ID: uc010dxk.2_intron_0_0_chr19_10823874_f
GENE: DNM2(1)
chr19:10823824-10824094+


(1)
B-CELL
(4)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(3)
CERVIX
(1)
HEART
(2)
LIVER
(2)
OTHER
(14)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
ATCGTGGAGAAGCGCTTCCCGGACTTCGTGCGGGACTTCATGGGCGCCATGTACGGGGATCCCACCCTCTGTCCCACCTGGGCCACTGACGCTCTGGCCTCTGTGGGAATCACACTGGGCTGACCTGGCATTGGGAGAGGGAGGGAGGAAGGAAGGGAGGGAGGGGCTGGAAGATACTGAAGGATTCCTTTTTGAAAGGTTTTTTTTATTGTAACTTACAGAGTGTGTCTGTGTCTTCTTGAGGAAGTGGCCTGTCTGGGTCCCCCTCCCA
........................................................................................................(((((((...(((((....)))))..((.(((((((((.......((.......((......))........))......))))))))).)).)))))))...................................................................
....................................................................................................101.....................................................................................................205................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040010(GSM532895)
G529N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
.........................................................................................................GGAATCACACTGGGCTGACC..................................................................................................................................................20113.0013.0013.00-------------------------------------------
....................................................................................ACTGACGCTCTGGCCTCTGTGG.....................................................................................................................................................................2213.003.00---3.00----------------------------------------
....................................................................................................................................................................................AGGATTCCTTTTTGAAAGGTT......................................................................2113.003.00---------------------1.00---1.00-1.00----------------
.............................................................................................................................................................AGGGAGGGGCTGGAAAATT...............................................................................................192.000.00-2.00------------------------------------------
................................................................................................................................................GAGGAAGGAAGGGAGGGAGGGGC........................................................................................................2312.002.00----1.001.00--------------------------------------
.................................................................................................................................................................AGGGGCTGGAAGATACT.............................................................................................1712.002.00----------2.00---------------------------------
........GAAGCGCTTCCCGGACTT.....................................................................................................................................................................................................................................................1812.002.00-----------2.00--------------------------------
.................................................................................................................................................AGGAAGGAAGGGAGGGAGGCAAG.......................................................................................................231.000.00------1.00-------------------------------------
.................................................................................................................ACTGGGCTGACCTGGCAT............................................................................................................................................1811.001.00--------------------1.00-----------------------
............................................................................................................ATCACACTGGGCTGACCTGGCAC............................................................................................................................................231.000.00------1.00-------------------------------------
..........................................................................................................................................................GGGAGGGAGGGGCTGGTAG..................................................................................................191.000.00-1.00------------------------------------------
................................................................................................................................................................................................................................................GAGGAAGTGGCCTGTAT..............171.000.00----------------1.00---------------------------
............CGCTTCCCGGACTTCGTGCGG..............................................................................................................................................................................................................................................2111.001.00--------------------------1.00-----------------
................................................................................................................CACTGGGCTGACCTGGCATTGGGAGA.....................................................................................................................................2611.001.00--------1.00-----------------------------------
..................................................................................................................CTGGGCTGACCTGGCAG............................................................................................................................................171.000.00---------1.00----------------------------------
....................................................................................................................................GGGAGAGGGAGGGAGGATTA.......................................................................................................................201.000.00-------------1.00------------------------------
.................................................................................................................................................AGGAAGGAAGGGAGGGC.............................................................................................................171.000.00--------------------------------1.00-----------
.........................................................................................................................................................................GAAGATACTGAAGGATTCCTTTTTGAAAGGTT......................................................................3211.001.00-----------------------------------1.00--------
..CGTGGAGAAGCGCTTCCC...........................................................................................................................................................................................................................................................1811.001.00----1.00---------------------------------------
........................TTCGTGCGGGACTTCATGGGCGCC...............................................................................................................................................................................................................................2411.001.00-------------------------------------1.00------
.............................................................................CTGGGCCACTGACGC...................................................................................................................................................................................1511.001.00------------1.00-------------------------------
......................................................................GTCCCACCTGGGCCACCA.......................................................................................................................................................................................181.000.00------------------------1.00-------------------
..................................................................................................................................TTGGGAGAGGGAGGGCGGT..........................................................................................................................191.000.00-----------------------------1.00--------------
..............................................................................................................................................................GGGAGGGGCTGGAAGATA...............................................................................................1821.001.00------------------1.00-------------------------
................................................................................................................................................GAGGAAGGAAGGGAGGGAAAAC.........................................................................................................221.000.00------------------------------------1.00-------
.................................................................................GCCACTGACGCTCTGGCCTCTGTG......................................................................................................................................................................2411.001.00-------------------------------1.00------------
.....................................................................................................TGTGGGAATCACACTGGGCTGACCTGGC..............................................................................................................................................2811.001.00---------------------------------1.00----------
..................................................................................CCACTGACGCTCTGGCCTCTGTGGG....................................................................................................................................................................2511.001.00----1.00---------------------------------------
............................................CGCCATGTACGGGGATCCCAC..............................................................................................................................................................................................................2111.001.00-----------------1.00--------------------------
..............................................................................TGGGCCACTGACGCTC.................................................................................................................................................................................1611.001.00------------1.00-------------------------------
......................ACTTCGTGCGGGACTTCATGGGC..................................................................................................................................................................................................................................2311.001.00--------1.00-----------------------------------
...................................................................................................................................................................GGGCTGGAAGATACTGAAC.........................................................................................191.000.00-1.00------------------------------------------
..........................................................................................................................................................GGGAGGGAGGGGCTGGAAG..................................................................................................1911.001.00-1.00------------------------------------------
....................................................................................................................................GGGAGAGGGAGGGAGGATA........................................................................................................................191.000.00----------------------------1.00---------------
.......................................................................................................................................................................TGGAAGATACTGAAGGATTCCT..................................................................................2211.001.00----------------------------------1.00---------
...........................................................................................................................................GGAGGGAGGAAGGAAGGGAGGGGAG...........................................................................................................251.000.00--1.00-----------------------------------------
........................................................................................................................................................................GGAAGATACTGAAGGATTCCT..................................................................................2111.001.00-----1.00--------------------------------------
.................................................................................................................................................AGGAAGGAAGGGAGGTTC............................................................................................................181.000.00------1.00-------------------------------------
...............................................................................................................................................GGAGGAAGGAAGGGAGGGAGGGGC........................................................................................................2411.001.00-----1.00--------------------------------------
................................................................................................................CACTGGGCTGACCTGGC..............................................................................................................................................1720.500.50--------------------------------------0.50-----
...............................................................................................................................................................................................................................................TGAGGAAGTGGCCTGTATAG............2040.500.25-----------------------0.50--------------------
.......................................................................................................TGGGAATCACACTGGGC.......................................................................................................................................................1720.500.50--------0.50-----------------------------------
....................................................................................................................................................................................................AGGTTTTTTTTATTGTA..........................................................1730.330.33---------------------------------------0.33----
...............................................................................................................................................................................................................................................TGAGGAAGTGGCCTGT................1640.250.25----------------------------------------0.25---
...............................................................................................................................................................................................................................................TGAGGAAGTGGCCTGTAGAG............2040.250.25-----------------------0.25--------------------
...............................................................................................................................................................................................................................................TGAGGAAGTGGCCTGTAG..............1840.250.25-----------------------0.25--------------------
....................................................................................................................................................AAGGAAGGGAGGGAGGGGC........................................................................................................1990.220.22------------------------------------------0.110.11

Antisense strand
ATCGTGGAGAAGCGCTTCCCGGACTTCGTGCGGGACTTCATGGGCGCCATGTACGGGGATCCCACCCTCTGTCCCACCTGGGCCACTGACGCTCTGGCCTCTGTGGGAATCACACTGGGCTGACCTGGCATTGGGAGAGGGAGGGAGGAAGGAAGGGAGGGAGGGGCTGGAAGATACTGAAGGATTCCTTTTTGAAAGGTTTTTTTTATTGTAACTTACAGAGTGTGTCTGTGTCTTCTTGAGGAAGTGGCCTGTCTGGGTCCCCCTCCCA
........................................................................................................(((((((...(((((....)))))..((.(((((((((.......((.......((......))........))......))))))))).)).)))))))...................................................................
....................................................................................................101.....................................................................................................205................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040010(GSM532895)
G529N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
..........................................................................................................................................GGGAGGGAGGAAGGAAGGGAGGGAACC.......................................................................................................... 271.000.00-------1.00------------------------------------
..........................................................................................................................................GGGAGGGAGGAAGGAAGGGAGGGATCC.......................................................................................................... 271.000.00----------------------1.00---------------------
...........................................................................................................................................CCAGCCCCTCCCTCCCTTCCTTCCTCCCTCC..................................................................................................... 3111.001.00---------1.00----------------------------------
.....................................................................................................................................GGAGAGGGAGGGAGGAAGGAAGGGTTC............................................................................................................... 271.000.00-------1.00------------------------------------
..........................................................................................................................................................GGGAGGGAGGGGCTGGAGA.................................................................................................. 191.000.00--------------1.00-----------------------------
.........................................................................................................................................AGGGAGGGAGGAAGGAAGGGAA................................................................................................................ 221.000.00--1.00-----------------------------------------
.......................................................................................................................................AGAGGGAGGGAGGAAGGAAGGGATTAA............................................................................................................. 271.000.00--1.00-----------------------------------------
...............................................................................................................................................GGAGGAAGGAAGGGAGGGGCT........................................................................................................... 211.000.00-------1.00------------------------------------
........................................................................................................................................GAGGGAGGGAGGAAGGAAGGGAGGGCCG........................................................................................................... 281.000.00-------------------1.00------------------------
...........................................................................................................................................GGAGGGAGGAAGGAAGGGAGGGAGGTTTG....................................................................................................... 291.000.00--1.00-----------------------------------------
.TCGTGGAGAAGCGCTGGGA........................................................................................................................................................................................................................................................... 191.000.00---------------1.00----------------------------
..........................................................................................................................................GGGAGGGAGGAAGGAAGGGAGGGCTC........................................................................................................... 261.000.00------------------------------1.00-------------
...........................................................TGGGACAGAGGGTGGGA................................................................................................................................................................................................... 1740.250.25-----------------------------------------0.25--
.......................................................................................................................................CTCCCTCCCTTCCTTCCTCCCTCCCTCT............................................................................................................ 2860.170.17--0.17-----------------------------------------
.......................................................................................................................................CCCTCCCTTCCTTCCTCCCTCCCTCT.............................................................................................................. 2680.120.12--0.12-----------------------------------------