ID: uc010eei.27
GENE: MLL4(28)
chr19:36222987-36223165+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(11)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(7)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
ATCCCGGAGGCCCTTGGGGGGTGTCTCCTTTGGCCCCCTGCCCTCCCCTGGTGAGCACCGGGCATGTGGGGGTTGGGGGTGGAGCCGCGGAGGTGGGAGCTGCTGGTAACACCAACCCTCCCCCCACAGGAAGTCCATCTTCACTGACCCACCACATCCCCACAGTGGGAGACCCGGAC
................................................................((((((((..(((((((..(((((((.........)))).)))..))))..)))..))))))))...................................................
.............................................................62.................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR040020(GSM532905)
G699N_2. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191538(GSM715648)
49genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)
..........................................................................................................TAACACCAACCCTCCCCCCACAGT.................................................24137.0014.003.005.001.005.00--4.001.002.002.00--2.00---1.001.00-1.00----1.00----1.00-1.00-----1.00-1.00-1.00---1.001.00---1.00-------
..........................................................................................................TAACACCAACCCTCCCCCCACAG..................................................23114.0014.004.00------1.00--3.001.00-1.00-------1.00--------------------1.001.00-------1.00------
..........................................................................................................TAACACCAACCCTCCCCCCACA...................................................2215.005.001.00-1.00------------1.00-------1.00--1.00-------------------------------
..................................................................TGGGGGTTGGGGGTGGAGCCGA...........................................................................................2215.001.00----5.00-----------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGC.................................................2414.0014.00--4.00-------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGA.................................................2413.0014.001.002.00--------------------------------------------------------
......................................................................................GCGGAGGTGGGAGCTGCTGG.........................................................................2012.002.00----------------------------1.00-------------------1.00---------
................................................................TGTGGGGGTTGGGGGTGGAGC..............................................................................................2112.002.00-----2.00----------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCAC....................................................2111.001.00-----------------1.00----------------------------------------
.........................................................................................................GTAACACCAACCCTCCCCCCACA...................................................2311.001.00-----------1.00----------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCATAG..................................................231.000.001.00---------------------------------------------------------
..................................................................TGGGGGTTGGGGGTGGAGCCG............................................................................................2111.001.00-----1.00----------------------------------------------------
....................................................................................CCGCGGAGGTGGGAGCTGC............................................................................1911.001.00----------------------------------------1.00-----------------
...................................................................................................................CCCTCCCCCCACAGGGGT..............................................181.000.00------------------------------------------------------1.00---
........................................................................TTGGGGGTGGAGCCGCGGAGG......................................................................................2111.001.00---------------------------1.00------------------------------
.........................................................................................GAGGTGGGAGCTGCTGTTTT......................................................................201.000.00--------------------------------1.00-------------------------
................................................................TGTGGGGGTTGGGGGTGGAGCT.............................................................................................2211.002.00--------------1.00-------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCACAG....................................................211.000.001.00---------------------------------------------------------
..................................................................TGGGGGTTGGGGGTGGAGCCGCT..........................................................................................231.000.00--1.00-------------------------------------------------------
...............................................................ATGTGGGGGTTGGGGGTGGAAA..............................................................................................221.000.00-----------------------------------1.00----------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGTAG...............................................2611.0014.00--------1.00-------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGTAT...............................................2611.0014.001.00---------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAT..................................................2311.005.00---------------------------------------------------------1.00
..........................................................................................................TAACACCAACCCTCCCCCCACAGTA................................................2511.0014.00---------1.00------------------------------------------------
......................................................................................................................................................ACCACATCCCCACAGATTT..........191.000.00----------------1.00-----------------------------------------
..................................................................TGGGGGTTGGGGGTGGAGTAA............................................................................................211.000.00-----1.00----------------------------------------------------
.................................................................GTGGGGGTTGGGGGTGGAGCCGTCT.........................................................................................251.000.00---------------------------------1.00------------------------
................................................................................................................................GGAAGTCCATCTTCATT..................................171.000.00---------------1.00------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGAA................................................2511.0014.00--------------------------------------1.00-------------------
..........................................................................................................TAACACCAACCCTCCCCCCATA...................................................221.000.001.00---------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCACAG...................................................221.000.001.00---------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGATA...............................................2611.0014.00-----------------------------------------------------1.00----
.........................................CCTCCCCTGGTGAGCGCC........................................................................................................................181.000.00----------------------1.00-----------------------------------
...............................................................ATGTGGGGGTTGGGGGTGGAGCC.............................................................................................2311.001.00-1.00--------------------------------------------------------
............................................................................................................................................TCACTGACCCACCACATCCCCACAG..............2511.001.00--------------------1.00-------------------------------------
......................................................................................GCGGAGGTGGGAGCTGGTG..........................................................................191.000.00-------------------------------------------------------1.00--
..........................................................................................................TAACACCAACCCTCCCCCCACAGTTT...............................................2611.0014.00-------------1.00--------------------------------------------
.........................................................................................................GTAACACCAACCCTCCCCCCA.....................................................2111.001.00----------------------------------1.00-----------------------
.......................................................................................................................................CATCTTCACTGACCCACCACAT......................2211.001.00------------------------------1.00---------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACT...................................................2211.001.001.00---------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCCACAGTC................................................2511.0014.00--1.00-------------------------------------------------------
..........................................................................................................TAACACCAACCCTCCCCCGACT...................................................221.000.00-------------------------------------------------1.00--------

Antisense strand
ATCCCGGAGGCCCTTGGGGGGTGTCTCCTTTGGCCCCCTGCCCTCCCCTGGTGAGCACCGGGCATGTGGGGGTTGGGGGTGGAGCCGCGGAGGTGGGAGCTGCTGGTAACACCAACCCTCCCCCCACAGGAAGTCCATCTTCACTGACCCACCACATCCCCACAGTGGGAGACCCGGAC
................................................................((((((((..(((((((..(((((((.........)))).)))..))))..)))..))))))))...................................................
.............................................................62.................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR040020(GSM532905)
G699N_2. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191538(GSM715648)
49genomic small RNA (size selected RNA from t. (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)
.............................................................................................................CACCAACCCTCCCCCGAA.................................................... 182.000.00------------------2.00---------------------------------------
.............................................................................................................................ACAGGAAGTCCATCTTT..................................... 171.000.00-------------------------1.00--------------------------------
..............................................................................................................ACCAACCCTCCCCCCAGGT.................................................. 191.000.00--------------------------------------------------------1.00-
.................................................................................................................AACCCTCCCCCCACATTTT............................................... 191.000.00------------------------------------1.00---------------------
...................................................................................................................................AGTCCATCTTCACTGCATA............................. 191.000.00----------------------------------------------------1.00-----
.................................................................................................................AACCCTCCCCCCACATGTT............................................... 191.000.00-----------------------------------------------1.00----------
......................................................................GGTTGGGGGTGGAGCTCAA.......................................................................................... 191.000.00-------1.00--------------------------------------------------
..................................................................................................................ACCCTCCCCCCACAGGAG............................................... 181.000.00--------------1.00-------------------------------------------
...........................................TCCCCTGGTGAGCACATCC..................................................................................................................... 191.000.00--------------------------------------------1.00-------------