ID: uc010dut.2_intron_5_0_chr19_6430630_r.3p
GENE: (2)
chr19:6430580-6430829-


(1)
AGO1.ip
(3)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(19)
CELL-LINE
(2)
CERVIX
(1)
HELA
(1)
LIVER
(3)
OTHER
(1)
UTERUS

Sense strand
AACAAAAAAACAAGAAAGAAAAGGAAAAGAAGGCCAGGCGCGGTGGCTGATGCCTGTAATCCCAGCAATTTGGGGGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCAAACCCCCAGCTCTACTAAAAATACAAAAATAAGCCAGGCGTGGTGACACTAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACCTGGGAGGCGGAGG
...................................................................................................((((.((....)).)))).(((((.....)).)))...................................((((((((....)))..)))))...........................................................
................................................................................................97.............................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040019(GSM532904)
G701T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
.....................................................................................................TCAGGAGTTCCAGACCAGCCGGCC.............................................................................................................................2415.000.005.0010.00----------------------------
....................................................................................................................................................................TAAGCCAGGCGTGGTGACACATGT..............................................................243.000.00--3.00---------------------------
....................................................................................................................................................................TAAGCCAGGCGTGGTGACACATG...............................................................233.000.00--3.00---------------------------
.....................................................................................................TCAGGAGTTCCAGACCAGCCAAGG.............................................................................................................................242.000.00-2.00----------------------------
...................................AGGCGCGGTGGCTGAGGG.....................................................................................................................................................................................................182.000.00---------2.00--------------------
...................................................................................TGGGCAGATCACCTGAGGTCAGGAGCCGG..........................................................................................................................................292.000.002.00-----------------------------
.................................................................................................................................................................................................................................ATCGCCTGAACCTGGGAGGCGGAGGG262.000.001.001.00----------------------------
...................................................................................TGGGCAGATCACCTGAGGTCAGGAGTCGG..........................................................................................................................................292.000.00-2.00----------------------------
...............................................................................................................CAGACCAGCCTGGCCAACTAAA.....................................................................................................................221.000.001.00-----------------------------
....................................................................................................................................................................TAAGCCAGGCGTGGTGACACAT................................................................221.000.00--1.00---------------------------
................................GCCAGGCGCGGTGGCTGACTTG....................................................................................................................................................................................................221.000.00---------------------1.00--------
......................................................................................................................................................................................................AGCTACTCGGGAGGCTGAGGCAGGTTTT........................281.000.00-1.00----------------------------
..................................................................................................AGGTCAGGAGTTCCAGACCAGCCGGC..............................................................................................................................261.000.001.00-----------------------------
.............................................................................................................................................................................................................................GAGAATCGCCTGAACCTGGGAAG......231.000.00---1.00--------------------------
.....................................................................................................................................................................AAGCCAGGCGTGGTGACACACG...............................................................221.000.00--1.00---------------------------
.......................................................................................................AGGAGTTCCAGACCAGCCGGC..............................................................................................................................211.000.001.00-----------------------------
.............................................................................................................TCCAGACCAGCCTGGCCAACTGCG.....................................................................................................................241.000.00-1.00----------------------------
..............................................CTGATGCCTGTAATCCCAGC........................................................................................................................................................................................2001.001.00-------1.00----------------------
.....................................................................................................TCAGGAGTTCCAGACCAGCCCAAC.............................................................................................................................241.000.00-1.00----------------------------
.............................................................................................................................................................................................................................GAGAATCGCCTGAACCTGGGAGGCGGAGGTTG321.000.00---1.00--------------------------
...........................................................................................................................................CCCAGCTCTACTAAAGAGA............................................................................................191.000.00-----------------1.00------------
..........................................................................................................................................................................................................ACTCGGGAGGCTGAGGCAGGTTTT........................241.000.00----------------1.00-------------
...................................................................................TGGGCAGATCACCTGAGGTCAGGAGCATG..........................................................................................................................................291.000.00-------------1.00----------------
.................................................................................................................................................................................................................................ATCGCCTGAACCTGGGAGGCGGAGGGCGC291.000.001.00-----------------------------
................................................................................AGGTGGGCAGATCACCTGAGGTCAGGAGCCC...........................................................................................................................................311.000.001.00-----------------------------
.................................................................................................................................................................................................ATCCCAGCTACTCGGGAGGCTGAGGCAGCCG..........................311.000.001.00-----------------------------
................................................................................AGGTGGGCAGATCACCTGAGGTCAGGCTTG............................................................................................................................................301.000.001.00-----------------------------
.................................................................................................................................................................................................................................ATCGCCTGAACCTGGGAGGCGGACG251.000.00-1.00----------------------------
.................................................................................................................................................................................................................................ATCGCCTGAACCTGGGAGGCGCAGG251.000.00-1.00----------------------------
..................................................................................................AGGTCAGGAGTTCCAGACCAGCCGGCC.............................................................................................................................271.000.001.00-----------------------------
..................................................................................................................................................................................................................GGCTGAGGCAGGAGAATCGCCTGGAG..............261.000.00------------------------1.00-----
......................................................................................................................................................................................................................................CTGAACCTGGGAGGCGG...1701.001.00--------------------1.00---------
.............................................................................................................................................................................................TGTAATCCCAGCTACTCGGGCGT......................................231.000.00------------------1.00-----------
................................................................................................................................................................................................................................AATCGCCTGAACCTGGGAGACTG...231.000.00-1.00----------------------------
.....................................................................................................TCAGGAGTTCCAGACCAGCCGGCA.............................................................................................................................241.000.00-1.00----------------------------
......................................................................................GCAGATCACCTGAGGTCAGGACT.............................................................................................................................................231.000.00-----1.00------------------------
...............................................................................AAGGTGGGCAGATCACCTGAGGTCAGGACCTT...........................................................................................................................................321.000.00--------1.00---------------------
...................................................................................................................................................................................................................GCTGAGGCAGGAGAATCGCCTGAAATCG...........281.000.00--------1.00---------------------
.......................................................................................................AGGAGTTCCAGACCAGCGGCC..............................................................................................................................211.000.001.00-----------------------------
...................................................................................................................................................................................................................................CGCCTGAACCTGGGAGGCGGAGGATGT271.000.001.00-----------------------------
..............................................................................................................................................................................................................................AGAATCGCCTGAACCTGGGAGGC.....2301.001.00-------------------------1.00----
.........................AAAGAAGGCCAGGCGCGGTGGCAC.........................................................................................................................................................................................................241.000.001.00-----------------------------
.....................................................................................................TCAGGAGTTCCAGACCAGCCGGC..............................................................................................................................231.000.00-1.00----------------------------
.......................................................................................................AGGAGTTCCAGACCAGCCGGCC.............................................................................................................................221.000.001.00-----------------------------
.....................................................................................................................................................................................................................................CCTGAACCTGGGAGGCGG...1801.001.00-----------------------1.00------
.....................................................................................................TCAGGAGTTCCAGACCAGCCGACC.............................................................................................................................241.000.001.00-----------------------------
............................................................................................................TTCCAGACCAGCCTGGCCAACTCGA.....................................................................................................................251.000.00-1.00----------------------------
.............................................................................................................................................................................................................................GAGAATCGCCTGAACC.............1601.001.00-------1.00----------------------
...................................................................................TGGGCAGATCACCTGAGGTCAGGAGTCGAG.........................................................................................................................................301.000.001.00-----------------------------
...........................................................................................................................................................................................CCTGTAATCCCAGCTACTCGGGCGT......................................251.000.00---------------1.00--------------
................................................................................AGGTGGGCAGATCACCTGAGGTCAGGCTC.............................................................................................................................................291.000.00-1.00----------------------------
.................................................................................................................................................................................................................................ATCGCCTGAACCTGGGAGGCGGAC.241.000.001.00-----------------------------
.............................................................................................ACCTGAGGTCAGGAGTTCCAGACCAGCCACGG.............................................................................................................................321.000.001.00-----------------------------

Antisense strand
AACAAAAAAACAAGAAAGAAAAGGAAAAGAAGGCCAGGCGCGGTGGCTGATGCCTGTAATCCCAGCAATTTGGGGGGCCAAGGTGGGCAGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCAAACCCCCAGCTCTACTAAAAATACAAAAATAAGCCAGGCGTGGTGACACTAGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCCTGAACCTGGGAGGCGGAGG
...................................................................................................((((.((....)).)))).(((((.....)).)))...................................((((((((....)))..)))))...........................................................
................................................................................................97.............................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040019(GSM532904)
G701T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR038861(GSM458544)
MM466. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................................................TGGGCAGATCACCTGAGGTCAAGA............................................................................................................................................... 243.000.00----3.00-------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAACATGGG.................................................................................................................... 302.000.002.00-----------------------------
......................................................................................................................GCCTGGCCAACATGGCAAAGATG............................................................................................................. 232.000.00-2.00----------------------------
...........................AGAAGGCCAGGCGCGGTGGCTGG........................................................................................................................................................................................................ 231.000.001.00-----------------------------
...................................................................................................................CCAGCCTGGCCAACATGGCAAAGAGG............................................................................................................. 261.000.00-1.00----------------------------
......................................................................................................................................AAACCCCCAGCTCTACTAAAAATAA........................................................................................... 251.000.00-1.00----------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAGACT....................................................................................................................... 271.000.001.00-----------------------------
...............AAGAAAAGGAAAAGAACTAG....................................................................................................................................................................................................................... 201.000.001.00-----------------------------
.........................................................AATCCCAGCAATTTGGGGGCCAG.......................................................................................................................................................................... 231.000.00------------1.00-----------------
.................................................................................................GAGGTCAGGAGTTCCAGACGGGT.................................................................................................................................. 231.000.00----------1.00-------------------
......................................................................................................CAGGAGTTCCAGACCAGCCTTCG............................................................................................................................. 231.000.00----------------------1.00-------
......................................................................................................................GCCTGGCCAACATGGCAAAGTG.............................................................................................................. 221.000.001.00-----------------------------
........................................................................GGGGGCCAAGGTGGGCAGATAGAG.......................................................................................................................................................... 241.000.001.00-----------------------------
........................................................................GGGGGCCAAGGTGGGCAGAAGAG........................................................................................................................................................... 231.000.001.00-----------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAACATGAC.................................................................................................................... 301.000.00-1.00----------------------------
..............................................................................................CCTGAGGTCAGGAGTTCCC......................................................................................................................................... 191.000.00------1.00-----------------------
....................................................................................................................CAGCCTGGCCAACATGGCAAACATG............................................................................................................. 251.000.001.00-----------------------------
...............AAGAAAAGGAAAAGAAGGCCT...................................................................................................................................................................................................................... 211.000.00--------------1.00---------------
...................................................................................................GGTCAGGAGTTCCAGACCAGCCTGGCCACAGG....................................................................................................................... 321.000.001.00-----------------------------
.......AAACAAGAAAGAAAAGCTAC............................................................................................................................................................................................................................... 201.000.00--------1.00---------------------
....................................................................................................................................................................................................................CTGAGGCAGGAGAATCGCCTTAT............... 231.000.00-----------1.00------------------
.....................................................................................GTCTGGAACTCCTGACCTCAGGTGATCTGCC...................................................................................................................................... 3101.001.00-----1.00------------------------
...............AAGAAAAGGAAAAGAAGCCAG...................................................................................................................................................................................................................... 211.000.00-------------1.00----------------
....................................................................................................................CAGCCTGGCCAACATGGCAACAGC.............................................................................................................. 241.000.00-1.00----------------------------
.................................................................................GGTGGGCAGATCACCTGAGGTCAGGCC.............................................................................................................................................. 271.000.001.00-----------------------------
..............................................................................................CCTGAGGTCAGGAGTTCCAGACCGT................................................................................................................................... 251.000.001.00-----------------------------
........................................................................................................................................................................................TAGCCTGTAATCCCACACT............................................... 191.000.00--------------------------1.00---
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAAAACC...................................................................................................................... 281.000.001.00-----------------------------
...................................................................................................................CCAGCCTGGCCAACATGGCAAGCGA.............................................................................................................. 251.000.001.00-----------------------------
............................................................................................................ATGTTGGCCAGGCTGGTCTGGAA....................................................................................................................... 2301.001.00-----1.00------------------------
.........................................................................GGGGCCAAGGTGGGCAGATCAAG.......................................................................................................................................................... 231.000.001.00-----------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAAGT........................................................................................................................ 261.000.00----1.00-------------------------
.....................................................................................................................................................................AAGCCAGGCGTGGTGACATG................................................................. 201.000.001.00-----------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAACAGGGC.................................................................................................................... 301.000.001.00-----------------------------
.........................................................................GGGGCCAAGGTGGGCAGATAGAG.......................................................................................................................................................... 231.000.001.00-----------------------------
...........................................................................................................................................................................................................................GTTCAGGCGATTCTCCT.............. 1701.001.00---1.00--------------------------
...........................................................................................................GTTCCAGACCAGCCTGGCCAAGCC....................................................................................................................... 241.000.00------1.00-----------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGA............................................................................................................................. 211.000.00-----1.00------------------------
...................................................................................................................CCAGCCTGGCCAACATGGCAAAATTC............................................................................................................. 261.000.001.00-----------------------------
...................................................................................TGGGCAGATCACCTGAGGTCAAAA............................................................................................................................................... 241.000.00----1.00-------------------------
..........................................................................................................................................CCCCAGCTCTACTAACAA.............................................................................................. 181.000.00---------------------------1.00--
.....................................................................................................TCAGGAGTTCCAGACCAGCCTGGCCAAGGGC...................................................................................................................... 311.000.00-1.00----------------------------
..............................................................................................................ATGTTGGCCAGGCTGGTCTGG....................................................................................................................... 2101.001.00-------1.00----------------------
...........................................................................................................GTTCCAGACCAGCCTGGCCAGC......................................................................................................................... 221.000.00----------1.00-------------------
...................................................................................................GGTCAGGAGTTCCAGACCAGCCTCAAG............................................................................................................................ 271.000.001.00-----------------------------
...................................................................................................................................................................................................................................CGCCTGAACCTGGGAGGCGGAGTT 241.000.001.00-----------------------------
.............................................................................................................TCCAGACCAGCCTGGCCAACACCCC.................................................................................................................... 251.000.001.00-----------------------------
..........................................................................................................AGTTCCAGACCAGCCTGGCCAACAC....................................................................................................................... 251.000.00------1.00-----------------------
...................................................................................................................CCAGCCTGGCCAACATGGCAAAGGGT............................................................................................................. 261.000.00-1.00----------------------------
...AAAAAAACAAGAAAGACTGG................................................................................................................................................................................................................................... 201.000.00-1.00----------------------------
..............................................................................................CCTGAGGTCAGGAGTTCCAC........................................................................................................................................ 201.000.00---1.00--------------------------
..........................................................................................................................................CCCCAGCTCTACTAAAAATCTCC......................................................................................... 231.000.00-1.00----------------------------
..CAAAAAAACAAGAAAGAAAAGG.................................................................................................................................................................................................................................. 221.000.001.00-----------------------------
........................................................................GGGGGCCAAGGTGGGCAGATACAG.......................................................................................................................................................... 241.000.001.00-----------------------------
...............AAGAAAAGGAAAAGAACCAG....................................................................................................................................................................................................................... 201.000.00------------1.00-----------------
..........................................................................................ATCACCTGAGGTCAGGAGTTCCAGA....................................................................................................................................... 251.000.00-------------------1.00----------
........................................................................GGGGGCCAAGGTGGGCAGATAAG........................................................................................................................................................... 231.000.001.00-----------------------------
.......................................................................................................................................AACCCCCAGCTCTACTAAAAATCTTC......................................................................................... 261.000.00-1.00----------------------------
...................................................................................................................CCAGCCTGGCCAACATGGCAAACGC.............................................................................................................. 251.000.00-1.00----------------------------
...............................................................................................................................................................AAAAATAAGCCAGGCGTGGTCAAC................................................................... 241.000.001.00-----------------------------
..................................................................................................AGGTCAGGAGTTCCAGACCAGCCTAGC............................................................................................................................. 271.000.00-1.00----------------------------
..................................................................................................................................................................................................................GGCTGAGGCAGGAGAATCGCCTCGCC.............. 261.000.001.00-----------------------------
.....................................................................................................................................................................................................................TGAGGCAGGAGAATCGCCTGAATA............. 241.000.00-----------1.00------------------
..........................................................................................................................................TTTTGTATTTTTAGTAGAGCTGGGG....................................................................................... 2501.001.00---1.00--------------------------
................................................................................................................................................................................................................GAGGCTGAGGCAGGAGAATCGCCTGAATCCC........... 311.000.001.00-----------------------------
........................................................................................................GGAGTTCCAGACCAGCCTGGCCAAGACT...................................................................................................................... 281.000.001.00-----------------------------
...TTTCCTTTTCTTTCTTGTTTTTTT............................................................................................................................................................................................................................... 2420.500.50-0.50----------------------------
...................................................................................................................CTGGGGGTTTGCCATGTTGGCCAGGCTGG.......................................................................................................... 2920.500.50----------------------------0.50-
....................................................................................................................................TTTAGTAGAGCTGGGGGTTTGC................................................................................................ 2220.500.500.50-----------------------------
........................................................................................................................................TTAGTAGAGCTGGGGGT................................................................................................. 1790.110.11-----------------------------0.11