ID: uc010esr.1_intron_2_0_chr19_55558857_r.5p
GENE: RDH13(3)
chr19:55559497-55559746-


(2)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(4)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(2)
OTHER 		(30)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CAAGCTCGCCATCGTCCTCTTCACCAAGGAGCTGAGCCGGCGGCTGCAAGGTACGGGGGCGCTAGGCTCGGCCTCCCTCTTGCTTTACTCTGAGCCTAGAGCGGCCTTTCCATGATCCTAGGCTGATGGGAGGCCAAACGGTGGATCCAGAACAGAGTCAGCAAAAGTAGAGCATGTGGACCACGCTGCCCGCTTCTGGTGCCTGAAGCAGACATCACTAATCGATCGTTCTTCTGAGGATTGTCTGTTC
................................................................................(((((((((((((..((.....((((.((((((............))))))))))....((.....)).....))..))))....)))))))))............................................................................
...............................................................................80............................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTG........................................................................28138.0038.0010.004.001.00--3.00---2.00-1.001.002.001.00-----1.001.002.00---1.00-1.00---1.001.00----1.00--1.00--------1.00----------1.00-----1.00---
..................................................GTACGGGGGCGCTAGGCTCGGCCTCCCTCTTGCTTTACTCTGAGCCTAGAGCGGCCTTTCCATGATCCTAG.................................................................................................................................71115.0015.00--7.00-8.00------------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGT.......................................................................29114.0038.00-----------1.001.00-1.001.001.00--2.001.00---2.00-----------1.00-----------1.00--------------1.00-1.00-----
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGG.......................................................................29112.0012.003.00-----1.00--------1.00--1.00----2.00---------------------1.00-----------1.00-1.00--1.00--------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATG..........................................................................2619.009.004.00--3.00-------------2.00-----------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGA......................................................................3018.008.007.00---------------------------------------------------1.00------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAG................................................................................2017.007.00-6.00--------------------------------------------------------1.00------------
..................................................GTACGGGGGCGCTAGGCTCGGCCTCCCTCTTGCTTTACTCTGAGCCTAGAGCGGCCTTTCCATGATCCTAGTT...............................................................................................................................7315.0015.00--4.00----------------------------------------------------1.00---------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGC.............................................................................2315.005.00-5.00---------------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGT.........................................................................2715.005.00-2.00----1.00-1.00---------1.00----------------------------------------------------
....................................................................................TTACTCTGAGCCTAGAGCGGCAATC.............................................................................................................................................254.000.00-------4.00---------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGAAA....................................................................3213.008.001.00-----1.00--------------------------------------------1.00-------------------
............................................................................................................................................................................................................................ATCGATCGTTCTTCTGAGGATTG.......2312.002.00-2.00---------------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGA...............................................................................2112.002.00-----2.00-----------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGACC....................................................................3212.002.00----------------------------------1.00-------------------1.00----------------
.........................................................................................................................................................AGAGTCAGCAAAAGTAGAGCATG..........................................................................2311.001.00------1.00----------------------------------------------------------------
..........................AGGAGCTGAGCCGGCGGCTGCAAG........................................................................................................................................................................................................2411.001.00----------1.00------------------------------------------------------------
............................................................................................................................................GTGGATCCAGAACAGAGTCAGCA.......................................................................................2311.001.00------------------------------------------------------------1.00----------
................................................................................................................................................................GCAAAAGTAGAGCATGTGGACCAC..................................................................2411.001.00-----------------------------------------------------1.00-----------------
.................................................................................................................................................TCCAGAACAGAGTCAGCAAAAG...................................................................................2211.001.00-1.00---------------------------------------------------------------------
............................................................................................................................................GTGGATCCAGAACAGAGTCAGCAAAAGT..................................................................................2811.001.00--------1.00--------------------------------------------------------------
.............................................................................................................................................................TCAGCAAAAGTAGAGCATGTG........................................................................2111.001.00-1.00---------------------------------------------------------------------
................................................................................................................................................................GCAAAAGTAGAGCATGTGT.......................................................................191.000.00--------------------------------------------------------1.00--------------
.....................CACCAAGGAGCTGAGCCGGC.................................................................................................................................................................................................................2011.001.00----------------1.00------------------------------------------------------
.................................................................................................................................................TCCAGAACAGAGTCAGCAAAAGTAGAG..............................................................................2711.001.00--------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................TAATCGATCGTTCTTCTGAGGATTG.......2511.001.00---1.00-------------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGAG.....................................................................3111.008.001.00----------------------------------------------------------------------
....................................................................................................................................................AGAACAGAGTCAGCAAAAGTAGAGCATG..........................................................................2811.001.00-------------------------------------1.00---------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAG..............................................................................2211.001.00------------------------------1.00----------------------------------------
...................................GCCGGCGGCTGCAAGTA......................................................................................................................................................................................................171.000.00---------------------------1.00-------------------------------------------
...............................................................................................................................................GATCCAGAACAGAGTCAGCAAAAGTAGA...............................................................................2811.001.00---1.00-------------------------------------------------------------------
..............................................................................................................................................................CAGCAAAAGTAGAGCATGTGGACCACGC................................................................2811.001.00---1.00-------------------------------------------------------------------
...................TTCACCAAGGAGCTGAGCCGGCGGCTGC...........................................................................................................................................................................................................2811.001.00---------1.00-------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCAT...........................................................................2511.001.00-1.00---------------------------------------------------------------------
.......................................................................................................................................AAACGGTGGATCCAGAACAGAGTCAGCAAAA....................................................................................3111.001.00-----------------------------------1.00-----------------------------------
.........................AAGGAGCTGAGCCGGCGGCTGCAAG........................................................................................................................................................................................................2511.001.00----------1.00------------------------------------------------------------
.................................................................................................................................................................CAAAAGTAGAGCATGTGG.......................................................................1811.001.00-----------------------------1.00-----------------------------------------
...............................................................................................................................................................AGCAAAAGTAGAGCATGTG........................................................................1911.001.00---------------------------------------1.00-------------------------------
..................................................................................................................................................CCAGAACAGAGTCAGCAAAA....................................................................................2011.001.00-------------------------1.00---------------------------------------------
.....................................................................................................................................................GAACAGAGTCAGCAAAAG...................................................................................1811.001.00----------------------------------------------------------------1.00------
...............................................................................................................................................................AGCAAAAGTAGAGCATGTGT.......................................................................2011.001.00-------------------------1.00---------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGACCACGCT...............................................................3711.001.001.00----------------------------------------------------------------------
.............................................................................................GCCTAGAGCGGCCTTTCCATGATCCT...................................................................................................................................2611.001.00-------------------------------1.00---------------------------------------
..........................AGGAGCTGAGCCGGCGGCTTAA..........................................................................................................................................................................................................221.000.00------------------------------------------1.00----------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGAC.....................................................................3111.001.00------1.00----------------------------------------------------------------
......................................................................................................................................................AACAGAGTCAGCAAAAGTAGAGCATGTGGACCACG.................................................................3511.001.00------------------------------------------------------------------1.00----
.......................................................................................................................................................................................CGCTGCCCGCTTCTGGTGC................................................1911.001.00-------------------------------------------1.00---------------------------
..............................GCTGAGCCGGCGGCTGC...........................................................................................................................................................................................................1720.500.50---------------------------------------------------------------------0.50-
...................................................................................................................................................................AAAGTAGAGCATGTGG.......................................................................1630.330.33----------------------------------------------------------------------0.33

Antisense strand
CAAGCTCGCCATCGTCCTCTTCACCAAGGAGCTGAGCCGGCGGCTGCAAGGTACGGGGGCGCTAGGCTCGGCCTCCCTCTTGCTTTACTCTGAGCCTAGAGCGGCCTTTCCATGATCCTAGGCTGATGGGAGGCCAAACGGTGGATCCAGAACAGAGTCAGCAAAAGTAGAGCATGTGGACCACGCTGCCCGCTTCTGGTGCCTGAAGCAGACATCACTAATCGATCGTTCTTCTGAGGATTGTCTGTTC
................................................................................(((((((((((((..((.....((((.((((((............))))))))))....((.....)).....))..))))....)))))))))............................................................................
...............................................................................80............................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR040023(GSM532908)
G575T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................TCAGAGTAAAGCAAGAGGGAGGC............................................................................................................................................................. 2312.002.00---------------------1.00------------------1.00------------------------------
......TGGTGAAGAGGACGATGGCG................................................................................................................................................................................................................................ 2011.001.00-------------------------------------------------1.00---------------------
...........................................................................CCTCTTGCTTTACTCTGAGCCTAGAC..................................................................................................................................................... 261.000.00---1.00-------------------------------------------------------------------
.........................................................................................................CTTTCCATGATCCTAATTG.............................................................................................................................. 191.000.00-----------------------------------------------1.00-----------------------
..........................................................................TCTAGGCTCAGAGTAAAGCAAGAGGG...................................................................................................................................................... 2611.001.00---1.00-------------------------------------------------------------------
......................................................................GAGTAAAGCAAGAGGGAGGC................................................................................................................................................................ 2011.001.00----------1.00------------------------------------------------------------
........................................................................................................................................................................................GCTGCCCGCTTCTGGTGC................................................ 181.000.00----------------------------------------------1.00------------------------
............................................................................................................................................................................................CCCGCTTCTGGTGCCTGC............................................ 181.000.00--------------------------------------------1.00--------------------------
.............................................................................................................................................................................................................................CAGAAGAACGATCGA.............. 1520.500.50--------------------------------------------------------------------0.50--