((......................((((.((((((....(((((((......)))))))))))))))))......(((((((...........))))))).)))))..........................................................................................................................................................
..........................................................................................91.....................................................................................................................210..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189785GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
...................................................................................................................................................................................................................................................ATTTTAATTGTGGCTACGG................................................................................................ 191.000.00-------------------------------1.00----------------------
........................................................................................................................AATTTCTGATTATTATACG........................................................................................................................................................................................................................... 191.000.00---------------1.00--------------------------------------
.......AAGTTGAGTTGATGAATAG............................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------1.00--------------------------------------
.........................................................................................................................................................................................................................................................................................................CTTGCTTGTAGGTTGCC............................................ 171.000.00---------1.00--------------------------------------------