ID: uc010eny.2_intron_12_0_chr19_50910673_f.5p
GENE: (13)
chr19:50910623-50910872+


(2)
AGO2.ip
(1)
B-CELL
(16)
CELL-LINE
(1)
CERVIX
(2)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
GAGGGCGGCGAGGACTACACGGGAGCCACTGTCATCGAGCCCCTCAAAGGGTGAGGCCCCAGGCTGGGTGCAGTTTTTACCTGTAATCTCTGGGAGGCTGAGGTGGGAGGATCACTTGAGCTCAGGAGTTTGAGACCAGCCAGGGCAACATAGCGAGGCCCCTGCTCCACAAAATTTTTTTATTTTTATTTATTTTTATTTTTATTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAG
...................................................................................(((.((((..((.(((.((((((.....)))))).))))).)))).))).....(((..((((...........))))..)))....................................................................................
..................................................................................83....................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR189782DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.......................................................................................................................................................................................TTTTATTTATTTTTATTTTTATTATAG........................................2722.000.0012.00-3.00-4.003.00---------------------
........................................................................................................................................................................................TTTATTTATTTTTATTTTTATTATAG........................................265.000.005.00--------------------------
..................................................................................................................................................................................................................TGAGACAGAGTCTCGCTCTGTCACCCAGCCGG........323.000.00-3.00-------------------------
...........................................................................................................................................................................................ATTTATTTTTATTTTTATTTTTTTCTT....................................273.000.00--1.00-1.001.00---------------------
.................................................................................................................................................................................TTTTATTTTTATTTATTTTTATTATAG..............................................273.000.001.00---2.00----------------------
...................................................................................................................................................ACATAGCGAGGCCCCGAA.....................................................................................182.000.00-------2.00-------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTATTTATAG.......................................302.000.00------2.00--------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTCGAG...........................................262.000.00-2.00-------------------------
...................................................................................................................................................................................TTATTTTTATTTATTTTTATTTTTATTTTTTTTG.....................................342.000.002.00--------------------------
.......................................................................................CTCTGGGAGGCTGAGGTG.................................................................................................................................................1802.002.00-------------1.00--------1.00----
.................................................................................................................................................................................TTTTATTTTTATTTATTTTTATTTTCTG.............................................282.000.002.00--------------------------
...............................................................................................................................................................................TTTTTTATTTTTATTTATTTTTAATCC................................................272.000.00-2.00-------------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTACG............................................252.000.00-----------2.00---------------
...........................................................................................................................................................................................ATTTATTTTTATTTTTATTATAG........................................232.000.00--1.00--1.00---------------------
..................................................GTGAGGCCCCAGGCTGGGTGCAGTT...............................................................................................................................................................................2512.002.00--------2.00------------------
..................................................................................................................................TGAGACCAGCCAGGGCAACGGTG.................................................................................................232.000.00---2.00-----------------------
........................................................................................TCTGGGAGGCTGAGGTGGGAGGATCCCA......................................................................................................................................281.000.00---1.00-----------------------
......................................................................................................................................................................................TTTTTATTTATTTTTATTTTGTTG............................................241.000.00--1.00------------------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTTTTAG...........................................................221.000.00-----1.00---------------------
........................................................................................................................................................................................TTTATTTATTTTTATTTTTATTTTAA........................................261.000.00----1.00----------------------
................................................................................................................................................................................TTTTTATTTTTATTTATTTTTCAAG.................................................251.000.00----1.00----------------------
..........AGGACTACACGGGAGCCA..............................................................................................................................................................................................................................1811.001.00------------1.00--------------
.........................................................................................................................................................................................TTATTTATTTTTATTTTTATTTTTTCTTG....................................291.000.00-----1.00---------------------
..........AGGACTACACGGGAGCCACTGTCA........................................................................................................................................................................................................................2411.001.00-------------------------1.00-
......................................................................................................................................................................................TTTTTATTTATTTTTATTTTCGAG............................................241.000.00---1.00-----------------------
..............................................................................................................................................................................TTTTTTTATTTTTATTTATTTTTAG...................................................251.000.00-----1.00---------------------
..........................................................................................................GAGGATCACTTGAGCTCAGCAGC.........................................................................................................................231.000.00--------------1.00------------
................................................................................................................................................................................................TTTTTATTTTTATTTTTTTGATCC..................................241.000.00-1.00-------------------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTTTAT............................................................211.000.00--1.00------------------------
...........................................................................................................AGGATCACTTGAGCTCAGGAG..........................................................................................................................2101.001.00---------------------1.00-----
............................................................................................................................................................................................TTTATTTTTATTTTTATTTTCTAC......................................241.000.00------1.00--------------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTTATTTTTAG.......................................................261.000.00-----1.00---------------------
...........................................................................................................................................CCAGGGCAACATAGCGAGAC...........................................................................................201.000.00-------------1.00-------------
......................................................................................................................AGCTCAGGAGTTTGAGACCAGCCAAGCA........................................................................................................281.000.00---1.00-----------------------
................................................................................................................................................................................TTTTTATTTTTATTTATTTTTATG..................................................241.000.001.00--------------------------
.........GAGGACTACACGGGAGCCAC.............................................................................................................................................................................................................................2011.001.00------------1.00--------------
.................................................................................................................ACTTGAGCTCAGGAGTTTGAGACCAGCCAGACA........................................................................................................331.000.00---1.00-----------------------
......................................................................................................................AGCTCAGGAGTTTGAGACCAGCCGAGC.........................................................................................................271.000.00-1.00-------------------------
....................................................................................................................................................................................TATTTTTATTTATTTTTATTTTTATTTTCTG.......................................311.000.00--1.00------------------------
......................................................................................................................................................................................................TTTTTATTTTTTTGAGACAGAGCG............................241.000.00---1.00-----------------------
.................................................................................................................................................................................TTTTATTTTTATTTATTTTTATTTTTC..............................................271.000.00-1.00-------------------------
...............................................................................................................................................................................................ATTTTTATTTTTATTTTTTTCTAG...................................241.000.00--1.00------------------------
............................................................................................................................................................................................TTTATTTTTATTTTTATTTTTTTGAGAAGG................................301.000.00-1.00-------------------------
.......................................................................................................................................................................................TTTTATTTATTTTTATTTTTATTTTTTATG.....................................301.000.001.00--------------------------
........................................................................................TCTGGGAGGCTGAGGTGGGAGGCCC.........................................................................................................................................251.000.00-1.00-------------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTATTTTTTTCT.....................................321.000.00----1.00----------------------
..............................................................................................................ATCACTTGAGCTCAGGAGTCGCC.....................................................................................................................231.000.00---1.00-----------------------
....................................................................................................................................AGACCAGCCAGGGCAACGATG.................................................................................................211.000.00-1.00-------------------------
....................................................................................................AGGTGGGAGGATCACTTGAGCTCAGGAGTCCG......................................................................................................................321.000.00---1.00-----------------------
..............................................................................................................................................................................TTTTTTTATTTTTATTTATTTTTATTTTAG..............................................301.000.00--1.00------------------------
................................CATCGAGCCCCTCAAAGG........................................................................................................................................................................................................1811.001.00-----------------------1.00---
..............................................................................................................................................................................TTTTTTTATTTTTATTTATCTT......................................................221.000.00------1.00--------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTATTTACAG.......................................301.000.00--1.00------------------------
...................................................................................................................................................................................TTATTTTTATTTATTTTTATTTTTATTTTCTG.......................................321.000.001.00--------------------------
.......................................................................................................................................................................................TTTTATTTATTTTTATTTTTATTTTATG.......................................281.000.001.00--------------------------
.........................................................................................................................................................................................TTATTTATTTTTATTTTTATTTTTTAATG....................................291.000.00----1.00----------------------
............................................................................................................................................................................AATTTTTTTATTTTTATTTATTCTTT....................................................261.000.00-1.00-------------------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTCTAG............................................................211.000.00--1.00------------------------
..............................................................................................................................................................................TTTTTTTATTTTTATTTATTCTAG....................................................241.000.00--1.00------------------------
.......................................................................................CTCTGGGAGGCTGAGGTGGG...............................................................................................................................................2001.001.00-------------------1.00-------
...............................................................................................................................................................................TTTTTTATTTTTATTTATTTTTATTTTAG..............................................291.000.00--1.00------------------------
...........................................................................................................................................................................................ATTTATTTTTATTTTTATTTTCAG.......................................241.000.00----1.00----------------------
.........................................................................................................................................................................................TTATTTATTTTTATTTTTATTTTTTTCCAG...................................301.000.00----1.00----------------------
......................................................................................................................................................................................................................ACAGAGTCTCGCTCTGTCACCCAGGGGAG.......291.000.00-1.00-------------------------
..........................................................................................................................................................................................TATTTATTTTTATTTTTATTATAG........................................241.000.001.00--------------------------
..............................................................................................................................................................................TTTTTTTATTTTTATTTATTTTTTTAC.................................................271.000.00-1.00-------------------------
.........................................................................................CTGGGAGGCTGAGGTGGGAGGACGGC.......................................................................................................................................261.000.00-1.00-------------------------
..............................................................................................................ATCACTTGAGCTCAGGAGTCATA.....................................................................................................................231.000.00--------------------------1.00
..............................................................................................................................................................................TTTTTTTATTTTTATTTATACA......................................................221.000.00-----1.00---------------------
.........................................................................................................................TCAGGAGTTTGAGACCAGCCGCCC.........................................................................................................241.000.00-1.00-------------------------
...................................................................................................................................................................................TTATTTTTATTTATTTTTATTTTTCTTG...........................................281.000.00----1.00----------------------
..................................................................................................................................................................................TTTATTTTTATTTATTTTTATTTTTATTTTCTG.......................................331.000.00----1.00----------------------
..................................................................................................................................................................................TTTATTTTTATTTATTTTTATTTTTAAAAG..........................................301.000.00----1.00----------------------
...................................................TGAGGCCCCAGGCTGTCC.....................................................................................................................................................................................181.000.00-----------------1.00---------
.................................................................................................................................................................................TTTTATTTTTATTTATTTCGAG...................................................221.000.00-1.00-------------------------
.......................................................................................................TGGGAGGATCACTTGAGCTCAGGAGGTT.......................................................................................................................281.000.00----------1.00----------------
...........................................................................................................................AGGAGTTTGAGACCAGCCAGGGCAACGGGA.................................................................................................301.000.00---1.00-----------------------
..................................................................................................................................................................................TTTATTTTTATTTATTTTTATTTTAG..............................................261.000.00--1.00------------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTATTTG..........................................271.000.00----1.00----------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTAGAG............................................251.000.00-1.00-------------------------
..........................................................................................................GAGGATCACTTGAGCTCAGGAGTTTGAGACCA................................................................................................................3201.001.00---------1.00-----------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTTCTC............................................................211.000.00------1.00--------------------
........................................................................................................GGGAGGATCACTTGAGCTCAGGAGTTTGAGAC..................................................................................................................3201.001.00---------1.00-----------------
.........................................................................................................................................................................................TTATTTATTTTTATTTTTATTTTTTTATTG...................................301.000.001.00--------------------------
...............................................................................................................TCACTTGAGCTCAGGAGTCTAG.....................................................................................................................221.000.00-1.00-------------------------
........................................................................................................................................................................................TTTATTTATTTTTATTTTTATTTTTTTCCAG...................................311.000.001.00--------------------------
................................................................................................................................TTTGAGACCAGCCAGGGCAACGGC..................................................................................................241.000.00-1.00-------------------------
..........................................................................................................................................................................................TATTTATTTTTATTTTTATTTTTTTCCAG...................................291.000.001.00--------------------------
..................................................................................................................................................................................TTTATTTTTATTTATTTTTATTTTTCTTG...........................................291.000.001.00--------------------------
..............................................................................................................................................................................................TATTTTTATTTTTATTTTTTTCTAG...................................251.000.001.00--------------------------
........................................................................................TCTGGGAGGCTGAGGTGGGGCAG...........................................................................................................................................231.000.00---1.00-----------------------
...........................................................................................................................................................................................ATTTATTTTTATTTTTATTTTTTCG......................................251.000.00--1.00------------------------
.................................................................................................................................TTGAGACCAGCCAGGGCAACAGC..................................................................................................231.000.00-1.00-------------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTCTCG............................................251.000.00-----1.00---------------------
........................................................................................................................CTCAGGAGTTTGAGACCAGCCGGAC.........................................................................................................251.000.00-1.00-------------------------
............................................................................................................................................................................................TTTATTTTTATTTTTATTTTTTCATG....................................261.000.001.00--------------------------
...............................................................................................................................................................................................ATTTTTATTTTTATTTTTTTCGCG...................................241.000.00---1.00-----------------------
.........................................................................................................................................................................CAAAATTTTTTTATTTTTCT.............................................................201.000.00------1.00--------------------
.......................................................................................................................................................................................TTTTATTTATTTTTATTTTTATTACAG........................................271.000.00--1.00------------------------
..........................................................................................................................CAGGAGTTTGAGACCAGCCAGGGGC.......................................................................................................251.000.00------------------1.00--------
............................................................................................................................................................................................TTTATTTTTATTTTTATTTTTTTGGAGG..................................281.000.00-1.00-------------------------
....................................................................................................AGGTGGGAGGATCACTTGAGCTCAGGAGTCAG......................................................................................................................321.000.00---1.00-----------------------
...............................................................................................................................................................................TTTTTTATTTTTATTTATTTTTATTTTTATTTTTG........................................351.000.001.00--------------------------
......................................................................................................................................................................................TTTTTATTTATTTTTATTTTTATTTTTTTACAG...................................331.000.001.00--------------------------
.......................................................................................................................................................................................TTTTATTTATTTTTATTTTTATTTTTTTCTG....................................311.000.001.00--------------------------
........................................................................................TCTGGGAGGCTGAGGTGGGAGTC...........................................................................................................................................231.000.00---1.00-----------------------
......................................................................................TCTCTGGGAGGCTGAGGTGGGTGA............................................................................................................................................241.000.00---1.00-----------------------
......................................................................................................................................................................................TTTTTATTTATTTTTATTTTTAAG............................................241.000.00--1.00------------------------
........................................................................................TCTGGGAGGCTGAGGTGGGGGA............................................................................................................................................221.000.00---1.00-----------------------
......................................................................................TCTCTGGGAGGCTGAGGTGGGAGGATCACTTG....................................................................................................................................3230.330.33---0.33-----------------------
......................................................................................TCTCTGGGAGGCTGAGGTGGGAGGATCACT......................................................................................................................................3030.330.33-0.33-------------------------
.....................................................................................................................................................................................ATTTTTATTTATTTTTATTTTTATTTTTTTG......................................3190.220.220.22--------------------------
.................................................................................................................................TTGAGACCAGCCAGGGCAACATAGCGAG.............................................................................................2870.140.14---0.14-----------------------
................................................................................................................................TTTGAGACCAGCCAGGGCAACATAGCGA..............................................................................................2880.120.12---0.12-----------------------

Antisense strand
GAGGGCGGCGAGGACTACACGGGAGCCACTGTCATCGAGCCCCTCAAAGGGTGAGGCCCCAGGCTGGGTGCAGTTTTTACCTGTAATCTCTGGGAGGCTGAGGTGGGAGGATCACTTGAGCTCAGGAGTTTGAGACCAGCCAGGGCAACATAGCGAGGCCCCTGCTCCACAAAATTTTTTTATTTTTATTTATTTTTATTTTTATTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAG
...................................................................................(((.((((..((.(((.((((((.....)))))).))))).)))).))).....(((..((((...........))))..)))....................................................................................
..................................................................................83....................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PAZD5SRR189782DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
..............................................................GCTGGGTGCAGTTTTTATC......................................................................................................................................................................... 193.000.00------3.00--------------------
...................................................................................................................................................................................TTATTTTTATTTATTTTTATGG................................................. 221.000.00-------1.00-------------------
.................................................................................................................ACTTGAGCTCAGGAGTTTGAGATTA................................................................................................................ 251.000.00---------------1.00-----------
.............................................................................................GAGGCTGAGGTGGGAGGATCAG....................................................................................................................................... 221.000.00----------------1.00----------
.........................................................................................................GGAGGATCACTTGAGCTCAGGAGTTGCC..................................................................................................................... 281.000.00-1.00-------------------------
............................................................................................................GGATCACTTGAGCTCAGGAGTTTGAGACGTAA.............................................................................................................. 321.000.00------------------------1.00--
.....................................................................................................................................GACCAGCCAGGGCAACAGAAC................................................................................................ 211.000.00-1.00-------------------------
......................................................................................................................................CTATGTTGCCCTGGCTGGT................................................................................................. 1901.001.00----------1.00----------------
............................................................................................................GGATCACTTGAGCTCAGGAGTCTGC..................................................................................................................... 251.000.00---1.00-----------------------
...................................................................................................................................GAGACCAGCCAGGGCACTTT................................................................................................... 201.000.00--------------------1.00------
.................................................................................................................................TTGAGACCAGCCAGGGCAACAGCGA................................................................................................ 251.000.00-1.00-------------------------