ID: uc010dmd.1_intron_5_0_chr18_30275516_r.3p
GENE: (1)
chr18:30275466-30275715-


(1)
B-CELL
(4)
BRAIN
(11)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
OTHER
(2)
SKIN

Sense strand
AACCGCTGGGAACACACCACCGAGTCACTGCATAGGGATCCCTGGATTGGTGAGTAGTGGCTTGGCCACCTGTTCAATCTTCTTCCTCTGACTCAGTCTCACATTTTATGCACTTCAGTGAAACAAATAGCCAGTGAGCCAAGGTAGCAAATCCTGAGATGGAAAATTTCATATGTCTTTTTTTTTTTTCTTAATTTCAGTTATGCCATACAACAGTGCCCACCACTGCGTTGTGGAGGTGGAAAACTTC
.....................................................................................................................................((..((....)).)).....(((((((((((((...................))))))..)))))))..................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTAAAATG....................................................2314.000.00-1.008.00-5.00----------------------------
.............................................................................................................................................................................TGTCTTTTTTTTTTTTCTTCCAG......................................................233.000.003.00--------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTTCAAG.................................................252.000.00-2.00-------------------------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTCCG...................................................212.000.00---1.00--------1.00--------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTCTG...................................................232.000.00-1.00-1.00-----------------------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTATGG..................................................221.000.00---1.00-----------------------------
...................................................................................................................................CAGTGAGCCAAGGTAGAACT...................................................................................................201.000.00--------------------1.00------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTCCG...................................................221.000.00---1.00-----------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTTCAGGCA...............................................261.000.001.00--------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTACAGG.....................................................221.000.001.00--------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTAATTTCAGTAGG..............................................291.000.001.00--------------------------------
............................................................................................................................................................................ATGTCTTTTTTTTTTTTCGCC.........................................................211.000.00-----1.00---------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTTAAT..................................................241.000.001.00--------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTACCTG.....................................................211.000.00---1.00-----------------------------
.........................................................................................................................................................................CATATGTCTTTTTTTTTTTTCTTAG........................................................251.000.00-1.00-------------------------------
.......................................CCCTGGATTGGTGAGTAGTGGCTTT..........................................................................................................................................................................................251.000.00---------1.00-----------------------
...........................................................................................................................................................................TATGTCTTTTTTTTTTTTCCCC.........................................................221.000.00-----1.00---------------------------
..............................................................................................................................................................................GTCTTTTTTTTTTTTCTTAAAGG.....................................................231.000.001.00--------------------------------
.........................................................................................................................................................................CATATGTCTTTTTTTTTG...............................................................181.000.00-1.00-------------------------------
.......................................CCCTGGATTGGTGAGTAGTGGCTTG..........................................................................................................................................................................................2511.001.00---------1.00-----------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTTCAATT................................................251.000.00-1.00-------------------------------
.............................................................................................................................................................................TGTCTTTTTTTTTTTTCTTGGTG......................................................231.000.00-----1.00---------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTACTCG.....................................................211.000.00----1.00----------------------------
.............................................................................TCTTCTTCCTCTGACTTAAC.........................................................................................................................................................201.000.00--------------1.00------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTTCTAG.................................................241.000.00-1.00-------------------------------
.............................................................................................................................................................................TGTCTTTTTTTTTTTTCGGGC........................................................211.000.001.00--------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTTCATA.................................................251.000.00---1.00-----------------------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTTCAGTTGG..............................................261.000.001.00--------------------------------
............................................................................................................................................................................ATGTCTTTTTTTTTTTTCTGGTC.......................................................231.000.001.00--------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTAATCC.....................................................221.000.00---1.00-----------------------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTACG...................................................211.000.00-1.00-------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTTTTAT.................................................251.000.001.00--------------------------------
............................................................................................................................................................................ATGTCTTTTTTTTTTTTCTCGG........................................................221.000.00-----1.00---------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTTATTC.................................................241.000.00-----1.00---------------------------
...................................................................................................................................................................................................................................GCGTTGTGGAGGTGGCGG.....181.000.00------------------1.00--------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTTCTAG.................................................231.000.00-1.00-------------------------------
........................................................................................................................................................................TCATATGTCTTTTTTTTTTTTGG...........................................................231.000.00------------1.00--------------------
.............................................................................................................................................................................TGTCTTTTTTTTTTTTCTTCCCA......................................................231.000.001.00--------------------------------
..........................................................................................................................................................................ATATGTCTTTTTTTTTTCTTC...........................................................211.000.00-----1.00---------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATCCAG...................................................231.000.00-1.00-------------------------------
..........................................................................................................................................................................ATATGTCTTTTTTTTTTCCCC...........................................................211.000.001.00--------------------------------
............................................................................................................................................................................ATGTCTTTTTTTTTTTTCTTCA........................................................221.000.001.00--------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTAATTTCAAAG................................................261.000.00-1.00-------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTAATTCTG...................................................241.000.00-1.00-------------------------------
..........................................................................................................................................................................ATATGTCTTTTTTTTTTTTCCCC.........................................................231.000.001.00--------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTACCTG.....................................................221.000.00-1.00-------------------------------
..................................................................................................................................................................................TTTTTTTTTTTCTTAATTTCG...................................................211.000.00-1.00-------------------------------
...............................................................................................................................................................................TCTTTTTTTTTTTTCTTACGTG.....................................................221.000.00--1.00------------------------------
...................................................................................................................................................................................TTTTTTTTTTCTTAATTTCAGTCG...............................................241.000.001.00--------------------------------
................................................................................................................................................................................CTTTTTTTTTTTTCTTACTTT.....................................................211.000.001.00--------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTAATTTCTTG.................................................241.000.00---1.00-----------------------------
..........................................................................................................................................................................ATATGTCTTTTTTTTTTTTCTTCCC.......................................................251.000.001.00--------------------------------
............................................................................................................................................................................ATGTCTTTTTTTTTTTTCTTTTGG......................................................241.000.001.00--------------------------------
....................................................................................................................................................................................TTTTTTTTTCTTAATTTCAG..................................................2080.380.38---0.38-----------------------------

Antisense strand
AACCGCTGGGAACACACCACCGAGTCACTGCATAGGGATCCCTGGATTGGTGAGTAGTGGCTTGGCCACCTGTTCAATCTTCTTCCTCTGACTCAGTCTCACATTTTATGCACTTCAGTGAAACAAATAGCCAGTGAGCCAAGGTAGCAAATCCTGAGATGGAAAATTTCATATGTCTTTTTTTTTTTTCTTAATTTCAGTTATGCCATACAACAGTGCCCACCACTGCGTTGTGGAGGTGGAAAACTTC
.....................................................................................................................................((..((....)).)).....(((((((((((((...................))))))..)))))))..................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
........................................................................TTCAATCTTCTTCCTCTTAGA............................................................................................................................................................. 213.000.00---------------1.00------------1.00--1.00-
.....................................................................CTGTTCAATCTTCTTCCTCTT................................................................................................................................................................ 213.000.00--------2.00------------1.00-----------
.....................................................................AGAGGAAGAAGATTGAACAG................................................................................................................................................................. 2011.001.00------1.00--------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCTTATAGT..................................................... 201.000.00-------1.00-------------------------
........................................................................TTCAATCTTCTTCCTCTTTAT............................................................................................................................................................. 211.000.00-----------------1.00---------------
.......................................................................GTTCAATCTTCTTCCTCTG................................................................................................................................................................ 191.000.00------------------------1.00--------
........................................................................TTCAATCTTCTTCCTCTAAG.............................................................................................................................................................. 201.000.00--------------------------1.00------
......................................................................TGTTCAATCTTCTTCCTCTCTC.............................................................................................................................................................. 221.000.00-------------------1.00-------------
........................................................................TTCAATCTTCTTCCTCTAGT.............................................................................................................................................................. 201.000.00---------------------------1.00-----
.................................................................................................................................................................................................................ACAACAGTGCCCACCTTT....................... 181.000.00-----------------------------1.00---
...........................................................GCTTGGCCACCTGTTCGGT............................................................................................................................................................................ 191.000.00--------------------------------1.00
.....................................................................CTGTTCAATCTTCTTCCTCT................................................................................................................................................................. 201.000.00-----------------------1.00---------
........................................................................TTCAATCTTCTTCCTCTTAA.............................................................................................................................................................. 201.000.00-----------1.00---------------------
........................................................................TTCAATCTTCTTCCTCTAG............................................................................................................................................................... 191.000.00------1.00--------------------------
.......................................................................GTTCAATCTTCTTCCTCGGTT.............................................................................................................................................................. 211.000.00----------------------1.00----------
..................................................................................................................................................................................................................................TGCGTTGTGGAGGTGC........ 161.000.00-------------1.00-------------------
........................................................................TTCAATCTTCTTCCTCTTAAA............................................................................................................................................................. 211.000.00----------1.00----------------------
........................................................................TTCAATCTTCTTCCTCTCG............................................................................................................................................................... 191.000.00------1.00--------------------------
........................................................................TTCAATCTTCTTCCTCTGAGA............................................................................................................................................................. 211.000.00-----------1.00---------------------
.....................................................................CTGTTCAATCTTCTTCCTCTTT............................................................................................................................................................... 221.000.00-------1.00-------------------------
....................................................................................................................................................AAATCCTGAGATGGAATCT................................................................................... 191.000.00-------------------------1.00-------
.......................................................................................CTGACTCAGTCTCACAGATT............................................................................................................................................... 201.000.00------------------------------1.00--
..........................................................................CAATCTTCTTCCTCTTA............................................................................................................................................................... 171.000.00----------------1.00----------------
.........................................................................TCAATCTTCTTCCTCTTAG.............................................................................................................................................................. 191.000.00------1.00--------------------------
........................................................................TTCAATCTTCTTCCTCTAGA.............................................................................................................................................................. 201.000.00----------1.00----------------------
........................................................................TTCAATCTTCTTCCTCTTAG.............................................................................................................................................................. 201.000.00------1.00--------------------------