ID: uc010dlv.1_intron_1_0_chr18_21294037_f.3p
GENE: (2)
chr18:21327707-21327956+


(1)
B-CELL 		(14)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(3)
LIVER 		(3)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
AATGATTTTTGTTTTGAATTTGATCAGCTTGAGAGGCTGCAGCTGGGTAGAGATGTCCAATAGACAGGAATCAGGATCGGGATCTTGAGCAAGGGATTGTGGTGGGACGTGTTGCCTTGGGAATCAGCATCACATAGAGATGGTAGAAGCTGTGAATCGATGAGATGACATTAATAACTGTATCTCTTTTGTTTTATCAGCTCTTCCATGTGGCCTATATTTTAATCAAATTTGCAAATTCTCCTCGCCC
..................................................................................((((((.(((((((((((......))).))).))))).....((((.((.(((....)))...)).))))....)))).)).......................................................................................
..................................................................................83..............................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormTAX577745(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343335
.......................................................................................AGCAAGGGATTGTGGGT..................................................................................................................................................1740.000.008.005.006.00-5.004.002.001.002.001.002.00---1.00-------1.00---1.001.00----
.......................................................................................AGCAAGGGATTGTGGGTTC................................................................................................................................................195.000.00---3.00--1.00--------1.00----------------
.......................................................................................AGCAAGGGATTGTGGGTT.................................................................................................................................................183.000.00---1.00--------1.00-------1.00-----------
.......................................................................................AGCAAGGGATTGTGGGA..................................................................................................................................................172.000.00-2.00------------------------------
.......................................................................................AGCAAGGGATTGTGGAT..................................................................................................................................................172.000.00-----1.00---1.00----------------------
........................................................................................................................................GAGATGGTAGAAGCTGTGAATCGATGAGATGA..................................................................................3211.001.00----------------1.00---------------
...........................................................................................................................................................ATCGATGAGATGACATTAATAACTGT.....................................................................2611.001.00------------------1.00-------------
.......................................................................................................................................................................................................................TATATTTTAATCAAAACTA................191.000.00-----------------------1.00--------
........................................................................................................GGACGTGTTGCCTTGTGTA...............................................................................................................................191.000.00-------1.00------------------------
...GATTTTTGTTTTGAAGGAA....................................................................................................................................................................................................................................191.000.00-------------1.00------------------
.......................................................................................AGCAAGGGATTGTGGGGTG................................................................................................................................................191.000.00---1.00----------------------------
........................................................................................................................................GAGATGGTAGAAGCTGTGAATCG...........................................................................................2311.001.00-----------------1.00--------------
............................................................................................................................................................TCGATGAGATGACATTCT............................................................................181.000.00----------------------------1.00---
..........................................................................................................................................................................................................................ATTTTAATCAAATTTAATG.............191.000.00-----------1.00--------------------
.......................................................................................AGCAAGGGATTGTGGGC..................................................................................................................................................171.000.00-------1.00------------------------
.........................................................................................CAAGGGATTGTGGTG..................................................................................................................................................1580.120.12------------------------------0.12-

Antisense strand
AATGATTTTTGTTTTGAATTTGATCAGCTTGAGAGGCTGCAGCTGGGTAGAGATGTCCAATAGACAGGAATCAGGATCGGGATCTTGAGCAAGGGATTGTGGTGGGACGTGTTGCCTTGGGAATCAGCATCACATAGAGATGGTAGAAGCTGTGAATCGATGAGATGACATTAATAACTGTATCTCTTTTGTTTTATCAGCTCTTCCATGTGGCCTATATTTTAATCAAATTTGCAAATTCTCCTCGCCC
..................................................................................((((((.(((((((((((......))).))).))))).....((((.((.(((....)))...)).))))....)))).)).......................................................................................
..................................................................................83..............................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormTAX577745(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577740(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM532886(GSM532886)
G850T. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343335
......................................................................................................................................................................................................AGCTCTTCCATGTGGCTGGA................................ 201.000.00---------------------1.00----------
......................................................................................................................................................................................................AGCTCTTCCATGTGGTGG.................................. 181.000.00------------------------1.00-------
......................................................................................................................................................................................................AGCTCTTCCATGTGGTGGA................................. 191.000.00-------------------------1.00------
...................................................................................................................................ACATAGAGATGGTAGC....................................................................................................... 161.000.00-----------------------------1.00--
..............................................................................................................................................................................................GTTTTATCAGCTCTTGCCA......................................... 191.000.00-------------------1.00------------
.........................................................................................................................................ACAGCTTCTACCATCT................................................................................................. 1690.110.11-------------------------------0.11